mRNA_H-akashiwo_Contig111.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig111.10.1
Unique NamemRNA_H-akashiwo_Contig111.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig111.10.1 vs. uniprot
Match: A0A7S2UVG1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVG1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.610e-9
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  284 AMFTVVITSVCCMCAVMFVMTERKRMKKGLTFAEAYSLPKAIVVVKALRPGSF 442
            AMFT+VITS+C             RM+KGLTFAEAYSLPKA+VVV+AL P +F
Sbjct:   99 AMFTIVITSICXXXXXXXXXXXXXRMRKGLTFAEAYSLPKAVVVVRALTPQTF 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2UVG1_9STRA9.610e-960.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig111contigH-akashiwo_Contig111:965356..966061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size451
Hectar predicted targeting categoryother localisation
Exons3
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.6815636-CDS-H-akashiwo_Contig111:965355..9654661681387084.6815636-CDS-H-akashiwo_Contig111:965355..965466Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 965356..965466 +
1681387084.6896925-CDS-H-akashiwo_Contig111:965597..9657361681387084.6896925-CDS-H-akashiwo_Contig111:965597..965736Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 965598..965736 +
1681387084.7025738-CDS-H-akashiwo_Contig111:965860..9659581681387084.7025738-CDS-H-akashiwo_Contig111:965860..965958Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 965861..965958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.715399-UTR-H-akashiwo_Contig111:965958..9660611681387084.715399-UTR-H-akashiwo_Contig111:965958..966061Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig111 965959..966061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig111.10.1prot_H-akashiwo_Contig111.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig111 965356..965958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig111.10.1

>prot_H-akashiwo_Contig111.10.1 ID=prot_H-akashiwo_Contig111.10.1|Name=mRNA_H-akashiwo_Contig111.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=116bp
MYKLRSISGAGNLTDCCTTPYSPVDCSLNEGVEYNGQELFCYSVDFYSNF
ECTSCEFTSAVSGVTCYSCCSARNECETHLAMWVTFLTQPLSIYSNVHSS
HHISLLYVRGDVCHD*
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mRNA from alignment at H-akashiwo_Contig111:965356..966061+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig111.10.1 ID=mRNA_H-akashiwo_Contig111.10.1|Name=mRNA_H-akashiwo_Contig111.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=706bp|location=Sequence derived from alignment at H-akashiwo_Contig111:965356..966061+ (Heterosigma akashiwo CCMP452)
ATGTACAAGCTCCGGTCTATTAGTGGTGCGGGAAACCTGACAGACTGTTG
CACAACTCCATATTCGCCCGTAGATTGCTCTCTAAATGAAGGAGTCGAGT
ATAACGGACAGGCAAGACCATTTGTATGACTTCCTCTAGACGATGTTATA
TCCCCTCATTTGTAAGGCTTATTAATACTCATTGGAAAAAAGGTTTAATT
GGCGTTGCTCTTGCCTCCTATTTTGCCGTCCCCTTGAAACAGGAACTTTT
TTGTTATTCTGTAGATTTTTACTCAAATTTTGAATGCACAAGCTGTGAAT
TCACTTCAGCTGTTAGTGGTGTGACTTGCTATAGTTGCTGCTCTGCTCGA
AACGAGTGTGAAACTCATTTGGCTATGTGGGGTGAGCTCATACCTTTGTG
GGCTTTTTAACCATCTGCTTTCAATAAGTATCCCACCCCCACTTCCAAAA
CCCATTGATGTGGCTTTATGTTCCAAAATTTTGACTTCAAGTTCTTTAAT
GGAAGTTACATTCCTGACGCAACCCCTTTCAATCTACAGCAATGTTCACA
GTAGTCATCACATCAGTCTGCTGTATGTGCGCGGTGATGTTTGTCATGAC
TGAGAGGAAACGGATGAAGAAAGGGTTGACATTTGCCGAGGCTTACTCTT
TACCAAAGGCTATTGTTGTTGTAAAAGCACTACGACCAGGTTCATTTGGA
CTGGCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig111:965356..966061+

>mRNA_H-akashiwo_Contig111.10.1 ID=mRNA_H-akashiwo_Contig111.10.1|Name=mRNA_H-akashiwo_Contig111.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig111:965356..966061+ (Heterosigma akashiwo CCMP452)
ATGTACAAGCTCCGGTCTATTAGTGGTGCGGGAAACCTGACAGACTGTTG
CACAACTCCATATTCGCCCGTAGATTGCTCTCTAAATGAAGGAGTCGAGT
ATAACGGACAGGAACTTTTTTGTTATTCTGTAGATTTTTACTCAAATTTT
GAATGCACAAGCTGTGAATTCACTTCAGCTGTTAGTGGTGTGACTTGCTA
TAGTTGCTGCTCTGCTCGAAACGAGTGTGAAACTCATTTGGCTATGTGGG
TTACATTCCTGACGCAACCCCTTTCAATCTACAGCAATGTTCACAGTAGT
CATCACATCAGTCTGCTGTATGTGCGCGGTGATGTTTGTCATGACTGA
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