mRNA_H-akashiwo_Contig1116.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1116.1.1
Unique NamemRNA_H-akashiwo_Contig1116.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 204 bits (520), Expect = 5.010e-63
Identity = 96/124 (77.42%), Postives = 112/124 (90.32%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNA 372
            KSVTGY++ LGD+PIVWSSKLQ AV+TSTVEA YLALRS +KDIMWLR LL ++GCPQ EP PVVEDNSAC+EWANDM+V+++NRHFHVSYHLAKE+V+LGTI+M Y KT DQ+ADI TKALNA
Sbjct:  214 KSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNA 337          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3JFW6_NOCCA (Copia protein (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JFW6_NOCCA)

HSP 1 Score: 110 bits (274), Expect = 4.170e-28
Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNAE 375
            +S TGY   +G + + W SK Q  VS S+ EA Y A+R    ++MWL+ LL DLG   P P  +  DN A I  A++ V   + +H  V  H  +E++ LG I  CYTK+SDQLADIFTKA +++
Sbjct:   29 RSTTGYCTFIGGNLVTWKSKKQKVVSCSSCEAEYRAMRRLTTELMWLKMLLKDLGIETPRPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTKSSDQLADIFTKAASSK 153          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A8D8N898_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8N898_CULPI)

HSP 1 Score: 107 bits (266), Expect = 5.870e-27
Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNA 372
            KS +G+V   G++ I W+S+ QT VSTST+EA Y+AL   +++++WLR LLA+LG  Q  P  + EDN +C+++      +R+++H    +H  K+    G I + Y  T+D LADI TK L A
Sbjct:   22 KSNSGFVFRFGEATISWASRKQTCVSTSTMEAEYVALAEAVQEVVWLRRLLAELGEKQQTPTTIFEDNKSCLDFVALERQNRRSKHIDTKFHYIKDAATSGQIVLRYCTTTDMLADIMTKPLGA 145          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3J9E7_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3J9E7_NOCCA)

HSP 1 Score: 106 bits (264), Expect = 9.470e-27
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKA 363
            +S TGY   +G + + W SK Q  VS S+ EA Y A+R    ++MWL+ LL DLG   P P  +  DN A I  A++ V   + +H  V  H  +E++ LG I  CYT++++QLADIFTKA
Sbjct:   16 RSTTGYCTFIGGNLVTWKSKKQQVVSCSSAEAEYRAMRKLTTELMWLKMLLKDLGIETPNPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMKLGVILPCYTRSAEQLADIFTKA 136          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3D135_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D135_NOCCA)

HSP 1 Score: 105 bits (262), Expect = 1.030e-26
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKA 363
            +S TGY   +G + + W SK Q  VS S+ EA Y A+R    ++MWL+ LL DLG   P P  +  DN A I  A++ V   + +H  V  H  +E++ LG I  CYT++ DQLADIFTKA
Sbjct:   12 RSTTGYCTFVGGNLVTWKSKKQKVVSLSSTEAEYRAMRRLTTELMWLKMLLEDLGRETPTPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTRSEDQLADIFTKA 132          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A8J4LUU8_9CHLO (Integrase catalytic domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LUU8_9CHLO)

HSP 1 Score: 113 bits (282), Expect = 1.380e-26
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKAL 366
            +S TGYV +LG   I WSSKLQ+ V+TST EA Y+A  S +K+ +WLRHLL DLG  +    P+  DN ACI      + S + +H  V +H A+ERV  G ++M    T DQ++D  TKAL
Sbjct: 1332 RSTTGYVFVLGGGAISWSSKLQSTVATSTAEAEYMAAASTIKEALWLRHLLHDLGL-EVTSVPIKCDNRACISMLESPISSARTKHIDVCHHFARERVERGEVRMVQCSTLDQMSDFLTKAL 1452          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A2N9G8M5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G8M5_FAGSY)

HSP 1 Score: 110 bits (274), Expect = 1.710e-26
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNA 372
            +SVTGY I+LG SP+ W +K Q  VS S  EA Y ++ +   +I WL+HLLADL    P+P  +  DN A I  A++ V   + +H  +  HL +E++  G IQ  +  T+ Q AD+FTKAL+A
Sbjct:  101 RSVTGYCILLGQSPVSWKTKKQATVSRSLAEAEYRSMATTCCEITWLKHLLADLNIAHPQPVKLYCDNKAAIHIASNPVFHERTKHIEIDCHLVREKLQAGVIQTAHVSTNRQPADLFTKALDA 224          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE)

HSP 1 Score: 105 bits (263), Expect = 2.340e-26
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKAL 366
            +S TG++ MLG S IVW+S+ Q  V++STVEA Y+A+    ++ +WL+ LL +LG    EP P+  DN   I  A +    R+ +H  + +HL +E +  G +++ Y  T+ Q+ADIFTKAL
Sbjct:   30 RSTTGHIFMLGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRLGYVPTASQVADIFTKAL 151          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3E1G7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3E1G7_NOCCA)

HSP 1 Score: 110 bits (275), Expect = 1.170e-25
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNAE 375
            +S TGY   +G + + W SK Q  VS S+ EA Y A+R    ++MWL+ LL DLG   P+P  +  DN A I  A++ V   + +H  V  H  +E++ LG I  CYTK+SDQLADIFTKA +++
Sbjct:  705 RSTTGYCTFIGGNLVTWKSKKQKVVSCSSCEAEYRAMRRLTTELMWLKMLLKDLGIETPKPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTKSSDQLADIFTKAASSK 829          
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Match: A0A1J3H758_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H758_NOCCA)

HSP 1 Score: 110 bits (275), Expect = 1.170e-25
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    1 KSVTGYVIMLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQPEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYTKTSDQLADIFTKALNAE 375
            +S TGY   +G + + W SK Q  VS S+ EA Y A+R    ++MWL+ LL DLG   P+P  +  DN A I  A++ V   + +H  V  H  +E++ LG I  CYTK+SDQLADIFTKA +++
Sbjct:  766 RSTTGYCTFIGGNLVTWKSKKQKVVSCSSCEAEYRAMRRLTTELMWLKMLLKDLGIETPKPITMHCDNQAAIHIASNSVFHERTKHIEVDCHKVREQMQLGVILPCYTKSSDQLADIFTKATSSK 890          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1116.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK5.010e-6377.42Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A1J3JFW6_NOCCA4.170e-2844.00Copia protein (Fragment) n=2 Tax=Noccaea caerulesc... [more]
A0A8D8N898_CULPI5.870e-2741.13Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A1J3J9E7_NOCCA9.470e-2742.98Copia protein (Fragment) n=1 Tax=Noccaea caerulesc... [more]
A0A1J3D135_NOCCA1.030e-2643.80Copia protein (Fragment) n=1 Tax=Noccaea caerulesc... [more]
A0A8J4LUU8_9CHLO1.380e-2646.72Integrase catalytic domain-containing protein n=2 ... [more]
A0A2N9G8M5_FAGSY1.710e-2642.74Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A427XXX1_9TREE2.340e-2640.98Uncharacterized protein n=2 Tax=Saitozyma podzolic... [more]
A0A1J3E1G7_NOCCA1.170e-2544.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3H758_NOCCA1.170e-2544.00Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1116contigH-akashiwo_Contig1116:13196..13570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size375
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.63e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size351
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.4394047-CDS-H-akashiwo_Contig1116:13195..135461681387086.4394047-CDS-H-akashiwo_Contig1116:13195..13546Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 13196..13546 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.45315-UTR-H-akashiwo_Contig1116:13546..135701681387086.45315-UTR-H-akashiwo_Contig1116:13546..13570Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 13547..13570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1116.1.1prot_H-akashiwo_Contig1116.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1116 13196..13546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1116.1.1

>prot_H-akashiwo_Contig1116.1.1 ID=prot_H-akashiwo_Contig1116.1.1|Name=mRNA_H-akashiwo_Contig1116.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MLGDSPIVWSSKLQTAVSTSTVEAGYLALRSPMKDIMWLRHLLADLGCPQ
PEPNPVVEDNSACIEWANDMVVSRKNRHFHVSYHLAKERVNLGTIQMCYT
KTSDQLADIFTKALNAE
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mRNA from alignment at H-akashiwo_Contig1116:13196..13570-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1116.1.1 ID=mRNA_H-akashiwo_Contig1116.1.1|Name=mRNA_H-akashiwo_Contig1116.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:13196..13570- (Heterosigma akashiwo CCMP452)
AAGTCGGTGACAGGCTATGTTATCATGCTTGGCGACTCACCCATTGTGTG GTCTTCAAAACTTCAAACTGCAGTCAGTACATCTACTGTGGAGGCTGGGT ACCTGGCACTGAGGTCTCCTATGAAAGACATCATGTGGCTGAGGCATCTT CTTGCAGATCTTGGCTGCCCCCAGCCTGAGCCTAATCCAGTTGTTGAGGA CAACTCTGCCTGTATTGAGTGGGCCAATGACATGGTTGTCTCAAGGAAGA ATAGGCACTTTCATGTGTCCTACCACCTGGCCAAGGAGCGAGTGAACCTG GGCACCATCCAGATGTGCTATACCAAGACCAGTGACCAGTTGGCAGATAT CTTCACCAAGGCCCTGAATGCTGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1116:13196..13570-

>mRNA_H-akashiwo_Contig1116.1.1 ID=mRNA_H-akashiwo_Contig1116.1.1|Name=mRNA_H-akashiwo_Contig1116.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:13196..13570- (Heterosigma akashiwo CCMP452)
ATGCTTGGCGACTCACCCATTGTGTGGTCTTCAAAACTTCAAACTGCAGT
CAGTACATCTACTGTGGAGGCTGGGTACCTGGCACTGAGGTCTCCTATGA
AAGACATCATGTGGCTGAGGCATCTTCTTGCAGATCTTGGCTGCCCCCAG
CCTGAGCCTAATCCAGTTGTTGAGGACAACTCTGCCTGTATTGAGTGGGC
CAATGACATGGTTGTCTCAAGGAAGAATAGGCACTTTCATGTGTCCTACC
ACCTGGCCAAGGAGCGAGTGAACCTGGGCACCATCCAGATGTGCTATACC
AAGACCAGTGACCAGTTGGCAGATATCTTCACCAAGGCCCTGAATGCTGA
A
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