mRNA_H-akashiwo_Contig1116.1.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK) HSP 1 Score: 204 bits (520), Expect = 5.010e-63 Identity = 96/124 (77.42%), Postives = 112/124 (90.32%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNA 372
KSVTGY++ LGD+PIVWSSKLQ AV+TSTVEA YLALRS +KDIMWLR LL ++GCPQ EP PVVEDNSAC+EWANDM+V+++NRHFHVSYHLAKE+V+LGTI+M Y KT DQ+ADI TKALNA
Sbjct: 214 KSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNA 337
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3JFW6_NOCCA (Copia protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JFW6_NOCCA) HSP 1 Score: 110 bits (274), Expect = 4.170e-28 Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNAE 375
+S TGY +G + + W SK Q VS S+ EA Y A+R ++MWL+ LL DLG P P + DN A I A++ V + +H V H +E++ LG I CYTK+SDQLADIFTKA +++
Sbjct: 29 RSTTGYCTFIGGNLVTWKSKKQKVVSCSSCEAEYRAMRRLTTELMWLKMLLKDLGIETPRPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTKSSDQLADIFTKAASSK 153
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A8D8N898_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8N898_CULPI) HSP 1 Score: 107 bits (266), Expect = 5.870e-27 Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNA 372
KS +G+V G++ I W+S+ QT VSTST+EA Y+AL +++++WLR LLA+LG Q P + EDN +C+++ +R+++H +H K+ G I + Y T+D LADI TK L A
Sbjct: 22 KSNSGFVFRFGEATISWASRKQTCVSTSTMEAEYVALAEAVQEVVWLRRLLAELGEKQQTPTTIFEDNKSCLDFVALERQNRRSKHIDTKFHYIKDAATSGQIVLRYCTTTDMLADIMTKPLGA 145
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3J9E7_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3J9E7_NOCCA) HSP 1 Score: 106 bits (264), Expect = 9.470e-27 Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKA 363
+S TGY +G + + W SK Q VS S+ EA Y A+R ++MWL+ LL DLG P P + DN A I A++ V + +H V H +E++ LG I CYT++++QLADIFTKA
Sbjct: 16 RSTTGYCTFIGGNLVTWKSKKQQVVSCSSAEAEYRAMRKLTTELMWLKMLLKDLGIETPNPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMKLGVILPCYTRSAEQLADIFTKA 136
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3D135_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D135_NOCCA) HSP 1 Score: 105 bits (262), Expect = 1.030e-26 Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKA 363
+S TGY +G + + W SK Q VS S+ EA Y A+R ++MWL+ LL DLG P P + DN A I A++ V + +H V H +E++ LG I CYT++ DQLADIFTKA
Sbjct: 12 RSTTGYCTFVGGNLVTWKSKKQKVVSLSSTEAEYRAMRRLTTELMWLKMLLEDLGRETPTPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTRSEDQLADIFTKA 132
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A8J4LUU8_9CHLO (Integrase catalytic domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LUU8_9CHLO) HSP 1 Score: 113 bits (282), Expect = 1.380e-26 Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKAL 366
+S TGYV +LG I WSSKLQ+ V+TST EA Y+A S +K+ +WLRHLL DLG + P+ DN ACI + S + +H V +H A+ERV G ++M T DQ++D TKAL
Sbjct: 1332 RSTTGYVFVLGGGAISWSSKLQSTVATSTAEAEYMAAASTIKEALWLRHLLHDLGL-EVTSVPIKCDNRACISMLESPISSARTKHIDVCHHFARERVERGEVRMVQCSTLDQMSDFLTKAL 1452
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A2N9G8M5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G8M5_FAGSY) HSP 1 Score: 110 bits (274), Expect = 1.710e-26 Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNA 372
+SVTGY I+LG SP+ W +K Q VS S EA Y ++ + +I WL+HLLADL P+P + DN A I A++ V + +H + HL +E++ G IQ + T+ Q AD+FTKAL+A
Sbjct: 101 RSVTGYCILLGQSPVSWKTKKQATVSRSLAEAEYRSMATTCCEITWLKHLLADLNIAHPQPVKLYCDNKAAIHIASNPVFHERTKHIEIDCHLVREKLQAGVIQTAHVSTNRQPADLFTKALDA 224
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE) HSP 1 Score: 105 bits (263), Expect = 2.340e-26 Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKAL 366
+S TG++ MLG S IVW+S+ Q V++STVEA Y+A+ ++ +WL+ LL +LG EP P+ DN I A + R+ +H + +HL +E + G +++ Y T+ Q+ADIFTKAL
Sbjct: 30 RSTTGHIFMLGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKAL 151
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3E1G7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3E1G7_NOCCA) HSP 1 Score: 110 bits (275), Expect = 1.170e-25 Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNAE 375
+S TGY +G + + W SK Q VS S+ EA Y A+R ++MWL+ LL DLG P+P + DN A I A++ V + +H V H +E++ LG I CYTK+SDQLADIFTKA +++
Sbjct: 705 RSTTGYCTFIGGNLVTWKSKKQKVVSCSSCEAEYRAMRRLTTELMWLKMLLKDLGIETPKPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTKSSDQLADIFTKAASSK 829
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3H758_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H758_NOCCA) HSP 1 Score: 110 bits (275), Expect = 1.170e-25 Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query: 1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNAE 375
+S TGY +G + + W SK Q VS S+ EA Y A+R ++MWL+ LL DLG P+P + DN A I A++ V + +H V H +E++ LG I CYTK+SDQLADIFTKA +++
Sbjct: 766 RSTTGYCTFIGGNLVTWKSKKQKVVSCSSCEAEYRAMRRLTTELMWLKMLLKDLGIETPKPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTKSSDQLADIFTKATSSK 890 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1116.1.1 >prot_H-akashiwo_Contig1116.1.1 ID=prot_H-akashiwo_Contig1116.1.1|Name=mRNA_H-akashiwo_Contig1116.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp MLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQback to top mRNA from alignment at H-akashiwo_Contig1116:13196..13570- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1116.1.1 ID=mRNA_H-akashiwo_Contig1116.1.1|Name=mRNA_H-akashiwo_Contig1116.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:13196..13570- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1116:13196..13570- >mRNA_H-akashiwo_Contig1116.1.1 ID=mRNA_H-akashiwo_Contig1116.1.1|Name=mRNA_H-akashiwo_Contig1116.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:13196..13570- (Heterosigma akashiwo CCMP452)back to top |