mRNA_H-akashiwo_Contig111.8.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK) HSP 1 Score: 461 bits (1185), Expect = 8.190e-162 Identity = 215/243 (88.48%), Postives = 234/243 (96.30%), Query Frame = 1
Query: 1 CATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVLHHGF 729
C TP+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQRTQ +PEPKHFEA +R FRYLKGTQSESLRLGGDLVLRAFSDSDFC+DR+DGKSVTGY+LFLGDAPI+WSSKLQGAVTTSTVEAEYLALRS+VKDIMWLR LL ++GCPQ EPTPV+EDNSAC+EWA+D+L++K+NRHFHVSYHLAKEQVSLGTIRMF+IKTHDQVADI TKALNA NFERHQRVLHHGF
Sbjct: 109 CKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFERHQRVLHHGF 351
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK) HSP 1 Score: 213 bits (542), Expect = 7.120e-60 Identity = 106/240 (44.17%), Postives = 155/240 (64.58%), Query Frame = 1
Query: 10 PMDHTVDLTPTPGFKAELS--DANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAEN-FERHQRVLH 720
P++ +D+ LS +A +RS+VGT+ W+A WT PE+A+++H L + P A+ + RYL T+ + + LGG L L A++D+DFCS+R G+S +G+ +FLG +PIIWSS++Q VT +T EAEY++LR++V D+MWL+ LL LG +Q P+ EDN ACI WA+D +SK RH HVSYH KE V I + ++ T Q+AD+FTK L+ N F++ RVLH
Sbjct: 757 PVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNNGFKKFSRVLH 995
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: UPI00098DD449 (uncharacterized protein LOC109818890 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DD449) HSP 1 Score: 173 bits (438), Expect = 1.870e-48 Identity = 94/239 (39.33%), Postives = 138/239 (57.74%), Query Frame = 1
Query: 7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
TPM+ + L+ + E D +Y+S+VG+L ++ TRP++ + V + R P H + A+R+ RY+KGT S L D L +SDSD+ D D KS +G+V ++GD W SK Q VT ST EAEY+A S V +WLR+LL +L PQ EPT + DN + I A + + +++H H YH +E +S ++M ++KTHDQVADIFTK L E F + + +L
Sbjct: 145 TPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVFMKLRSLL 380
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A836YH34_9ROSI (Mitochondrial protein n=2 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836YH34_9ROSI) HSP 1 Score: 166 bits (419), Expect = 1.030e-46 Identity = 84/233 (36.05%), Postives = 142/233 (60.94%), Query Frame = 1
Query: 10 PMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLG--GDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 702
P+DH + LT + G + L+D + YR +VG + ++ TRP+LA+ VH L + + P H +AA +V RY+KGT + + L G+L L AF D+D+ + +S+TGY + LG AP+ W +K Q V+ S+ EAEY ++ ++V +I WLR++L DL Q PT + DN A + AS+ + ++ +H + H+ +E++ G I+ ++T +Q AD+FTK + + F++
Sbjct: 21 PVDHNLALTQSEG--SLLADPSQYRRLVGRMIYLTI-TRPDLAYAVHILSQFMDKPRQPHLDAAHQVLRYIKGTPGQGIMLPSTGELELTAFCDADWAKCKDTRRSITGYCIMLGRAPVSWRAKKQTTVSRSSAEAEYRSMATTVCEITWLRNILQDLNEKQFRPTKLFCDNQAALHIASNPVFHERTKHIEIDCHVVREKMQQGIIQTAHVRTKEQPADLFTKPVGSTQFQK 250
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A2M4CK71_ANODA (Putative pol polyprotein (Fragment) n=2 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK71_ANODA) HSP 1 Score: 174 bits (441), Expect = 2.520e-46 Identity = 100/239 (41.84%), Postives = 139/239 (58.16%), Query Frame = 1
Query: 7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGD--LVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
TPMD T + T K EL D + YRS+VG+L +VA RP++A +V L R P K + AA+RV RYL GT + SLRLGGD L AFSDSD+ D KS TGY+LF G I W+S+ Q VT S++EAEY+AL + ++++W R LL D+G Q+ PT + EDN C+++ + ISK+++H ++ V I++ + T D ADI TKAL V+
Sbjct: 579 TPMD-TGYVKDTEKGK-ELEDISKYRSVVGSLMYVATTARPDIAASVSVLGRCFEKPTEKDWVAAKRVIRYLIGTVNWSLRLGGDRDYTLEAFSDSDWAGDHTTRKSTTGYILFYGGGAIAWTSRRQNCVTLSSMEAEYIALGETCQEVIWTRRLLEDMGEVQKSPTLIQEDNQGCLKFITSERISKRSKHIDTKACFVRDLVKKKIIKLNYCPTEDMRADILTKALGTVKHNHFSTVI 815
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A6B9KLA8_9VIRU (Gag-Pol polyprotein n=2 Tax=Atrato Retro-like virus TaxID=2689360 RepID=A0A6B9KLA8_9VIRU) HSP 1 Score: 174 bits (440), Expect = 6.220e-46 Identity = 100/239 (41.84%), Postives = 139/239 (58.16%), Query Frame = 1
Query: 7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGD--LVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
TPMD T + T K EL D + YRS+VG+L +VA RP++A +V L R P K + AA+RV RYL GT + SLRLGGD L AFSDSD+ D KS TGY+LF G I W+S+ Q VT S++EAEY+AL + ++++W R LL D+G Q+ PT + EDN C+++ + ISK+++H ++ V I++ + T D ADI TKAL V+
Sbjct: 1133 TPMD-TGYVKDTEKGK-ELEDISKYRSVVGSLMYVATTARPDIAASVSVLGRCFEKPTEKDWVAAKRVIRYLIGTVNWSLRLGGDRDYTLEAFSDSDWAGDHTTRKSTTGYILFYGGGAIAWTSRRQNCVTLSSMEAEYIALGETCQEVIWTRRLLEDMGEIQKSPTLIQEDNQGCLKFITSERISKRSKHIDTKACFVRDLVEKKIIKLNYCPTEDMRADILTKALGTVKHNHFSTVI 1369
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A2N9GYZ6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GYZ6_FAGSY) HSP 1 Score: 162 bits (410), Expect = 9.780e-46 Identity = 89/230 (38.70%), Postives = 131/230 (56.96%), Query Frame = 1
Query: 22 TVDLTPTPGFKAE----LSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLG-GDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 696
T + PTP L D YRS+VG L + A +TRP++AF V+ + + + P HF A+R+ YLKGT + + G L L AF+D+D+ D D +S +G V+FLG+ PI W SK Q V+ S+ EAEY +L + ++ WLR +L DL + DN++ + AS+ + + +H V YH +E+V G + + FI THDQ+ADIFTKAL + F
Sbjct: 8 TTPIAPTPTLSTTTTDLLLDPTPYRSLVGALQY-ATFTRPDIAFAVNCVCQFMHQPSTIHFATAKRILHYLKGTLDKGILFQPGPLALTAFTDADWARDASDRRSTSGVVIFLGNNPITWLSKKQHTVSRSSTEAEYRSLATGATELAWLRQVLCDLQLYLPSAPLIWCDNTSALALASNPVFHGRTKHIEVDYHFVRERVVRGDLSLQFISTHDQLADIFTKALPSTRF 236
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA) HSP 1 Score: 173 bits (438), Expect = 1.150e-45 Identity = 94/239 (39.33%), Postives = 138/239 (57.74%), Query Frame = 1
Query: 7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
TPM+ + L+ + E D +Y+S+VG+L ++ TRP++ + V + R P H + A+R+ RY+KGT S L D L +SDSD+ D D KS +G+V ++GD W SK Q VT ST EAEY+A S V +WLR+LL +L PQ EPT + DN + I A + + +++H H YH +E +S ++M ++KTHDQVADIFTK L E F + + +L
Sbjct: 1101 TPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVFMKLRSLL 1336
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: UPI0012459BFF (uncharacterized protein LOC115972055 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012459BFF) HSP 1 Score: 166 bits (420), Expect = 1.150e-45 Identity = 86/234 (36.75%), Postives = 141/234 (60.26%), Query Frame = 1
Query: 7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESL--RLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 702
+PM+ + L+ G L DA YR ++G L ++ +RP++A+ VH+L + P H +AA R+ +Y+KGT + + + DL L+AF D+D+ KS+TGY +FLGD+ I W SK Q V+ S+VEAEY ++ ++ ++ WL +LL DL P + P + DN A I +++L+ ++++H H + +V GTI+MF++ + +Q+ADIFTKAL + F R
Sbjct: 150 SPMEQQLKLSKADG--ELLKDAGQYRRLIGKLMYLT-LSRPDIAYAVHRLSQYLAQPRIPHMKAATRILQYIKGTPGQGVFFPVESDLQLKAFCDADWAGCPDTRKSLTGYCVFLGDSLISWRSKKQDIVSRSSVEAEYRSMATTTCEVTWLLYLLRDLHIPHERPVLLYCDNQAAIHISANLVFHERSKHIEADCHKVRNRVLDGTIKMFYVSSRNQLADIFTKALGVDQFSR 380
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A482ZNW2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZNW2_9GAMM) HSP 1 Score: 164 bits (416), Expect = 1.510e-45 Identity = 84/224 (37.50%), Postives = 134/224 (59.82%), Query Frame = 1
Query: 52 KAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESL---RLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRV 714
++EL+D ++Y+S VG+L ++A TR ++AF V+ + R + P H+ A +R+FRYL+GT L R G +SD+D+ D D KS TGY+ +G + W K Q +V ST E+EY+AL S+ ++ +W+R L +DLG PQ +PT + EDN + I A + +++H + YH +EQVS I + + T D +ADI TK + E FE+ +++
Sbjct: 115 ESELTDQSLYQSAVGSLLYLATRTRLDIAFAVNNVARYCSKPTKPHWIAVKRIFRYLRGTTHFGLLYSRGSGAPTPIGYSDADWGGDCNDHKSTTGYLFQIGGTAVTWKCKKQSSVALSTAESEYMALSSAAQEAVWIRELNSDLGNPQSQPTLIYEDNQSAIAMAKNPQFHGRSKHIGIKYHFIREQVSNDKICLQYCPTEDMIADILTKGIGPEKFEKLRKM 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig111.8.1 >prot_H-akashiwo_Contig111.8.1 ID=prot_H-akashiwo_Contig111.8.1|Name=mRNA_H-akashiwo_Contig111.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=242bp MDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRback to top mRNA from alignment at H-akashiwo_Contig111:731745..732482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig111.8.1 ID=mRNA_H-akashiwo_Contig111.8.1|Name=mRNA_H-akashiwo_Contig111.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=738bp|location=Sequence derived from alignment at H-akashiwo_Contig111:731745..732482+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig111:731745..732482+ >mRNA_H-akashiwo_Contig111.8.1 ID=mRNA_H-akashiwo_Contig111.8.1|Name=mRNA_H-akashiwo_Contig111.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=726bp|location=Sequence derived from alignment at H-akashiwo_Contig111:731745..732482+ (Heterosigma akashiwo CCMP452)back to top |