mRNA_H-akashiwo_Contig111.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig111.14.1
Unique NamemRNA_H-akashiwo_Contig111.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig111.14.1 vs. uniprot
Match: A0A7S3XWM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWM9_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 3.300e-25
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 2 
Query:   35 SVAKSAARQLEEELKKPPQGPEQVLALVQGFVDTYPSLKKERIYNAVLKGVGPMVKL 205
            + ++   RQLEEELKKPPQGPEQVLALVQGFVDTYPSLKKERIYNAVLKGVGPMVKL
Sbjct:   52 AASQERVRQLEEELKKPPQGPEQVLALVQGFVDTYPSLKKERIYNAVLKGVGPMVKL 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XWM9_HETAK3.300e-2587.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig111contigH-akashiwo_Contig111:1127673..1132975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size270
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.741472-CDS-H-akashiwo_Contig111:1127672..11278751681387084.741472-CDS-H-akashiwo_Contig111:1127672..1127875Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 1127673..1127875 -
1681387084.7497094-CDS-H-akashiwo_Contig111:1132908..11329751681387084.7497094-CDS-H-akashiwo_Contig111:1132908..1132975Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 1132909..1132975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig111.14.1prot_H-akashiwo_Contig111.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig111 1127673..1132975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig111.14.1

>prot_H-akashiwo_Contig111.14.1 ID=prot_H-akashiwo_Contig111.14.1|Name=mRNA_H-akashiwo_Contig111.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=90bp
GRSFIGKTRQSQRRQERSAPTRGRIEKATTRSRAGACLGPRVCRHLPFLE
ERKNLQCSAERCGTHGKTVKGKCWQPTFFFLVYLSKNTQR
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mRNA from alignment at H-akashiwo_Contig111:1127673..1132975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig111.14.1 ID=mRNA_H-akashiwo_Contig111.14.1|Name=mRNA_H-akashiwo_Contig111.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5303bp|location=Sequence derived from alignment at H-akashiwo_Contig111:1127673..1132975- (Heterosigma akashiwo CCMP452)
GGGCGGAGCTTCATAGGCAAGACGCGGCAATCGCAGCGTCGCCAAGAGCG
CAGCGCGCCAACTAGAGGTTGTGGGGGGGGGTGGGGTGTGTTAGGGGGCT
CTTCTTCTTTTTTCCCTTCTATATATACTTTTTTCATGGACATCATGAAG
TAAAATAATAATATAACCTACTGACAGTAGAACTTTGCTAGCCTTGTTGT
TGAGTGCTGGGTGCTTGTGCAATTTATAAGTATACTCCTGTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTGGGTTAAAACAGAATATATATATATA
TATATATATATATATCGGCTGTGCGACCGGGAGGAGGATCTGAGGTGGGA
GCTGGGTTTTCTCAAGGACCAGTTCATCTCAAATGGATACCCTGTGCGTG
AAGTGGACAGGGTGTTTGCCTCTTATGTGCCTGGGGTGGAGGTGGAGGAG
GAGGAAGACAAGCCTACCATTTTTGCTCCCTTTGTGCCTGGTTTTTCTGA
AAAGTTCACCAAGCTGGTGCGCGCCCATGGGGTGGAGGTGGTGTTCACAA
AGCCAGTGTCATTGCAGAGTGAGTTGTGCAACCTAAAACCCCCCAGAGAC
AGGCTGCGCGCAAGGATGTGGTCTACAAGGTGGATTGTGAAGAATGCGGG
TGTCCTACATTGGGGAGACTGCACAACGGTTCACTGACAGGGCAAAGCAG
CATCAGTATAGCGTGCGGACTGAGGATGACAACAATGGCTTTTTGTCCAT
GCAGCACACCACCATGGAGTAGGAGGGGAGGAGGAGAGGGAACTGGGGTG
GAGCTGTTCAAGTGGGATGAAGCTCAGTTCTTGGACGAGATCGCCACTGG
AAGAGAAGGAAAATCAAGGAGTCCCTTTACATCAATGCCTACAAGGCCAA
GCAGGGAACTAGCCTGATGAACCTGGAGAAAGGGGCTCGGGTTGATCCAT
GCTGGGGTGCACTCAATGACCTGATCCTTGAGGAAGGAGAGAGAAGGGTG
AAGGCTCGCCAGAAATGGGTAAGGAGGTTTGGCAAGAAGATGGGTGCTGG
CAAGGGTGGGAGGATTTCTTGGAGCCAAAGGCCACGACTCAGGAGGAGTG
ACAGACTGATGAAGAAGCATCGGGTCTCGCATCCGGACGAGGGAAGACCC
GGCGCGGTCTCGCGCGCTCCTCGGGCGATGAAGCTGAATGTCTGGGGTGG
CGAGGAAAGCTATTCTGTCAGTCTGGAACAAGAAGAGGGAAAGTCGGGTG
GCAAGGGCCGGGCGAAGAGGGCGAGGAAGAGGAGGGTGCGAATCTCGTGA
TGTGTATTCTGTATTTCCATTCTTTTTTTTTTTTCTACTGTTTTGTGATG
TTGGCAGCAGGGATGGAAGGAGGAGAAGAAGGAGAGGGAGAGGTGTAACC
GTTTCAGTTTTTGTCTTTTCGGCTATTGGTGTTGTTGTGCTGCTGGACCA
CCTTCATTACCGTGATGGGACCTGGTTGGAGTTTGGCCAACTTGGTGACT
CTGTGAAGAAGGCATGACTTCATGTCGAAACGTCGGGAGCTGGAGAGGCG
TATCATTTTCTAGAAGATTAATTAATTGTTCCGTACCATCAGTGATCACT
TTCATTTCAATATATATATATATATATATATATATATATATATATATATA
TATATGCAGGAGGAAGAGGTGGGAGAGGCAGGGAGGCTGGCCTGGTGGGA
TGGTTGGGCAGAAGAAACGGGATGGCTTGATGGAAAAGAGGAGGGAGGAA
CAGCGGATCCAGAAGGGGAAACTTCTGGGCCTGGAGCAGAATGGGGGGGA
GGGACAAGGTGGAGGTAGAAGATGGAAGAAAGGGTGATGCGGTGGATGGA
GAGGGGAAAAGGGAGATGTGGAGAAGGTGTACTGCAGCGGCAGCACTGCT
GGCGGGATCATGGCTTGGCCTGGCTCTTTGGAGAACAGGAAGATAGCAAA
GGGGAGGAGGGGTAAGGGACATCAGAGGCAGCTGATGAAGAGGGCGCCCA
CCCATAGGGGATGGCCCACCAAGACATGGAAAGGCTGTGCGCAGTTCTTG
GCGGATGAGGATTACTGGTATGCGGACGAGGATGGGCCCCGACCGAGGGT
CATAGCATTAGGGGAGAGCGAGGAGGATGACTATATGGACATACTTGAAA
GGTTGATGAGGCACTGGGCGGGTCTGGCCAGGGAAGGCAAGCTGCAGTGG
TCAGTTGTCTTGGCGAGATGGTTTGGTATGTTGGGTATGCAGCGATGGGG
AGGTCATGTCTTGAGACATGGTGAGTGCCTTTGGGACTCAGAAGCTTTCA
GGGAGACATGGGTGGAGGCTGAGGCTGACTGGCAGGTGGCTTTAGACAAC
TACGGAATCCGGGAAGGATGGGAGGAGCATTGCAATGAACATGGGTGCTG
TGGGCAGGAAGAGAACGGAGGTGAGTGGAAAGTGATCTAGAAGAAGGTGC
CATGGTGGAAATCCTGGTACATGCTGGGTCGAGGTTGGCGGGTGGGTGGA
TATACTGAAGAGCAGTAGTACTGGAAGGATAGCGTGCTGGTTGGGATTTG
GAATGACATCGGGAAATAGCAGTATCAAACGGCTTGGAGATATTTGATAG
TGGTTTGTTCTGAGAGCGGGAGATAAAAATGGCAACTTATGCGGGCTTGT
GGTGGGGCTTATGACAGTGGGTATGGCGATGGTGCAGGTCTGGTTGTCGC
CGCAGGAGGGCACTCCCTCCTAGTGTGAGTGAATTGCCGAGACCTTTATA
AACTAACTTTAACATCATCATCATCATCATATATATATATATATATATAA
ATACATATATGAATCTCTGTTCCCTTCCCCTGTGGCATTCTCTCGTTTCA
CCTATACTGAAATCTGTGGCAGAAACCTCTGTACATTTATTTGTATTGAC
ACACGATCGCAATGTCAAATAAAAAATAAAAAATAAATATATGCAATATA
CACAGTAGTTTTCGTATTCTCATTTTCAAGATTGCTTTGTTCTTTGGAGC
GGTTTTCCTTGGCAACAACGCAGAAGATGGGCATCAGTTGCACATTTACC
ACATTCAAAGACCACTTTATATGGGACGGACGATGTTTGCGATTCACGGT
CTCTTTGTAATTCAAGCACTTCGTGCACTCTCCGTTTGGCCTTGTGCTGC
GTATTGAGATCTCACTTTTCAATATATTTAATACATATATAATATAAACT
GTTGGGGGTATGATGATGATGATGATGTTTAAATTAGTTTCAAGTCTAGC
CTAACTGTTGGGGGTATATGATAGATCTGTGAAGCTTATTCCCGTTTTGG
TATCAATATAGAGTACCACCTGTATATTTTTGCTTTGGTCATTTGTGATT
ATTGTAGAAAAGCCTATTTGTATCATGAAATCATGTGTGATTTGTCTTGC
TTAGCCTACCAACAACAACAGCAGCAGCACAGCAGTAGCAGTGGTTGTTG
CATACAGCTACTATCCTAGAGGGACGGGCCCTGGCCCCACAATCATAGTA
AATTCCTCTTCTTCAACTCAAAAACATTTAGATTCTATCCACGTTCTACT
ACTATACTTTTCAGGCTCTGCTTTGCGGCGGCTCTCTTGGGCTTGCTTGC
TACCCAGCTTGCTAAATTCAATGTATTACATTCAGAGACTACTCTCTATG
GGACCGATGTCTGTGATTCGCGGTCTCTTTTTGTAATTTGAACATTCCAT
GCAGTTTCTGTGTGAACTAGTGCTGCGATATAGAAGATCTCGCTTTTCGA
TACATGGGTATGATAGATCTTCGACGCTTATTTGAGTTTTTGTATTATCA
ACTGGAATACTACCGATATATATATTGGCGGGGGGTTATCTGATTGGCCA
TATAATTGGAATACTTTGTTGTTTTAAACAATCAATATTACAGTATATTT
CTGGAATTGAAACCAATGAGCTCTTGGAGATGGCAAATGGCAAATGGAGT
TTCATAATTTATGAAAATGGAGAAAAAATATATATATTCAGAGAAATTTA
GCACCAACATCATAGTACATATATCAATATGATACTAGAAATCTTCATCA
GAAAGCGGTTTTCCTTGCTTAGCACCATCAACAACAGCAGCAGCAGCAGC
AGCAGCAGCAGCACAGCAGTATCTGGCAACATTTGTTGTAGTATAGCTAG
TATCATAGGGACGAAGCCTAGTCTCGCACCTCAACTTCCATTATTCTTGA
CATAATCTTCTTGTGGATTTAGGCTTGGTTGCTACCCTAGCTTGCCAAAT
TTTATTGTATTATATATATACACAAGGGTTTACTCACATATTGATCTAAA
TATATGGATATAATATTATATATCGAAGCTACTACTAGGGGCTAGCTAGT
TTTGGCTTGTTTTCCAGGGAAGCGGTTTGAAAGGCTAGACTGTAAACTAA
GCAATCTACCAACATATACATTATTATTCAACATGTATATATATGTAACG
TGTAATACTCATTCTAGTTCTAGTATATTATCATACATCATCACCGGGAT
ACCTTTAAAAACTTAAGTTAGATGAGGCTAAGTAACACCATCGTCATTGT
ATATATATATTATATAGGTGAGGACGTACAAGGCTGCTGCGGAAGAGCGC
CGTGCTACTTTCTGCCCCTTGATAGTGACTGTGGAGGGTATTACCCACCA
GTCCATACAGGTCTTCCTCAAGCGCATTGCTGCTTGGCTCTCGGCAAAGT
GGCAAAAACCTCTCTCAACGGTCAGCAACTGGGTGCGTGTCCGTGTGCAG
TTCGCGCTTATCAAAGCGGTAGATCTGCGGACCAGGGCTCCAGGAAGAGG
TGGAGGAGCTCAGGGTTCGAGGATGGCGAGGGGACTGCCATTCTCTTCCA
GAGATAGTGGGGTGTGCTGTATTTGATGTTTTGTATTGATTTGGGTTTTG
GGATTTCATGTGTAGGTTTTGGTATATTACTTACCACAGGGACATCTAAT
TAGATGCAAGGCATAGGTTGTTTTGTTTAAATTTAACTATCTCTATTATA
TTATTAAACATATATTATACGTATGCCATTACTGTTGGCACATGCAACAT
TATATATATGAGTTTTAATAATTACTTGGCTGTGTGTGCTGTACATCCAG
GAAGAATTGAAAAAGCCACCACAAGGTCCCGAGCAGGTGCTTGCCTTGGT
CCAAGGGTTTGTAGACACCTACCCTTCCTTGAAGAAAGAAAGAATCTACA
ATGCAGTGCTGAAAGGTGTGGGACCCATGGTAAAACTGTGAAAGGAAAAT
GTTGGCAGCCCACTTTTTTTTTTTTGGTTTACTTATCAAAGAATACTCAA
CGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig111:1127673..1132975-

>mRNA_H-akashiwo_Contig111.14.1 ID=mRNA_H-akashiwo_Contig111.14.1|Name=mRNA_H-akashiwo_Contig111.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=270bp|location=Sequence derived from alignment at H-akashiwo_Contig111:1127673..1132975- (Heterosigma akashiwo CCMP452)
GGGCGGAGCTTCATAGGCAAGACGCGGCAATCGCAGCGTCGCCAAGAGCG
CAGCGCGCCAACTAGAGGAAGAATTGAAAAAGCCACCACAAGGTCCCGAG
CAGGTGCTTGCCTTGGTCCAAGGGTTTGTAGACACCTACCCTTCCTTGAA
GAAAGAAAGAATCTACAATGCAGTGCTGAAAGGTGTGGGACCCATGGTAA
AACTGTGAAAGGAAAATGTTGGCAGCCCACTTTTTTTTTTTTGGTTTACT
TATCAAAGAATACTCAACGC
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