mRNA_H-akashiwo_Contig111.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig111.4.1
Unique NamemRNA_H-akashiwo_Contig111.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig111contigH-akashiwo_Contig111:396204..396790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size269
Hectar predicted targeting categorysignal peptide
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.6207125-UTR-H-akashiwo_Contig111:396203..3962961681387084.6207125-UTR-H-akashiwo_Contig111:396203..396296Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig111 396204..396296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.630127-CDS-H-akashiwo_Contig111:396296..3964251681387084.630127-CDS-H-akashiwo_Contig111:396296..396425Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 396297..396425 +
1681387084.6451743-CDS-H-akashiwo_Contig111:396745..3967901681387084.6451743-CDS-H-akashiwo_Contig111:396745..396790Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 396746..396790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig111.4.1prot_H-akashiwo_Contig111.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig111 396297..396790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig111.4.1

>prot_H-akashiwo_Contig111.4.1 ID=prot_H-akashiwo_Contig111.4.1|Name=mRNA_H-akashiwo_Contig111.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MNSSLVLLFFAAALLSHSCSAFVTKAQPHVTPRNARNKMLHMKADFALLF
DCDGVIVE
back to top

mRNA from alignment at H-akashiwo_Contig111:396204..396790+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig111.4.1 ID=mRNA_H-akashiwo_Contig111.4.1|Name=mRNA_H-akashiwo_Contig111.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=587bp|location=Sequence derived from alignment at H-akashiwo_Contig111:396204..396790+ (Heterosigma akashiwo CCMP452)
CACGGATTATATTATTGCATTCTATAAGGAACGGCTTCTTCTGTGATACA
TAAAAGACTGAACTGAACTGGCTTCTTCTGTGGGCACAAAACCATGAATT
CTTCGCTCGTGCTGCTGTTTTTCGCCGCTGCCTTGCTCAGCCACAGCTGC
AGCGCTTTCGTCACAAAGGCCCAACCTCATGTTACTCCAAGAAATGCGAG
AAATAAAATGCTGCATATGAAGGTAGGTGTGTTGCCATCACTTTTTGTTT
GCAGGACAGTGTATACAAAAAGTGCGATGGCAAGCTGTTTGTGATATAAT
ACCTCATCGGCTGGTATTGATTCGAAAGGCCCAGAACTAGGATTGGGAGA
ACGTACCCAATGGATGCACCTCTTTGCTATACAGTACTATACCTACTACT
CTCCCTCCGAATTGGTCCTCCACACTCCATACACATGGCAGCCTCAACCT
AGAGTTTCATTTTCACATAGAGGTTCACTATTAAAAAAAAACTTTCAGTC
TATTATTTAGTTACAATTTCTCTTACTGTACCTACTAACTAGGCGGATTT
TGCTCTCCTCTTTGACTGTGATGGAGTGATTGTGGAA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig111:396204..396790+

>mRNA_H-akashiwo_Contig111.4.1 ID=mRNA_H-akashiwo_Contig111.4.1|Name=mRNA_H-akashiwo_Contig111.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig111:396204..396790+ (Heterosigma akashiwo CCMP452)
ATGAATTCTTCGCTCGTGCTGCTGTTTTTCGCCGCTGCCTTGCTCAGCCA
CAGCTGCAGCGCTTTCGTCACAAAGGCCCAACCTCATGTTACTCCAAGAA
ATGCGAGAAATAAAATGCTGCATATGAAGGCGGATTTTGCTCTCCTCTTT
GACTGTGATGGAGTGATTGTGGAA
back to top