mRNA_H-akashiwo_Contig111.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig111.5.1
Unique NamemRNA_H-akashiwo_Contig111.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A4S8L2_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S8L2_OSTLU)

HSP 1 Score: 123 bits (309), Expect = 7.360e-33
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 ADFALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWPAAT 228
            A FALLFDCDGVIVETEELHRLAYNGAFEAF L++DG+ VEW   YYD LQNTVGGGKPKM+++F  D   WP +T
Sbjct:   40 ARFALLFDCDGVIVETEELHRLAYNGAFEAFDLKIDGEGVEWVVKYYDVLQNTVGGGKPKMRWHFNEDKKAWPTST 115          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: F0Y3E9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3E9_AURAN)

HSP 1 Score: 119 bits (297), Expect = 2.110e-31
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   10 ALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWPA 222
            ALLFDCDGV+VETEELHRLAYN AF AFGLE  G PVEWS  YYD LQNTVGGGKPKMK++FT     WPA
Sbjct:    1 ALLFDCDGVLVETEELHRLAYNEAFAAFGLETGGAPVEWSVAYYDVLQNTVGGGKPKMKFHFTETVKEWPA 71          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A0A7S0I014_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I014_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 4.490e-31
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   10 ALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGG-WPAAT 228
            ALLFDCDGVIVETEELHRLAYN AF  FGLEV GKPV+W+  YYD LQNTVGGGKPKM++YF    GG WP  T
Sbjct:   49 ALLFDCDGVIVETEELHRLAYNQAFADFGLEVGGKPVDWTVPYYDVLQNTVGGGKPKMRWYFMETCGGEWPVCT 122          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A0A7R9ZCV6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCV6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 5.090e-31
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    4 DFALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWPA 222
            D+AL+FDCDGVI+ETEELHRLAYN AFEA  L +DG+PV W+ +YYD LQNTVGGGKPKM Y+F    G +P+
Sbjct:   31 DYALIFDCDGVIIETEELHRLAYNAAFEAADLRIDGEPVVWTVEYYDVLQNTVGGGKPKMFYHFRETVGAFPS 103          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A0A7S4FAW9_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FAW9_CHRCT)

HSP 1 Score: 118 bits (295), Expect = 9.290e-31
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   10 ALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWP 219
            ALLFDCDGV+VETEELHR AYN AFE FGL ++G+PV WS  YYDKLQNTVGGGKPKM Y+FT  A  WP
Sbjct:   37 ALLFDCDGVLVETEELHRTAYNKAFEEFGLTINGEPVVWSVSYYDKLQNTVGGGKPKMFYHFTQTADAWP 106          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A0A7R9YQV6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YQV6_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 1.460e-30
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   10 ALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWPAA 225
            ALLFDCDGVIVETEELHRLAYN AF +F   +DGKP+ WS +YYD LQNTVGGGKPKMK++F N+  GWPA+
Sbjct:   29 ALLFDCDGVIVETEELHRLAYNAAFSSFECTIDGKPLVWSVEYYDVLQNTVGGGKPKMKWHFGNN--GWPAS 98          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A0A835XQG6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XQG6_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 1.570e-30
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   10 ALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWPA 222
            ALLFDCDGVIVETEELHR AYN AFEAFG  +DG P+ W+T+YYD LQNTVGGGKPKMKY+F N+  GWP+
Sbjct:   63 ALLFDCDGVIVETEELHRKAYNAAFEAFGCAIDGVPLVWTTEYYDVLQNTVGGGKPKMKYHFKNN--GWPS 131          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A0A2V0NMP2_9CHLO (HAD subfamily IA n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NMP2_9CHLO)

HSP 1 Score: 117 bits (293), Expect = 3.450e-30
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   10 ALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWPAAT 228
            AL+FDCDGVIVETEELHR AYNGAFEAFGL V G+P EW T YYD+LQNTV GGK KMKY+F+N+  GW  AT
Sbjct:   49 ALIFDCDGVIVETEELHRRAYNGAFEAFGLTVKGEPCEWPTKYYDRLQNTVAGGKGKMKYHFSNN--GWEVAT 119          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: A0A8J5X279_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X279_DIALT)

HSP 1 Score: 117 bits (292), Expect = 3.750e-30
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   10 ALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGG-WPAAT 228
            ALLFDCDGV+VETEELHR AYN AF  FGLEV  + V WS +YYDKLQNTVGGGKPKM+Y+FT   GG WPA T
Sbjct:   44 ALLFDCDGVLVETEELHRTAYNMAFAEFGLEVGNEAVVWSVEYYDKLQNTVGGGKPKMRYHFTQTCGGEWPAVT 117          
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Match: L1JYV8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYV8_GUITC)

HSP 1 Score: 116 bits (291), Expect = 4.800e-30
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    7 FALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKLQNTVGGGKPKMKYYFTNDAGGWPAA 225
            FALLFDCDGVIV TEELHRLAYNGAF+ +  E++G+PV WS +YYD LQNTVGGGKPKMK++F N+  GWP +
Sbjct:   71 FALLFDCDGVIVLTEELHRLAYNGAFQDYSAEINGQPVNWSVEYYDVLQNTVGGGKPKMKWHFNNN--GWPTS 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A4S8L2_OSTLU7.360e-3373.68Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
F0Y3E9_AURAN2.110e-3177.46Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S0I014_9EUKA4.490e-3175.68Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7R9ZCV6_9STRA5.090e-3168.49Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4FAW9_CHRCT9.290e-3175.71Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7R9YQV6_9CHLO1.460e-3073.61Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A835XQG6_9CHLO1.570e-3076.06Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2V0NMP2_9CHLO3.450e-3075.34HAD subfamily IA n=1 Tax=Raphidocelis subcapitata ... [more]
A0A8J5X279_DIALT3.750e-3074.32Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
L1JYV8_GUITC4.800e-3071.23Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig111contigH-akashiwo_Contig111:396746..397189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog242159.ABP00080
PFAMsHAD_2
Model size232
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.21e-33
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota,37PX8@33090|Viridiplantae,34JJC@3041|Chlorophyta
Ec32 ortholog descriptionHaloacid dehalogenase-like hydrolase
Ec32 orthologEc-05_004330.1
DescriptionHaloacid dehalogenase-like hydrolase
Cds size228
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.9262013-CDS-H-akashiwo_Contig111:396745..3968471681387084.9262013-CDS-H-akashiwo_Contig111:396745..396847Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 396746..396847 +
1681387084.937983-CDS-H-akashiwo_Contig111:397061..3971871681387084.937983-CDS-H-akashiwo_Contig111:397061..397187Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 397062..397187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig111.5.1prot_H-akashiwo_Contig111.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig111 396746..397187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig111.5.1

>prot_H-akashiwo_Contig111.5.1 ID=prot_H-akashiwo_Contig111.5.1|Name=mRNA_H-akashiwo_Contig111.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
ADFALLFDCDGVIVETEELHRLAYNGAFEAFGLEVDGKPVEWSTDYYDKL
QNTVGGGKPKMKYYFTNDAGGWPAAT
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mRNA from alignment at H-akashiwo_Contig111:396746..397189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig111.5.1 ID=mRNA_H-akashiwo_Contig111.5.1|Name=mRNA_H-akashiwo_Contig111.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig111:396746..397189+ (Heterosigma akashiwo CCMP452)
GCGGATTTTGCTCTCCTCTTTGACTGTGATGGAGTGATTGTGGAAACCGA GGAGCTGCACAGACTTGCGTACAACGGTGCTTTTGAGGCATTCGGGCTAG AGGTAATATGCACTGTGTGTGTGACACAAAGAATCAAATGATCAACACTG AATGCGCCCACCTTTCACTTGGACGGCCAACCTCACCTGGGGAAATGTCC AGACTGTCTTCCAAAGCTGTTGCTTGTGTGCCGCCCCGCCGCCCGCGCAC CGCCGCCGCTGCCTTCGCCGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCG CCGCCTCCGCCGCTAGGTGGACGGCAAGCCCGTGGAGTGGTCCACCGACT ACTACGACAAGCTGCAGAACACCGTGGGCGGCGGGAAACCCAAGATGAAG TACTACTTCACGAACGATGCCGGCGGGTGGCCCGCGGCCACGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig111:396746..397189+

>mRNA_H-akashiwo_Contig111.5.1 ID=mRNA_H-akashiwo_Contig111.5.1|Name=mRNA_H-akashiwo_Contig111.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig111:396746..397189+ (Heterosigma akashiwo CCMP452)
GCGGATTTTGCTCTCCTCTTTGACTGTGATGGAGTGATTGTGGAAACCGA
GGAGCTGCACAGACTTGCGTACAACGGTGCTTTTGAGGCATTCGGGCTAG
AGGTGGACGGCAAGCCCGTGGAGTGGTCCACCGACTACTACGACAAGCTG
CAGAACACCGTGGGCGGCGGGAAACCCAAGATGAAGTACTACTTCACGAA
CGATGCCGGCGGGTGGCCCGCGGCCACG
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