mRNA_H-akashiwo_Contig1116.5.2 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1116.5.2
Unique NamemRNA_H-akashiwo_Contig1116.5.2
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A6T5NRP6_HETAK (Ribose-5-phosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NRP6_HETAK)

HSP 1 Score: 297 bits (761), Expect = 1.040e-96
Identity = 158/187 (84.49%), Postives = 158/187 (84.49%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK 808
            EL DIVAIPTSVRTKEQAESLGIP                  EVDPELNLVKG G    RE    V AKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK
Sbjct:   86 ELKDIVAIPTSVRTKEQAESLGIPLVTLDTHSDLDVAIDGADEVDPELNLVKGRGGALLREKMVEVCAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK 272
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A7S0ZKY8_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKY8_9RHOD)

HSP 1 Score: 255 bits (651), Expect = 9.290e-80
Identity = 131/184 (71.20%), Postives = 145/184 (78.80%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 799
            EL DIVAIPTS+RTKEQAESL IP       P          EVDP+LNLVKG G    RE    V AKKFIVIVDDSK+V+GLGI GAMPVEVTPFCWEHSL+RL   ESL GC A+LRMDG+KPYVTDNDNYI+DLYF+ PIKD  KAA +M+NMVGVVEHGLFL+MTTAVLIAGK+G+EVK
Sbjct:  111 ELKDIVAIPTSIRTKEQAESLNIPLVTLDTHPVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKMVEGLGISGAMPVEVTPFCWEHSLKRLKECESLAGCDAKLRMDGEKPYVTDNDNYIVDLYFETPIKDAEKAAADMINMVGVVEHGLFLNMTTAVLIAGKNGVEVK 294
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A7S1TKQ2_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKQ2_9RHOD)

HSP 1 Score: 254 bits (649), Expect = 1.270e-79
Identity = 134/184 (72.83%), Postives = 145/184 (78.80%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 799
            EL DIVAIPTS+RTKEQAESL IP       P          EVD +LNLVKG G    RE    V AKKFIVIVDDSKLV GLGI GAMPVEVTPFC+EHSL+RL  A SL GC A+LRMDGDKPYVTDNDNYIIDLYFK+PIKD  KAAEEM+NMVGVVEHGLFL+MTTAVLIAGK+G+E+K
Sbjct:   99 ELKDIVAIPTSIRTKEQAESLDIPLVTLDTHPILDVAIDGADEVDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVTGLGISGAMPVEVTPFCYEHSLKRLQEAPSLAGCEAKLRMDGDKPYVTDNDNYIIDLYFKQPIKDANKAAEEMINMVGVVEHGLFLNMTTAVLIAGKNGVEIK 282
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A7S0T664_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T664_9RHOD)

HSP 1 Score: 248 bits (632), Expect = 5.400e-77
Identity = 129/184 (70.11%), Postives = 144/184 (78.26%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 799
            EL DIVAIPTS+RTKEQAESL IP       P          EVD +LNLVKG G    RE    V AKKFIVIVDDSKLV GLG+ GAMPVEVTPFC+EH+L+RL  A SL GC A+LRMDG+KPYVTDNDNYI+DLYF++PI D  KAAEEM+NMVGVVEHGLFLDMTTAVLIAGK+G+E+K
Sbjct:  104 ELKDIVAIPTSIRTKEQAESLDIPLVTLDTHPVLDVAIDGADEVDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVPGLGVSGAMPVEVTPFCYEHTLKRLKDAPSLAGCDAKLRMDGEKPYVTDNDNYIVDLYFEKPIADANKAAEEMINMVGVVEHGLFLDMTTAVLIAGKNGVEMK 287
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A5J4YW31_PORPP (Ribose-5-phosphate isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW31_PORPP)

HSP 1 Score: 239 bits (610), Expect = 1.000e-73
Identity = 127/184 (69.02%), Postives = 139/184 (75.54%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 799
            EL D+VAIPTS+RTKEQAESL IP       P          EVDP LNLVKG G    RE    V+A KFIVIVDDSKLVDGLGI GAMPVEVTPFCWE +L RL  A+SL GC A+LRM   KPYVTDNDNYI+DLYF EPIKD + AA E+ +MVGVVEHGLFLDMTTAVLIAGK+G+EVK
Sbjct:  101 ELKDVVAIPTSLRTKEQAESLNIPLVTLDTHPKLDVAIDGADEVDPALNLVKGRGGALLREKMVEVMADKFIVIVDDSKLVDGLGISGAMPVEVTPFCWEFTLNRLKQAKSLTGCDAKLRMADGKPYVTDNDNYIVDLYFTEPIKDAQAAATEINSMVGVVEHGLFLDMTTAVLIAGKNGVEVK 284
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A7S3A473_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A473_9RHOD)

HSP 1 Score: 238 bits (606), Expect = 2.660e-73
Identity = 123/185 (66.49%), Postives = 138/185 (74.59%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKE 802
            EL DIVAIPTS+RTKEQAE L IP       P          E D +LNLVKG G    RE    V AKKFIVIVDDSK V GLG+ GAMPVEVTPFCWE +L +L  A S+ GC A+LRM+GDKPYVTDNDNYI+DLYF+EPIKD   AA+E+L MVGVVEHGLFLDMTTAV++AGKDG+EV E
Sbjct:   88 ELKDIVAIPTSIRTKEQAEGLDIPLVTLDTHPVLDVAIDGADEYDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKKVPGLGVSGAMPVEVTPFCWEFTLNKLKGAASVAGCDAKLRMEGDKPYVTDNDNYIVDLYFEEPIKDANAAAKEILEMVGVVEHGLFLDMTTAVIVAGKDGVEVIE 272
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A2V3J0N4_9FLOR (Ribose-5-phosphate isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0N4_9FLOR)

HSP 1 Score: 235 bits (600), Expect = 6.710e-73
Identity = 122/185 (65.95%), Postives = 141/185 (76.22%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKE 802
            EL+DIVAIPTS+RTKEQAESLGIP       P          EVDP+LNLVKG G    RE    V AKKFIVIVD+SKLVDGLGI GAMPVEVTPFC++ +L RL    S+KGCTA+LRMD DKPYVTDNDNYI+DL+F  PIKD   AA E+ ++VG+VEHGLFL M++AV+IAGKDG+ VKE
Sbjct:   52 ELSDIVAIPTSIRTKEQAESLGIPLVQLDTHPVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVQAKKFIVIVDESKLVDGLGISGAMPVEVTPFCYQFNLDRLLNLPSIKGCTAKLRMDADKPYVTDNDNYIVDLFFDTPIKDAALAASEIRSLVGIVEHGLFLGMSSAVIIAGKDGVYVKE 236
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: A0A6T6DAD6_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DAD6_9RHOD)

HSP 1 Score: 227 bits (578), Expect = 9.320e-69
Identity = 122/185 (65.95%), Postives = 135/185 (72.97%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGD-KPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 799
            EL DIVAIPTS+RTK+QAE L IP       P          EVD ELNLVKG G    RE    V AKKFIVIVDDSKLV GLGI GAMPVE+TPFCW+HSL RL  A +L GCTA+LRMD +  PYVTDNDNYI+DLYF  PIKD + AAEE+ +MVG+VEHGLFLDMTTA +IA   GIEVK
Sbjct:  112 ELKDIVAIPTSIRTKDQAEGLKIPLVTLDTHPILDVAIDGADEVDSELNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVSGLGISGAMPVEITPFCWQHSLNRLLNAPTLAGCTAKLRMDANGNPYVTDNDNYIVDLYFDTPIKDPKAAAEEINSMVGIVEHGLFLDMTTACIIAKSGGIEVK 296
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: D8LDV8_ECTSI (Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV8_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 3.990e-68
Identity = 118/184 (64.13%), Postives = 131/184 (71.20%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 799
            EL DIVAIPTS+RTKEQAESL IP                  EVDP+LNLVKG G    RE    V AKKFIVIVDDSK V GLGI GAMPVEVTPFCWEH+L  +    S+KGC A+LR +  KPYVTDNDNYI+DLYF +PIKD  +A +EML  VGVVEHGLFLDM+ AV+ AG DGI VK
Sbjct:   49 ELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVK 232
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Match: K8Z9G7_NANGC (Ribose-5-phosphate isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z9G7_NANGC)

HSP 1 Score: 215 bits (547), Expect = 2.470e-64
Identity = 113/188 (60.11%), Postives = 132/188 (70.21%), Query Frame = 2 
Query:  248 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGC-TAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK 808
            EL DIVAIPTS+RTKEQAESLG+P                  EVDP LNLVKG G    RE    V AKKFIVIVDDSK+V GLG+ GAMPVE+TPFC EH+ + +     +KG  T +LRMDGDKPYVTDNDNYI+DLY+ +PI D +  A  +  +VGVVEHG FLDMTTAV++AGK+GIEV   K
Sbjct:   94 ELKDIVAIPTSIRTKEQAESLGVPLVTLDSHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1116.5.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6T5NRP6_HETAK1.040e-9684.49Ribose-5-phosphate isomerase n=1 Tax=Heterosigma a... [more]
A0A7S0ZKY8_9RHOD9.290e-8071.20Ribose-5-phosphate isomerase n=1 Tax=Timspurckia o... [more]
A0A7S1TKQ2_9RHOD1.270e-7972.83Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A7S0T664_9RHOD5.400e-7770.11Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A5J4YW31_PORPP1.000e-7369.02Ribose-5-phosphate isomerase n=1 Tax=Porphyridium ... [more]
A0A7S3A473_9RHOD2.660e-7366.49Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A2V3J0N4_9FLOR6.710e-7365.95Ribose-5-phosphate isomerase n=1 Tax=Gracilariopsi... [more]
A0A6T6DAD6_9RHOD9.320e-6965.95Ribose-5-phosphate isomerase n=1 Tax=Compsopogon c... [more]
D8LDV8_ECTSI3.990e-6864.13Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus si... [more]
K8Z9G7_NANGC2.470e-6460.11Ribose-5-phosphate isomerase n=3 Tax=Monodopsidace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1116contigH-akashiwo_Contig1116:147523..154918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD39440
Preferred nameRPI2
PFAMsRib_5-P_isom_A
Model size1095
Max annot lvl2759|Eukaryota
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons7
Evalue2.07e-18
EggNOG OGsCOG0120@1|root,KOG3075@2759|Eukaryota
EC5.3.1.6
Descriptionribose-5-phosphate isomerase activity
Cds size375
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1116.5.2prot_H-akashiwo_Contig1116.5.2Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1116 150967..154901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.6576893-UTR-H-akashiwo_Contig1116:147522..1479351681387086.6576893-UTR-H-akashiwo_Contig1116:147522..147935Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 147523..147935 -
1681387086.6705658-UTR-H-akashiwo_Contig1116:149202..1492971681387086.6705658-UTR-H-akashiwo_Contig1116:149202..149297Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 149203..149297 -
1681387086.683726-UTR-H-akashiwo_Contig1116:149850..1499971681387086.683726-UTR-H-akashiwo_Contig1116:149850..149997Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 149851..149997 -
1681387086.6936882-UTR-H-akashiwo_Contig1116:150918..1509661681387086.6936882-UTR-H-akashiwo_Contig1116:150918..150966Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 150919..150966 -
1681387086.7413108-UTR-H-akashiwo_Contig1116:154901..1549181681387086.7413108-UTR-H-akashiwo_Contig1116:154901..154918Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 154902..154918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.708095-CDS-H-akashiwo_Contig1116:150966..1510151681387086.708095-CDS-H-akashiwo_Contig1116:150966..151015Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 150967..151015 -
1681387086.7168267-CDS-H-akashiwo_Contig1116:154142..1542691681387086.7168267-CDS-H-akashiwo_Contig1116:154142..154269Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 154143..154269 -
1681387086.7249851-CDS-H-akashiwo_Contig1116:154529..1546111681387086.7249851-CDS-H-akashiwo_Contig1116:154529..154611Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 154530..154611 -
1681387086.733165-CDS-H-akashiwo_Contig1116:154784..1549011681387086.733165-CDS-H-akashiwo_Contig1116:154784..154901Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 154785..154901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1116.5.2

>prot_H-akashiwo_Contig1116.5.2 ID=prot_H-akashiwo_Contig1116.5.2|Name=mRNA_H-akashiwo_Contig1116.5.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=125bp
MLVLAAGASAFTTQNSFNVASRSVGGIRMMATQDELKKQVGYKAIDDYVT
SGMVVGLGTGSTAAFAVERLGELMASASSRTSWPSPPPCAPRSRRSPSAS
PGHPGHPLRPGRGHRRRPARWTPS*
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mRNA from alignment at H-akashiwo_Contig1116:147523..154918-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1116.5.2 ID=mRNA_H-akashiwo_Contig1116.5.2|Name=mRNA_H-akashiwo_Contig1116.5.2|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7396bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:147523..154918- (Heterosigma akashiwo CCMP452)
CTTTCAAAGCCCTTTGCATGCTGGTGCTCGCGGCAGGCGCTTCTGCCTTC
ACCACCCAAAACTCTTTCAATGTTGCTTCCAGATCTGTGGGCGGGATCAG
GATGATGGCCACCCAGGACGAGCTGAAGAAACAGGCAAGCGGTTTTCATC
ATCAGTTGCTGACTATACTCTATATACCTGTGCGCAGATGTGGGGGCCTG
TTTGATGAGAGGAGGAAGTATCAATCAATTCCAACTGGACTTCTATGAAG
CAGCAATAAAAACATCATCATACTACTTCCCTGTTCTTGAAAATGTTGAA
CTCACAGGTTGGCTACAAGGCCATCGATGACTACGTCACGAGCGGCATGG
TCGTGGGTTTGGGTACAGGATCCACTGCTGCCTTCGCTGGTAAGCTACTG
ATAACTTTGCTTGCACTTTTTGGCCTTGCTTTTTGGTAAAAAAAATGCTG
CAGCCTCCCTAAGTGTCGCCTCAAACACACGTAGTATAGTCGCATAGTTA
TAGTAAATTTTACTACCAGTAGAACTTTTTCCAGTCACAAACAGCTTTAC
CAGTAACATTTTGGCTCCAGGTTATTTCAAGATGTAGCTCTAGTACTGTT
CGCCCTGTAATAAATATTCTTTGGCCTGCCCCCTCCCTGGCGGCGCCAGT
GGAGCGCCTCGGCGAGCTGATGGCCTCCGCGAGCTCACGGACATCGTGGC
CATCCCCACCTCCGTGCGCACCAAGGAGCAGGCGGAGTCCCTCGGCATCC
CCTGGTCACCCTGGACACCCACTCCGGTCTTGGGCGGGCCCGGCCGTGCC
CCTCAGTGTCGCCCACGCACCCCGGGTGCTGTGGCGGGTGAGGGTGCCTT
TCCTTCCATAGAGCAGTTCCAGAGGGTGGTTGCGACTTAAAACCCTATGG
TCAAGCAGCTCTGAAACAACCAGTTGCCCCCGCCAAACGTAACCAACCCT
AAAACCCTAACCCTAACCCAACCCAAACCCAAGCAATATGGCCAGTGCCG
GGCACGGTGGGTTGCTGCAATTTTCGCTATCATCGATTTCGAGAGAGACC
ATGTCGCCCCTTGCATGTTCACCACAGATTAGGCCCTCCCTCGCAAAAAA
GTGAAGTTGAAATTCTTTTTTATCCCTGAAGCAATAGCGGGAACCATAAG
CGCACTTCACAAAGACCATGCCTCTGGCTGTGTGGTACTGGCACACTCTG
CTTTCCTCAACCCCTGGCAGATCATGGGTAGGAAACTCAACACAATCTAG
AACTTCACCTGGGGTAATGCTGAGCCCTTTACTGTTGTTGTAAAGGGGTA
ACTTGGAAGCACAGCTCGTAGCGCGTGCACACCTCAAAAGGCACTTCCCT
AATTTCTCAGTGCTCGTCACAGTGCAGCCCTTGTGGTGTTCATGCAAAAA
AGCCGTTAAATACGATGAAGTTGCTGCAATTTTCGCTATCATCGCTTTTA
GAGAGACCAGGTTGCCCCTGTCGTTTACACCACTGATGAGGCCCTCCCTC
GCATCAGTGAAGTTGGAAATCTTTTTTATCCCTGAAGCAATAGCGGGGAC
CATAAGCGCACTTCTCAATGGCCATGCCTCTGGCTGTGTGGTACTGGCAC
ACACTGCTTTCCTCATCCTCATCCCCTGGTAGACCATGGGTAGGAAAATC
AACACAATCTAGAACTTCACAGTTGATCTGTTTCATCCCCTCGGTCCTGT
GATCATAACATACCATGCCACTGCTACAGATATCTGGGGAGAGCCAAAGA
GAGGCATCTGGCGGCACTCAGGTGTGTTTGACATCAACAGAGCATGAGGC
AGCGCAGTGGCAGCCGGGTTCTGTGGAAAAAAAAAGTGTTCTGGTAGGCT
GATCAGTGGGAACTGCAATTGCACTCCAGCACCACGCTCACTCTTGCCCA
TCTTTCTGGACCAGAGGTGCTTCGTGGACACAAATTTGCAGTTCCCATTG
TTCAACATACCAGACCACTTTTCTGCTACACAACCCTTCTGTAGCTGCGC
GTCTCATGCTGTTGGTGGTGTGTAACACACCTGAGTGCCGCCAGATGCCC
CTCTTTGGCCCTACCCCCGAATTCTGTAGCAGTGGCATGGTCTGTTGGGA
TCACAGGACCGAGGGCATAAAACAGATCAACTGCGAAGTTCAGATTGCGT
TGAGTTTCCTACCCATGCTCTGCCAGGGGCTGGGGCAAGCAGTGTGTGCG
TTGTGCATCAGGGATAAAAGTCAATTTCAACTTCACTGATGCGAGGGAGG
GCCTGCCTGTTCTATGTGGTGTACATATGCAAGGTGTGACAAGGTCGCTT
TTGAAAGCGATGACGGCGAGAATTGCAGTAACTTCGTCGTAGTTAATGGT
TTTTTTCATGAACACCACAAGGGCTGGCACTGTGGTGAGCGCTGGGTAAT
GAGGGAAGTGCCTTATTTAAGGTGCACGCACGAGCTATGCTTCCAATTTA
CTCCTTTACAACTTAAAGGGGCTCAGCATAACCCCAGGTGCAGTACTGAG
GCCTCCATCAACCACGCCCGGCGCGGCGCGTCTTAGACTTAGCTGTGTGC
GTGGAGCCATTCCGTCAGCACCATCAATATCGCGTGGAGCATTAAATGTA
GTTCTTAGTGCAGCAGACCTGGTGAATCAAAAGAAGCTAGGTGCGGACTT
TTTTGAGCCTAGGCCAGGAAGAAGAGGACTGCAAGTTGTCCACTGAATGA
AGCACTGCGAGCAGGCCAGGACCAACAAGATGCTGTTTGGCTATACCACG
CGCCACATACCAGCTGCTGTTCCTCCCTGAACACAAAGGATGTACGCTAA
TGCTGCAATACCTGGGCCAGCTGAGGTCCAGGAAAGGATGAACACTGATG
CATGTACGCTAGTGTATACTGCAGCAGTGGAAGGAGGTCGAGGCAATGCC
TGACACTGCCGCCTTTTCTGCCTTCTCATCAGCAACAGAGAACAGATGAT
GGTCAGAACAAGAATAGCGCTGTCCGACAGACATGATTGACAGTACTTCA
GATTTTGGTCCTCTCCTGTACAAAGGACATTGATAAACAAAAGCCTCTCT
CATCGAAGATGTGCGTCCCTCGGAAATTGAAGGCTGGCTGGGACTTACTT
TCGTCATACTTTTACTAGTAACAGCTTCTAGTTTCTGCTCTGCTGTGTGC
CTGGGCAACAACAACAAGATCAAGTCGCACCACCCATGTCAAGTTGAACG
TATGCATCACAGGGGGAAAATGGAGTTGGTGGGGCTGTTATAGTTGGGGG
GTGGTCTTCTGGAAGTTGGTGGGGTGTGAGCGTGTGATCCAAAGTACAAG
TTAGGGGAAGAGGCGCAGGTGATCTGGAGTACCAGGTGGAGGGAGAGTGA
GTGGGTGATATGGAGCATGAGGTGGTGGAGGGGTGGTGGCATTCGGTGGT
GTGGACCATTGCGTTGATGCCGGGTGGTTTGCCCTACCAACTGCAGCTGA
GTCGGGGTTTGGGCCCACTTGGAGTCAGGAGTAAGGAAAAAAGGCATGGT
GTGTTTGCGAGCGCAGGGGTGGTGGGTGGTGCTCGAGTGATCTGGAGCAC
ATGGGTGGTTCGAGGCTGAGCGGGTTATCCAGAGCACGAGGGAAAATAAA
GGGCGCGAGTGATCCAGGGCACGAGGTGGAGGGGGCGTGTTAGCGGGTGC
TCTGCCAGAGCACCCGCATTTCCAGCCCGGGACCGGGGTGGGTGCAGTGT
GGGACGGAAAAAACGGGTGCTCCGGAACGCGCGGCCATTTCATTCGTGCT
ATATCATCCCCACCGCCCCCAGCGCCGTGATCTGTGAACCGCTCCTGCCT
CGAACACGGCGCCCCGCCGCGCGCCGCTCGGCCCGTCCCCACCCACCGCC
CGCCCTCCCCGGCGACCACCACCCGCGCCGCCCGCCCCCCCCCCCGCCCC
CAGACCTGGGCGTGGCCATCGGCGGCGCCCGGCGAGGTGGACCCCGAGCT
GAACCTGGTGAAGGGCAGCGGCGCCCCTGCTGCGCGAGAAGATGGTCGAG
GTGGGCGGGTCCCCCAGCAGGTGTGTGTGAGGGTATGGATGGACAAGGGG
CAGCAGGTGTGAAGCGCGCGGCGCCTGGTTGTCACGGAGCGCGCCGCGAG
AGAGGGAAGGGCACGGGCAGGGTGGAGCCGTCTTGTCGAGTCGAGGGGAG
CTCGCTGTGAGAAGGATGCAAAGAAGAGCAGGCGCAGAGTCACGAAGCCT
CTTCATTAGCTTGTGGTGAGATGGCTAATGGCATGAACAGACGGACTGAG
GATTGGCCTGTGCCCGAACAAGTTCTTCCCTTTACTAGTATACACGCTGA
AGAAACAAGAAAAACTTGGTGCTACATATCATCACACCCGGTGGTTGTTC
AATGACTTGCATTTTTCAACAACTGTACAGAGGGGACTTTTGGCTCCTTG
CATTTTTTTCTGAGATGAGCGGTTGAAGCCGCAGCATAAATTGAGAAGTC
TTTAGCTTCAGTCTATTTGAAAATTTTGGGACTGGCCCCCGGCATATCCG
CCAACAAGCTATGAACTACCTGGTCAGCTGCCACCAACGGGGTGGTTCCT
GCACTTCTTCAGCGGGCCTGGCGCCCTGTGCGCAATGAACCCAACCCTCA
TTGGGCTGCTCGGGAGCACTCATAGTGCTCATGAAGAAAAATCACAAGTG
CGGGGTTTGTGCTTGGCGAATCCCGTGGTATAACTCTGGCAGGACGATTC
CAAGCCTGAAGAAGGGCTCTCAACTAACTGTGCTCTCAACTAACTGTACA
CTTGTATGGTCGAGGTTTGTTGTTATTGTCACGTCATCACTGCCTCAATT
GAAAGAACAAAACACTCTATCAGGGCCAGTACAGACAGCTATTTAGAGCC
CGAAGTCCAAAACAATCTCTTGAACATCACGTCTTGCGGCCCCCTTCCGT
TCTCTTTTGGCCCCCCCTCAGGTGTGCTTGCCAAGAAGTTCATTGTGATC
GTGGACGACTCCAAGCTGGTGGACGGGCTGGGCATCGACGGGGCCATGCC
CGTGGAGGTCACCCCTTTCTGCTGGGAGCACTCGCTGCAGCGCCTCACCG
CCGCCGAGTCCCTCAAGGGTATAGAAACAAAAGACCCCCTCGAGCCACTC
GAGGTTGAAGAAAGCCCCCTCCACCCGTCGTTGAGGACAGCTGCGGTCTT
GTACAAGGTGCTGCTGTGCCTTCACCCCCGTTCAGCACCTCAAGTCAAAG
CCCCATCTTGAGTCTAGATGTGTTCTTGTGTATATGTAATTCGGTGTGTG
CCCCCCCCCACTCCTCCTGATGTGTGTGCTGGTATGTTACAAACTGGTCC
TCTGCGAAAGGTATTCATTCCCTTCCCTTCGCAATGCTACTCCGTATAGT
GCTGCCTGACCTGGCCCTTCTCCGCTACTGCCTGTTGGGGGTCCCAGCAA
AGGTCCCAGCAGAGTGCTACTGCTCTCCACCACCCTTTCGTACTTTGTAC
CATTTGATCGCAGCAGCCTTTCGCAAAATTATTTATGATCTTCTTCTGTT
TCATCCTCTGCACCTCCTGCACTGCTCCATGTGAACCACATTTTTTTTCA
CAACAACAGCAAACGCAGCGCTACTACATAGATAATATTACCGGCCCCCT
GTTTCGACCCCTCACCCCCAGGGTGCACTGCCGAGCTCCGCATGGACGGC
GACAAGCCCTACGTGACCGACAATGACAACTACATCATCGACCTGTACTT
CAAGGAGCCCATCAAGGTATCGAAACCAATTGAGGAAAGGGGGGCGGGGG
CGTGCCTGGAAGAAGGGGGCGGCGACTTCTGCCTTACCTGAGGCCGGGGA
GGAAGGGGGCGTGGGGGGGGGATGGTCGGGCAGTTGAGCTGCCTCAGCGT
TGCCTGGTGGGGCCAGGGGGGGAAGGGAAGAGGGGGAGGGGGGATGGTCG
GGCATTTCAGAGGGAGGGAGAGGAAAGGGAGGGTGCTCGACAATTGTAAA
TGAGGGTAAAGGGGAAAGAACAAGTTGTGCGAGTGGGTTGGTTGGTCATG
ATCCGGAGAAGGAGGTATATATTATATAGAAGAATATGCAGTGAATAATA
GTTCAATGGTCACACAGTATGGATGTCAAAACTGGGTCAGTAGAAAGCAG
CACTGTGGCTGTGGCTGGCGAGTGGTATCTCAGCAATAATACAAATATGG
TCATGCTCACAAACCCAACAATGCCGCTAAAGTCCATTATTATACATATC
ATGTACGAAGCAGAGATCATACACAGTGCGCTAGCATGGATATATGTTGT
GCACTCAAAGGTGTAAAATATGCTTTGTTTAATGAATCTGTGTGCCCAGA
TCTTAAGCTAACACCGTCTGTGTGTCAGTTTCAAAATGGGGCAAGAGCTA
GTTTTGAAACTGTGGTGCAACCTTTTCTTTCATCAACCTCTTGCCAGTTC
ACTGGAGTAGAGTCGTTTAGAGTATCCAATTGTACCTTAGGGTGACTGGG
GATACACAGAGTGCGCAGAGGCTTAGCGGGGATACACAGAGTGCGCAGAG
GCTTAGCAGCTGGGGAACACTTCATCCCTCTCCAGGCCTCCTGGATGGAG
GCGTCTCCAATCTGCCCACATTTGCAGCCTTCCCTCTCCTCTCTCTTTAT
AGCCAGGAAATTTGCAGAGGGGGCCGAAGTCTTGTACTACAGCTGAGCGA
GTCCTTTGAATCTCTAAACACCCACCCAAACCAAAGCTGGCAATGTCTGT
TACATATACCGCAATACCACATACATGGAGCCTGGCAGATAAGACAGGCA
GAGGCTGTAACATAAGTCTACTAAGTAGTAGATAATGCCAGAAGTGAAAG
AGTCCCTTCCCTGTATGGAGGCCGGGGCTTCGGTCCTTGTATAGTTATCA
AAAAGGCTGGACCTTGAATAGATTATAGCATAATCATCATTATCATGAGT
CTACATAGATACGAGTTGCCAAACTCTCATCATGGCCAACAAATTGCCCC
CTTTTTTTGTACCATTGCGAACAAACTGCACAGGACACCCGGAAGGCTGC
TGAGGAGATGCTGAACATGGTGGGCGTCGTCGAGCACGGGCTTTTCCTCG
ACATGACCACCGCCGTTCTGATTGCGGGCAAGGACGGCATCGAGGTCAAA
GAGGCAAAGTAAGCGCGGTCAGACCGGCCAACCTGCTGCTGCCCCGGTGC
AAGGGCAGCCAGGGGCTGTGGGTGTGCAGATGCTGGATGGTGATGCGAAC
AGCTAGCCTCTTGGTCTTTCATCTTGGACATCGAATTGGTGTATCATTGG
CTACCTGCATGATGTAGGACATGGAGCAGCAGTGGTGGCATTACACTGCA
CTGTTTTTTGTCAAAACAAGCAGGAACAACTATTGTACTGCCACTGCAGC
CGGCTGGATGGATGGTGATGCAGTGCCTGTTGTGTGCCTTGACGTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1116:147523..154918-

>mRNA_H-akashiwo_Contig1116.5.2 ID=mRNA_H-akashiwo_Contig1116.5.2|Name=mRNA_H-akashiwo_Contig1116.5.2|organism=Heterosigma akashiwo CCMP452|type=CDS|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:147523..154918- (Heterosigma akashiwo CCMP452)
ATGCTGGTGCTCGCGGCAGGCGCTTCTGCCTTCACCACCCAAAACTCTTT
CAATGTTGCTTCCAGATCTGTGGGCGGGATCAGGATGATGGCCACCCAGG
ACGAGCTGAAGAAACAGGTTGGCTACAAGGCCATCGATGACTACGTCACG
AGCGGCATGGTCGTGGGTTTGGGTACAGGATCCACTGCTGCCTTCGCTGT
GGAGCGCCTCGGCGAGCTGATGGCCTCCGCGAGCTCACGGACATCGTGGC
CATCCCCACCTCCGTGCGCACCAAGGAGCAGGCGGAGTCCCTCGGCATCC
CCTGGTCACCCTGGACACCCACTCCGACCTGGGCGTGGCCATCGGCGGCG
CCCGGCGAGGTGGACCCCGAGCTGA
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