mRNA_H-akashiwo_Contig1117.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1117.5.1
Unique NamemRNA_H-akashiwo_Contig1117.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1117.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1117contigH-akashiwo_Contig1117:283789..285882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size151
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.9257545-CDS-H-akashiwo_Contig1117:283788..2838461681387086.9257545-CDS-H-akashiwo_Contig1117:283788..283846Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 283789..283846 +
1681387086.9344556-CDS-H-akashiwo_Contig1117:285790..2858821681387086.9344556-CDS-H-akashiwo_Contig1117:285790..285882Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1117 285791..285882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1117.5.1prot_H-akashiwo_Contig1117.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1117 283789..285882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1117.5.1

>prot_H-akashiwo_Contig1117.5.1 ID=prot_H-akashiwo_Contig1117.5.1|Name=mRNA_H-akashiwo_Contig1117.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
VCTLYDGAYADWSCTDGCIWAPNATEYADERQRSSYVCCYRSTSNNELLK
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mRNA from alignment at H-akashiwo_Contig1117:283789..285882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1117.5.1 ID=mRNA_H-akashiwo_Contig1117.5.1|Name=mRNA_H-akashiwo_Contig1117.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2094bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:283789..285882+ (Heterosigma akashiwo CCMP452)
GTTTGCACTCTGTACGATGGGGCCTATGCTGATTGGTCTTGCACTGATGG
CTGCATATGTGAGTAGTACAGAGACACCACTGAAGAAAAATACCCTGCTG
TTTCACTTTTAAAAAATAATATTGGCTATATAACGCACTAGAGCCACGAT
GAAGTGTTGTCGGGCGAGAAACGTCAATCAGCCCGCACATTTCTCGAAGG
CTAACACCCTCGAGAAATGTGCGGGCTGATTGACGTTTGGAGACCGACAA
CACTTCACGGGCTCGTAGTAGCATTATATGGCTGTATCCCACGAGGGACG
ACAGCCATTTGATTTGACCTCCTAGATGAAACCGACCGACTACTGTAGAA
GCCATTAAAAATCTATTATTTCCCTGTTTTTCCAAAAATTGCCCAACCCT
ATAAGGGTCACGCGTTTTTAACGTTTTTCCTCGATTTGGGCCGGCAAGAT
TTTTTGCATGAAATTTGGATCTTCCTTGATTTTAAGAGATAATACTGCAC
CACTACCGCAGGGTCAAAGGGTTTTACGTACCAAAGGGCCCTCAGGCCCG
AGGGATCGGTTCCTTACGACCGCAGGGTCTCACTGAAGTGCAGGGTTTCT
TATTATTTCTTATTTTTTAAATTAACGGGAAACGAGTGCCGAGTACTGTA
CACCAGATGGATTTGGATACTAATCAGTATCACTCGCCTAGGTATCAGGT
AGTTTTGTGATGATCCGGACGCTAATCGGCATCAGTCGCCTAGGTAGAGG
TCGTCTAGCTTATAGCTTGGGTTTGATGGATAAAAAGCAAATTCAATACC
AGCAGGGACTCTTAATTAAAATCAAGTCAATTCAAAATAAAGATGATGCT
CCCGAACGTACCCATAAATGAAATTTAACTTGCATAATTTTTGAATAAAT
GGACTTGAAATAAAGCTCGTTTTGAAAAAAGAGGACACCAAAAACAATGA
AATTTTTGGTTTTTATTTTTAAACTCCAATTGGGGGACAAATCTGCGTGA
CCGATAGGACAACTACAAGTATGCAAATCAACGAAATTTATCCTTGCCCT
CTTTCCTGTTTATACGCGTTTCTTCATACGAAGTACGCACTTCGTCATAA
TAGTATTATCTATGATATCATCACACTGTTTTTTTGCAGCCCCACGAAAT
TTCTTGTTCATTTTCCAGAATATGAGCAAGCAGCTGAACAACTTAAAAGA
AAAAAAACAATGTGCGGGTTTGATTTGAAGATGAAACAAATGATGTCGCA
TGACATGAGCATCTGTCATCGGCATTGCCGAATGACCCTCTGCACCCATC
CTCGGTCGTGGTGGTGTGTGGTCGAGCTCAGTGATGACGGATGCAGGAGG
CGCCTCCTGCATTCATCATCACTGCGTACTCCCACTCATCACTGTATCGT
CCGTGTCATGGTTGAGCATCACGGCTTGGTGCTGGGTAAGAGGTGCAACC
CAGCCTAAAGCCATGGTGTTTGAACGTGAACCCGGACGAACCATGATTGT
TCTGGAACAAGAACCTTCTAAATTTCCAAGGAAAATTCTGAAATTCCAGG
GCGTCAACCTGAAATCCTAGGGCGTCAATCTCTAATTCGAGGGTGACAAT
CTATGCATTTTGCAGTCCTCCTATATTTCCCCCCGAACCCCTCCCAAAAA
GGCATTTGTGAAAAAAATAATCCCTAATAAGTTTTCAAGTGCAAAGTGCG
ATCGTCGCCCCGCGAGTGGGATACAATAATAGTAGTAATGTTGAGGTGTT
GGGCATTTAAACAGTGACTCCGCTTCCATCATCATCAGCGAGTATAGCTC
TACATTGCCAAAGAACTATTATTGCATTATTAATCGTCAGTCTTGGCCAA
AATAAAACATTATTATTTGCATGTCCAACAGATGAAGGGGAAAGGAGGAA
GAAGTTATCGGGCGGAGAAGACAAAAATGAGGACAATGATGTACATACTA
CACATGTTGTATCTTCATACATACATGCTGCATCTTTCTTCTTCTCATTT
AGGGGCACCAAATGCAACTGAATATGCGGATGAGAGGCAGCGTAGCAGCT
ATGTGTGTTGCTATCGCAGTACTAGCAATAACGAGCTTCTCAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1117:283789..285882+

>mRNA_H-akashiwo_Contig1117.5.1 ID=mRNA_H-akashiwo_Contig1117.5.1|Name=mRNA_H-akashiwo_Contig1117.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig1117:283789..285882+ (Heterosigma akashiwo CCMP452)
GTTTGCACTCTGTACGATGGGGCCTATGCTGATTGGTCTTGCACTGATGG
CTGCATATGGGCACCAAATGCAACTGAATATGCGGATGAGAGGCAGCGTA
GCAGCTATGTGTGTTGCTATCGCAGTACTAGCAATAACGAGCTTCTCAAG
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