mRNA_H-akashiwo_Contig1108.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1108.2.1
Unique NamemRNA_H-akashiwo_Contig1108.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1108.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1108contigH-akashiwo_Contig1108:167976..170526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size194
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.1475286-CDS-H-akashiwo_Contig1108:167976..1680731681387084.1475286-CDS-H-akashiwo_Contig1108:167976..168073Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1108 167977..168073 -
1681387084.1561582-CDS-H-akashiwo_Contig1108:170431..1705261681387084.1561582-CDS-H-akashiwo_Contig1108:170431..170526Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1108 170432..170526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1108.2.1prot_H-akashiwo_Contig1108.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1108 167977..170526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1108.2.1

>prot_H-akashiwo_Contig1108.2.1 ID=prot_H-akashiwo_Contig1108.2.1|Name=mRNA_H-akashiwo_Contig1108.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
QVYISYGELSFQQKLLSFGWVDQGEQTDSGSLRGTCVTAARMPLPSTGGG
EGAKGSSHLPPPPD
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mRNA from alignment at H-akashiwo_Contig1108:167976..170526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1108.2.1 ID=mRNA_H-akashiwo_Contig1108.2.1|Name=mRNA_H-akashiwo_Contig1108.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2551bp|location=Sequence derived from alignment at H-akashiwo_Contig1108:167976..170526- (Heterosigma akashiwo CCMP452)
CAGGTATACATCTCTTATGGTGAGCTCAGCTTTCAGCAGAAGCTGCTGAG
CTTTGGCTGGGTAGACCAAGGCGAGCAGACTGACAGCGGATCGCTGTAAG
CTATAATTATTCTACCCCCCCCCTACACACACACCAAGCCCCCAGAACAA
TAAGCAGGTTTGATGATGATGAATTTCCAAACGAACACTCACTCCTTTGA
TCATGATAATAATAATGATAAAAATAAATGATAATAATATTGTTAAGGTA
TTGGTTTTAAAAGTGATGGTGATGAATGATGATGATATCATCAGAAAAAG
ATTTTTCTCTGTTTCGTTAGCAATGACATCATAGTAAATAATATATTCAT
CATTTTTTCAGGAATGGTATACTACTGGTGGTGCACAACACCTTTGCACC
TGGTGATTTACACCCTATACTAGGCCACCGTGGTCAACTGCCTGCATCTT
CTTGCAGTATTTTAGACATGAATGATTATTAGTGTAGATGATACAGAATT
CTTGGTGAGGATCCTAGTCCTACTACTTTCGTCTGTCCTACTTGTTGTGG
TGGAGCTACTATACTCCGTCAACCGGGATAACCCCGTACTTGTGCGGGCT
GTATAGGCTCGGGTGGTAGGCTGGAGGAAGACCAATCTGTTGGCCCCAAC
CCGCATTGCGGATCCAGATCTAACCACAAATAACAGTTGAGCTTAGCTTT
TCCTCAGGCCTATGGACCTTCGTCTGAGGCTCGTGGCCAGCACCTGTGCC
GGTTATGATGATGATGCTCATATTTGTTGTGAACATGGAGGAGAAGGAGG
GCAGAATGTTTCCTTAACAGCTGAGGTACATGAGACAATGATGAATAATG
GTGGTGGTTGGTGGCCATGGCCATTGCTGATTTCATTTTTCATTTTTGTT
GTGCACTTCTTTCTTCTTCTCAATTCATTTACCATCTTCAATTGGTTTTC
ATTCAGTCAGAGGCAGCCTGAAGAAGGCTGGCGGGGGATGGAGAGAGCCG
CCAGCCGCCGTGGCTTGTAGTAGCCGAAGTGCAGCATAGTTGTCATGGAC
TTAATGATTAAAAACCTTTGACATATTGCCTTCTTGGCAGTATGGAGCTA
TACTCGCTGATGATGAAAGCGGTTCTCTGTTTAGACCCAACACCCTGCAA
TGTTTTCCATCTATCCCAAAAGGATCTGGCCTGAGGTACTCTACGCATTC
AATTCAGACTTTTCGTCCCTGCCTCGCTGTGCAAACGATTAACTTCGTTT
TGTGGGCCGCCCTTGCTTGTGAAGGACTGGGTGACTTTCGAGGCGAGTAG
ACTACTGACGCTTCGGCCGAAAAGCAGTTGACCAGAAGGGCGTAAGTAGT
GCCCTCGGACGCTATCTATGCTTTTCTGGATGAAGCCTCTGTCGTTGTTC
GATTGACGGTGAAGAATCCCCCCCTGGGTAGAACCCTGAACAGCACCTGA
CGGTGATGGGCACTCTCCTGCTCATCATGGGTTCCGTCAACCGGGATAGC
CCCGTACTTGTGCGGGCTGTATAGGCTCGGGTGGTAGGCTGGAGGAAGAC
CAATCTGTTGGCCCCAACCCGCATTGCGGATCCAGATCTAACCACAAATA
ACAGTTGAGCTTAGCTTTTCCTCAGGCCTATGGACCTTCGTCTGAGGCTC
GTGGCCAGCACCTGTGCCGGTTATGATGATGGTGCTCAGATTTGTTGTGA
ACATGGAGGAGAAGGAGGGCAGAATGTTTCCTTAACAGCTGAGGTACACG
AGACAACGATGACTAGTGGTGGTGGTGGCCATGGCCATTGCTGATTTCAT
TTTTCATTTTTGTTGTGCACTTCTTTCTTCTTCTCAATTCATTTACCATC
TTCAATTGGTTTTCATTCAGTCAGAGGCAGCCTGAAGAAGGCTGGCGGGG
GATGGAGAGAGCCGCCAGCCGTGGCTTGTTGTAGTAGCCGAAGTGCAGCA
TAGTTGTCATGGACTTAATGATTAAAAACCTTTGACATATTGCCTTCTTG
GCAGTATGGAGCTATACTCGCTGATGATGAAAGCGGTTCTCTGTTTAGAC
CCAACACCCTGCAATATACTACCAATATTAAAAAATGTATTATCTGAAAG
CTGATGATGGCGCCAATATATTATTATTAGGAGAAGAGGGAGATGATATT
CAGTCTTGACTCCTCCAGCTCTTGTGTTAGAAAGTCCTGTCATCGTCACT
CCTAATATTTTTGTGCACTCTCGAGCCTTACGGCCGGCCCCAACCCTTCC
CTGTTGGGGAAGAAGGGGTATGTACAGACCGTACTCTGGTACTCCACGCA
CGCAGCATGCTTGTCTCACACATTTTTCATGTATTAAACGTTATATACTA
CTTACTACTGCCTATATCTATCTATGATATTGATCATCAACTATTACAGA
GAGACACCCCATCGTTGCTTTGATGGTGCCCACTATCTTCTTCCGCACAA
CAGGCGTGGTACCTGCGTGACGGCTGCCCGCATGCCCCTCCCATCCACTG
GCGGCGGCGAGGGGGCCAAGGGCTCCTCCCACCTCCCCCCCCCCCCTGAC
G
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1108:167976..170526-

>mRNA_H-akashiwo_Contig1108.2.1 ID=mRNA_H-akashiwo_Contig1108.2.1|Name=mRNA_H-akashiwo_Contig1108.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig1108:167976..170526- (Heterosigma akashiwo CCMP452)
CAGGTATACATCTCTTATGGTGAGCTCAGCTTTCAGCAGAAGCTGCTGAG
CTTTGGCTGGGTAGACCAAGGCGAGCAGACTGACAGCGGATCGCTGCGTG
GTACCTGCGTGACGGCTGCCCGCATGCCCCTCCCATCCACTGGCGGCGGC
GAGGGGGCCAAGGGCTCCTCCCACCTCCCCCCCCCCCCTGAC
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