mRNA_H-akashiwo_Contig1111.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1111.1.1
Unique NamemRNA_H-akashiwo_Contig1111.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1111.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1111contigH-akashiwo_Contig1111:12814..13937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size473
Hectar predicted targeting categoryother localisation
Exons3
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.4533622-CDS-H-akashiwo_Contig1111:12813..129251681387085.4533622-CDS-H-akashiwo_Contig1111:12813..12925Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 12814..12925 -
1681387085.4631166-CDS-H-akashiwo_Contig1111:13341..136181681387085.4631166-CDS-H-akashiwo_Contig1111:13341..13618Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 13342..13618 -
1681387085.4729307-CDS-H-akashiwo_Contig1111:13855..139161681387085.4729307-CDS-H-akashiwo_Contig1111:13855..13916Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1111 13856..13916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.4826744-UTR-H-akashiwo_Contig1111:13916..139371681387085.4826744-UTR-H-akashiwo_Contig1111:13916..13937Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1111 13917..13937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1111.1.1prot_H-akashiwo_Contig1111.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1111 12814..13916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1111.1.1

>prot_H-akashiwo_Contig1111.1.1 ID=prot_H-akashiwo_Contig1111.1.1|Name=mRNA_H-akashiwo_Contig1111.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
MANNGGGARPKTPPTGGTTTGNFNDLKTKWDQASGQKKAAEYDAQRDSAR
EMTYQEIVALRHRSGMTVADLVQCYSGNGKVQPWEQFMMRIINRERKFGE
FAEACTVSSELLREQLGLRGEEGSPLVTTVMTDFLSRIARLGAPGKRAFL
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mRNA from alignment at H-akashiwo_Contig1111:12814..13937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1111.1.1 ID=mRNA_H-akashiwo_Contig1111.1.1|Name=mRNA_H-akashiwo_Contig1111.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1124bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:12814..13937- (Heterosigma akashiwo CCMP452)
TGGCAGTCCAGCACAAAGAACATGGCTAATAATGGCGGTGGCGCCAGGCC
AAAGACCCCACCCACTGGAGGCACAACAACAGGTTGAAATAAATCAGCTT
TCATACTATATACGCTACTTTTTCACAGTGTACAAAACTAAACTGCAGTC
CTGTTGGGAGTTCATTTTGTCATCAATCAATAAAATGATATCTCTTGGTT
AACGATCATAGTTGCAGTTTTTAATATGTTATTTATGTATGGAGTTCAGC
AGAAACCAATTTAAACAACTATGCAAGCCCATAACTAAAATTTTCCCCGC
ATTATGCCCCACAACACAGGCAATTTCAACGACTTGAAGACCAAATGGGA
CCAGGCATCCGGCCAAAAAAAAGCTGCTGAATACGACGCACAAAGAGATA
GTGCTCGTGAGATGACTTATCAGGAGATCGTTGCTCTGAGGCACAGGTCT
GGAATGACTGTCGCCGATCTCGTGCAGTGCTATTCTGGTAATGGGAAGGT
TCAGCCATGGGAACAATTTATGATGAGGATCATCAATAGGGAACGGAAGT
TTGGAGAGTTTGCGGAGGCTTGCACGGTCAGCAGCGAATTGCTAAGGTAT
TCAATGCATTCTTCTGCCTCCTGTTCTTGGTATGATTGTCATGTACATAA
TTCGCCATGAAATGGATTTAGCCGTTGCTGCAATGATGATATATTCTATG
TTATATGATGATGATAATGATTTTAATTTATTTAAGGTCCAGCTGCTACA
AGGACCGAAGTCCCGGCCTCCATATGCGGACCCTGACACATCTAGGTCCC
TACTTCTCATTGTCTGGTACATCACCAAAACTTTCAGGCGCTACTGATTC
CAACGGCATCCCTCCCAAAATATTCAGAAACCTTCCTTTGACTTCCCACT
GCATGCCCCCCTTCCAATTGCTTGCCAGTCTCATAGAATACAACAATGAC
GATGATCCTCCTTTGTCAACAGCATGCCGTTTGCAACTTTCACCCAAACA
CTGTCACCGCAGAGAGCAGCTGGGCCTGCGGGGGGAGGAAGGGTCGCCCC
TGGTGACCACGGTGATGACGGACTTTCTCTCGCGGATAGCGCGGCTGGGC
GCCCCGGGGAAACGCGCGTTCCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1111:12814..13937-

>mRNA_H-akashiwo_Contig1111.1.1 ID=mRNA_H-akashiwo_Contig1111.1.1|Name=mRNA_H-akashiwo_Contig1111.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig1111:12814..13937- (Heterosigma akashiwo CCMP452)
ATGGCTAATAATGGCGGTGGCGCCAGGCCAAAGACCCCACCCACTGGAGG
CACAACAACAGGCAATTTCAACGACTTGAAGACCAAATGGGACCAGGCAT
CCGGCCAAAAAAAAGCTGCTGAATACGACGCACAAAGAGATAGTGCTCGT
GAGATGACTTATCAGGAGATCGTTGCTCTGAGGCACAGGTCTGGAATGAC
TGTCGCCGATCTCGTGCAGTGCTATTCTGGTAATGGGAAGGTTCAGCCAT
GGGAACAATTTATGATGAGGATCATCAATAGGGAACGGAAGTTTGGAGAG
TTTGCGGAGGCTTGCACGGTCAGCAGCGAATTGCTAAGAGAGCAGCTGGG
CCTGCGGGGGGAGGAAGGGTCGCCCCTGGTGACCACGGTGATGACGGACT
TTCTCTCGCGGATAGCGCGGCTGGGCGCCCCGGGGAAACGCGCGTTCCTG
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