mRNA_H-akashiwo_Contig111.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig111.8.1
Unique NamemRNA_H-akashiwo_Contig111.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 461 bits (1185), Expect = 8.190e-162
Identity = 215/243 (88.48%), Postives = 234/243 (96.30%), Query Frame = 1
Query:    1 CATPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVLHHGF 729
            C TP+DHTVDLTPTPGFKAELSDAN+YRSMVGTLAWVANWTRPELAFTVHKLQRTQ +PEPKHFEA +R FRYLKGTQSESLRLGGDLVLRAFSDSDFC+DR+DGKSVTGY+LFLGDAPI+WSSKLQGAVTTSTVEAEYLALRS+VKDIMWLR LL ++GCPQ EPTPV+EDNSAC+EWA+D+L++K+NRHFHVSYHLAKEQVSLGTIRMF+IKTHDQVADI TKALNA NFERHQRVLHHGF
Sbjct:  109 CKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFERHQRVLHHGF 351          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 213 bits (542), Expect = 7.120e-60
Identity = 106/240 (44.17%), Postives = 155/240 (64.58%), Query Frame = 1
Query:   10 PMDHTVDLTPTPGFKAELS--DANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAEN-FERHQRVLH 720
            P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +    P      A+  + RYL  T+ + + LGG L L A++D+DFCS+R  G+S +G+ +FLG +PIIWSS++Q  VT +T EAEY++LR++V D+MWL+ LL  LG  +Q   P+ EDN ACI WA+D  +SK  RH HVSYH  KE V    I + ++ T  Q+AD+FTK L+  N F++  RVLH
Sbjct:  757 PVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNNGFKKFSRVLH 995          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: UPI00098DD449 (uncharacterized protein LOC109818890 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DD449)

HSP 1 Score: 173 bits (438), Expect = 1.870e-48
Identity = 94/239 (39.33%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
            TPM+  + L+     + E  D  +Y+S+VG+L ++   TRP++ + V  + R    P   H + A+R+ RY+KGT S  L      D  L  +SDSD+  D  D KS +G+V ++GD    W SK Q  VT ST EAEY+A  S V   +WLR+LL +L  PQ EPT +  DN + I  A + +   +++H H  YH  +E +S   ++M ++KTHDQVADIFTK L  E F + + +L
Sbjct:  145 TPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVFMKLRSLL 380          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A836YH34_9ROSI (Mitochondrial protein n=2 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836YH34_9ROSI)

HSP 1 Score: 166 bits (419), Expect = 1.030e-46
Identity = 84/233 (36.05%), Postives = 142/233 (60.94%), Query Frame = 1
Query:   10 PMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLG--GDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 702
            P+DH + LT + G  + L+D + YR +VG + ++   TRP+LA+ VH L +  + P   H +AA +V RY+KGT  + + L   G+L L AF D+D+   +   +S+TGY + LG AP+ W +K Q  V+ S+ EAEY ++ ++V +I WLR++L DL   Q  PT +  DN A +  AS+ +  ++ +H  +  H+ +E++  G I+   ++T +Q AD+FTK + +  F++
Sbjct:   21 PVDHNLALTQSEG--SLLADPSQYRRLVGRMIYLTI-TRPDLAYAVHILSQFMDKPRQPHLDAAHQVLRYIKGTPGQGIMLPSTGELELTAFCDADWAKCKDTRRSITGYCIMLGRAPVSWRAKKQTTVSRSSAEAEYRSMATTVCEITWLRNILQDLNEKQFRPTKLFCDNQAALHIASNPVFHERTKHIEIDCHVVREKMQQGIIQTAHVRTKEQPADLFTKPVGSTQFQK 250          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A2M4CK71_ANODA (Putative pol polyprotein (Fragment) n=2 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK71_ANODA)

HSP 1 Score: 174 bits (441), Expect = 2.520e-46
Identity = 100/239 (41.84%), Postives = 139/239 (58.16%), Query Frame = 1
Query:    7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGD--LVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
            TPMD T  +  T   K EL D + YRS+VG+L +VA   RP++A +V  L R    P  K + AA+RV RYL GT + SLRLGGD    L AFSDSD+  D    KS TGY+LF G   I W+S+ Q  VT S++EAEY+AL  + ++++W R LL D+G  Q+ PT + EDN  C+++ +   ISK+++H        ++ V    I++ +  T D  ADI TKAL          V+
Sbjct:  579 TPMD-TGYVKDTEKGK-ELEDISKYRSVVGSLMYVATTARPDIAASVSVLGRCFEKPTEKDWVAAKRVIRYLIGTVNWSLRLGGDRDYTLEAFSDSDWAGDHTTRKSTTGYILFYGGGAIAWTSRRQNCVTLSSMEAEYIALGETCQEVIWTRRLLEDMGEVQKSPTLIQEDNQGCLKFITSERISKRSKHIDTKACFVRDLVKKKIIKLNYCPTEDMRADILTKALGTVKHNHFSTVI 815          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A6B9KLA8_9VIRU (Gag-Pol polyprotein n=2 Tax=Atrato Retro-like virus TaxID=2689360 RepID=A0A6B9KLA8_9VIRU)

HSP 1 Score: 174 bits (440), Expect = 6.220e-46
Identity = 100/239 (41.84%), Postives = 139/239 (58.16%), Query Frame = 1
Query:    7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGGD--LVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
            TPMD T  +  T   K EL D + YRS+VG+L +VA   RP++A +V  L R    P  K + AA+RV RYL GT + SLRLGGD    L AFSDSD+  D    KS TGY+LF G   I W+S+ Q  VT S++EAEY+AL  + ++++W R LL D+G  Q+ PT + EDN  C+++ +   ISK+++H        ++ V    I++ +  T D  ADI TKAL          V+
Sbjct: 1133 TPMD-TGYVKDTEKGK-ELEDISKYRSVVGSLMYVATTARPDIAASVSVLGRCFEKPTEKDWVAAKRVIRYLIGTVNWSLRLGGDRDYTLEAFSDSDWAGDHTTRKSTTGYILFYGGGAIAWTSRRQNCVTLSSMEAEYIALGETCQEVIWTRRLLEDMGEIQKSPTLIQEDNQGCLKFITSERISKRSKHIDTKACFVRDLVEKKIIKLNYCPTEDMRADILTKALGTVKHNHFSTVI 1369          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A2N9GYZ6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GYZ6_FAGSY)

HSP 1 Score: 162 bits (410), Expect = 9.780e-46
Identity = 89/230 (38.70%), Postives = 131/230 (56.96%), Query Frame = 1
Query:   22 TVDLTPTPGFKAE----LSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLG-GDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENF 696
            T  + PTP         L D   YRS+VG L + A +TRP++AF V+ + +  + P   HF  A+R+  YLKGT  + +    G L L AF+D+D+  D  D +S +G V+FLG+ PI W SK Q  V+ S+ EAEY +L +   ++ WLR +L DL         +  DN++ +  AS+ +   + +H  V YH  +E+V  G + + FI THDQ+ADIFTKAL +  F
Sbjct:    8 TTPIAPTPTLSTTTTDLLLDPTPYRSLVGALQY-ATFTRPDIAFAVNCVCQFMHQPSTIHFATAKRILHYLKGTLDKGILFQPGPLALTAFTDADWARDASDRRSTSGVVIFLGNNPITWLSKKQHTVSRSSTEAEYRSLATGATELAWLRQVLCDLQLYLPSAPLIWCDNTSALALASNPVFHGRTKHIEVDYHFVRERVVRGDLSLQFISTHDQLADIFTKALPSTRF 236          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 173 bits (438), Expect = 1.150e-45
Identity = 94/239 (39.33%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESLRLGG--DLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRVL 717
            TPM+  + L+     + E  D  +Y+S+VG+L ++   TRP++ + V  + R    P   H + A+R+ RY+KGT S  L      D  L  +SDSD+  D  D KS +G+V ++GD    W SK Q  VT ST EAEY+A  S V   +WLR+LL +L  PQ EPT +  DN + I  A + +   +++H H  YH  +E +S   ++M ++KTHDQVADIFTK L  E F + + +L
Sbjct: 1101 TPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVFMKLRSLL 1336          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: UPI0012459BFF (uncharacterized protein LOC115972055 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI0012459BFF)

HSP 1 Score: 166 bits (420), Expect = 1.150e-45
Identity = 86/234 (36.75%), Postives = 141/234 (60.26%), Query Frame = 1
Query:    7 TPMDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESL--RLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFER 702
            +PM+  + L+   G    L DA  YR ++G L ++   +RP++A+ VH+L +    P   H +AA R+ +Y+KGT  + +   +  DL L+AF D+D+       KS+TGY +FLGD+ I W SK Q  V+ S+VEAEY ++ ++  ++ WL +LL DL  P + P  +  DN A I  +++L+  ++++H     H  + +V  GTI+MF++ + +Q+ADIFTKAL  + F R
Sbjct:  150 SPMEQQLKLSKADG--ELLKDAGQYRRLIGKLMYLT-LSRPDIAYAVHRLSQYLAQPRIPHMKAATRILQYIKGTPGQGVFFPVESDLQLKAFCDADWAGCPDTRKSLTGYCVFLGDSLISWRSKKQDIVSRSSVEAEYRSMATTTCEVTWLLYLLRDLHIPHERPVLLYCDNQAAIHISANLVFHERSKHIEADCHKVRNRVLDGTIKMFYVSSRNQLADIFTKALGVDQFSR 380          
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Match: A0A482ZNW2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZNW2_9GAMM)

HSP 1 Score: 164 bits (416), Expect = 1.510e-45
Identity = 84/224 (37.50%), Postives = 134/224 (59.82%), Query Frame = 1
Query:   52 KAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQRTQNDPEPKHFEAAERVFRYLKGTQSESL---RLGGDLVLRAFSDSDFCSDRIDGKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIFTKALNAENFERHQRV 714
            ++EL+D ++Y+S VG+L ++A  TR ++AF V+ + R  + P   H+ A +R+FRYL+GT    L   R  G      +SD+D+  D  D KS TGY+  +G   + W  K Q +V  ST E+EY+AL S+ ++ +W+R L +DLG PQ +PT + EDN + I  A +     +++H  + YH  +EQVS   I + +  T D +ADI TK +  E FE+ +++
Sbjct:  115 ESELTDQSLYQSAVGSLLYLATRTRLDIAFAVNNVARYCSKPTKPHWIAVKRIFRYLRGTTHFGLLYSRGSGAPTPIGYSDADWGGDCNDHKSTTGYLFQIGGTAVTWKCKKQSSVALSTAESEYMALSSAAQEAVWIRELNSDLGNPQSQPTLIYEDNQSAIAMAKNPQFHGRSKHIGIKYHFIREQVSNDKICLQYCPTEDMIADILTKGIGPEKFEKLRKM 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK8.190e-16288.48Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK7.120e-6044.17Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI00098DD4491.870e-4839.33uncharacterized protein LOC109818890 n=1 Tax=Cajan... [more]
A0A836YH34_9ROSI1.030e-4636.05Mitochondrial protein n=2 Tax=Salix suchowensis Ta... [more]
A0A2M4CK71_ANODA2.520e-4641.84Putative pol polyprotein (Fragment) n=2 Tax=Anophe... [more]
A0A6B9KLA8_9VIRU6.220e-4641.84Gag-Pol polyprotein n=2 Tax=Atrato Retro-like viru... [more]
A0A2N9GYZ6_FAGSY9.780e-4638.70Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A151RPT4_CAJCA1.150e-4539.33Retrovirus-related Pol polyprotein from transposon... [more]
UPI0012459BFF1.150e-4536.75uncharacterized protein LOC115972055 n=1 Tax=Querc... [more]
A0A482ZNW2_9GAMM1.510e-4537.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig111contigH-akashiwo_Contig111:731745..732482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4959.XP_002770616.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size738
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.27e-42
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,47E39@766764|Debaryomycetaceae
DescriptionTransposable element
Cds size726
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.9738972-UTR-H-akashiwo_Contig111:731744..7317561681387084.9738972-UTR-H-akashiwo_Contig111:731744..731756Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig111 731745..731756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.9837134-CDS-H-akashiwo_Contig111:731756..7324821681387084.9837134-CDS-H-akashiwo_Contig111:731756..732482Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 731757..732482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig111.8.1prot_H-akashiwo_Contig111.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig111 731757..732482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig111.8.1

>prot_H-akashiwo_Contig111.8.1 ID=prot_H-akashiwo_Contig111.8.1|Name=mRNA_H-akashiwo_Contig111.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=242bp
MDHTVDLTPTPGFKAELSDANMYRSMVGTLAWVANWTRPELAFTVHKLQR
TQNDPEPKHFEAAERVFRYLKGTQSESLRLGGDLVLRAFSDSDFCSDRID
GKSVTGYVLFLGDAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDIMWLRH
LLADLGCPQQEPTPVLEDNSACIEWASDLLISKKNRHFHVSYHLAKEQVS
LGTIRMFFIKTHDQVADIFTKALNAENFERHQRVLHHGFSA*
back to top

mRNA from alignment at H-akashiwo_Contig111:731745..732482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig111.8.1 ID=mRNA_H-akashiwo_Contig111.8.1|Name=mRNA_H-akashiwo_Contig111.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=738bp|location=Sequence derived from alignment at H-akashiwo_Contig111:731745..732482+ (Heterosigma akashiwo CCMP452)
TGTGCGACACCGATGGATCACACTGTTGATCTGACGCCTACCCCTGGCTT CAAGGCTGAACTCTCCGACGCGAATATGTACAGGTCTATGGTTGGCACGT TGGCCTGGGTTGCGAACTGGACGAGGCCGGAGCTGGCTTTTACGGTTCAC AAGCTTCAACGCACTCAGAATGACCCAGAACCCAAGCATTTCGAGGCGGC CGAGCGTGTATTTCGTTATCTTAAAGGTACTCAGTCTGAATCGTTGCGAC TGGGTGGCGATCTGGTGCTACGTGCGTTCTCTGATTCGGATTTCTGCTCT GACCGTATTGATGGCAAGTCTGTTACAGGCTACGTTCTGTTTCTGGGTGA CGCGCCTATCATTTGGTCCTCAAAGCTTCAAGGGGCAGTCACTACCTCCA CAGTGGAAGCGGAGTATCTCGCTCTTCGATCATCAGTCAAAGACATCATG TGGCTCCGGCATCTTCTTGCTGATCTTGGGTGCCCCCAGCAGGAGCCTAC TCCTGTTCTAGAAGACAATAGTGCCTGCATTGAGTGGGCAAGTGACTTAT TGATCTCCAAAAAGAATAGGCATTTCCATGTATCCTATCATCTTGCTAAG GAGCAGGTGAGCCTTGGGACTATCAGGATGTTCTTCATTAAGACTCATGA CCAGGTGGCTGATATTTTTACCAAAGCTCTCAATGCAGAAAATTTTGAAA GGCACCAGAGGGTGCTGCATCATGGTTTCAGTGCCTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig111:731745..732482+

>mRNA_H-akashiwo_Contig111.8.1 ID=mRNA_H-akashiwo_Contig111.8.1|Name=mRNA_H-akashiwo_Contig111.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=726bp|location=Sequence derived from alignment at H-akashiwo_Contig111:731745..732482+ (Heterosigma akashiwo CCMP452)
ATGGATCACACTGTTGATCTGACGCCTACCCCTGGCTTCAAGGCTGAACT
CTCCGACGCGAATATGTACAGGTCTATGGTTGGCACGTTGGCCTGGGTTG
CGAACTGGACGAGGCCGGAGCTGGCTTTTACGGTTCACAAGCTTCAACGC
ACTCAGAATGACCCAGAACCCAAGCATTTCGAGGCGGCCGAGCGTGTATT
TCGTTATCTTAAAGGTACTCAGTCTGAATCGTTGCGACTGGGTGGCGATC
TGGTGCTACGTGCGTTCTCTGATTCGGATTTCTGCTCTGACCGTATTGAT
GGCAAGTCTGTTACAGGCTACGTTCTGTTTCTGGGTGACGCGCCTATCAT
TTGGTCCTCAAAGCTTCAAGGGGCAGTCACTACCTCCACAGTGGAAGCGG
AGTATCTCGCTCTTCGATCATCAGTCAAAGACATCATGTGGCTCCGGCAT
CTTCTTGCTGATCTTGGGTGCCCCCAGCAGGAGCCTACTCCTGTTCTAGA
AGACAATAGTGCCTGCATTGAGTGGGCAAGTGACTTATTGATCTCCAAAA
AGAATAGGCATTTCCATGTATCCTATCATCTTGCTAAGGAGCAGGTGAGC
CTTGGGACTATCAGGATGTTCTTCATTAAGACTCATGACCAGGTGGCTGA
TATTTTTACCAAAGCTCTCAATGCAGAAAATTTTGAAAGGCACCAGAGGG
TGCTGCATCATGGTTTCAGTGCCTGA
back to top