mRNA_H-akashiwo_Contig1107.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1107.7.1
Unique NamemRNA_H-akashiwo_Contig1107.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1107.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1107contigH-akashiwo_Contig1107:268771..269081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15716593
PFAMsHis_Phos_1
Model size150
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue2.68e-05
EggNOG OGs28M0P@1|root,2QTHF@2759|Eukaryota,39JEE@33154|Opisthokonta
DescriptionPhosphoglycerate mutase family
Cds size147
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.867459-CDS-H-akashiwo_Contig1107:268772..2688241681387083.867459-CDS-H-akashiwo_Contig1107:268772..268824Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1107 268773..268824 -
1681387083.8795147-CDS-H-akashiwo_Contig1107:268986..2690811681387083.8795147-CDS-H-akashiwo_Contig1107:268986..269081Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1107 268987..269081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1107.7.1prot_H-akashiwo_Contig1107.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1107 268773..269081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1107.7.1

>prot_H-akashiwo_Contig1107.7.1 ID=prot_H-akashiwo_Contig1107.7.1|Name=mRNA_H-akashiwo_Contig1107.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
RTKQTYENIRAGLAEVAGADDEGRYYTREDPRVRELEWGNFQETEQMEN
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mRNA from alignment at H-akashiwo_Contig1107:268771..269081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1107.7.1 ID=mRNA_H-akashiwo_Contig1107.7.1|Name=mRNA_H-akashiwo_Contig1107.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=311bp|location=Sequence derived from alignment at H-akashiwo_Contig1107:268771..269081- (Heterosigma akashiwo CCMP452)
AGAACCAAGCAAACCTATGAAAACATCAGGGCAGGACTGGCTGAAGTCGC
AGGGGCAGATGACGAAGGAAGATACTATACCCGAGAAGATCCTCGGTGAG
CTCACACATGTGATGCAGCACAGCACTCTGTGTGATGATACAATACTAAG
GTTGAGACTTCTCTGTAGTGTTGTTCTGTACCACTGATAATCACTATCAT
CTCATAGGTGTTGGACAGTGATGATAATAACCCCCCCCAAAATAATATCA
ATAAAAGAGTGCGCGAGCTGGAGTGGGGAAACTTTCAAGAAACTGAGCAG
ATGGAGAATGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1107:268771..269081-

>mRNA_H-akashiwo_Contig1107.7.1 ID=mRNA_H-akashiwo_Contig1107.7.1|Name=mRNA_H-akashiwo_Contig1107.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig1107:268771..269081- (Heterosigma akashiwo CCMP452)
AGAACCAAGCAAACCTATGAAAACATCAGGGCAGGACTGGCTGAAGTCGC
AGGGGCAGATGACGAAGGAAGATACTATACCCGAGAAGATCCTCGAGTGC
GCGAGCTGGAGTGGGGAAACTTTCAAGAAACTGAGCAGATGGAGAAT
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