mRNA_H-akashiwo_Contig1107.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1107.4.1
Unique NamemRNA_H-akashiwo_Contig1107.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 464 bits (1195), Expect = 5.670e-160
Identity = 221/315 (70.16%), Postives = 269/315 (85.40%), Query Frame = 1
Query:    1 LLDLLWKYKEVFIAPNKIPTTTPLVSHAIQS-EGVAYTKPYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            +++LLW+Y++VF AP  IPTTTPL++HAIQS + VAY KPYR+ PA  +KAEE+ ++LLKQGVI ESSS FNAPIV+V KK+G+ RMCLDLR+LN IT  +KFPLPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PKGV W DDCEW++Q +K
Sbjct:   63 MMELLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIK 377          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 467 bits (1201), Expect = 2.920e-158
Identity = 223/315 (70.79%), Postives = 269/315 (85.40%), Query Frame = 1
Query:    1 LLDLLWKYKEVFIAPNKIPTTTPLVSHAIQS-EGVAYTKPYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            +LDLLW+Y++VF AP  IPTTTPL++HAIQS + VAY KPYR+ PA  +KAEE+ ++LLKQGVI ESSS FNAPIV+V KK+G+ RMCLDLR+LN IT  +KFPLPT REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PKGV W DDCEW++Q +K
Sbjct:   63 MLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIK 377          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 386 bits (992), Expect = 8.680e-132
Identity = 182/239 (76.15%), Postives = 208/239 (87.03%), Query Frame = 1
Query:  226 LVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            +V+KKTG+ RMCLDLRSLN IT  AKFPLPT REMFDQL G++YFSS+DMLWAYWS+PLR+ D+HKTAFT+RNKKY + VMCFGLTNAPATFSHLVNKVFQG  +DFALCFLDDVL ++G +FS HL  LE+IF RMI ANLKFKLPKCLFGA+QVP+LGHI TREG+KPDPKKIEA+K ++RP +KKQVRQ LGLASYYRQFV  F+  A PLY LTK  PKGVEWTDDCEW++Q LK
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAIKKLQRPQTKKQVRQVLGLASYYRQFVPNFAATAAPLYTLTKKEPKGVEWTDDCEWAFQNLK 239          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A4Y2NDG8_ARAVE (Retrovirus-related Pol polyprotein from transposon 17.6 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NDG8_ARAVE)

HSP 1 Score: 253 bits (647), Expect = 1.570e-79
Identity = 129/276 (46.74%), Postives = 184/276 (66.67%), Query Frame = 1
Query:  115 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            P  +P A +E+A+ +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PLP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP +   +R FLGL +YYR+FV+ FS IA+PL++LT +T     WT++CE S+ +LK
Sbjct:   18 PRHLPLARKEEADHLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPKTVHDLRSFLGLCTYYRRFVKNFSTIARPLHKLT-ETKSNFNWTEECEKSFNSLK 291          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A4Y1ZZ71_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZZ71_ARAVE)

HSP 1 Score: 251 bits (641), Expect = 1.770e-77
Identity = 128/276 (46.38%), Postives = 183/276 (66.30%), Query Frame = 1
Query:  115 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            P R+P A +E+AE +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PLP   +  D L GS +F+++D+   YW + +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+++  ANLK    KC F   +V +LGH+I+ EG+K DP KI+AV    RP +   +R FLGL +YYR+FV+ FS IA+PL++LT +T     WT++CE S+ +LK
Sbjct:  104 PRRLPLARKEEAEHLVQEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQVEVRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLSNLRKVFQKLQNANLKLSPKKCRFFQKEVTYLGHVISAEGVKTDPGKIKAVVDWPRPETIHDLRSFLGLCTYYRRFVKNFSRIARPLHKLT-ETKSNFNWTEECEKSFNSLK 377          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A4Y2I107_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2I107_ARAVE)

HSP 1 Score: 254 bits (650), Expect = 1.690e-76
Identity = 130/276 (47.10%), Postives = 183/276 (66.30%), Query Frame = 1
Query:  115 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            P R+P A +E+A+ +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PLP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + +KVM FGL NAP TF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP +   +R FLGL +YYR+FV+ FS IAKPLY+LT +      WT++CE S+ +LK
Sbjct:  106 PRRLPLARKEEADNLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPETFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLYKLT-EAKSNFNWTEECEKSFNSLK 379          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A4Y2QUF0_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QUF0_ARAVE)

HSP 1 Score: 246 bits (628), Expect = 1.930e-76
Identity = 128/276 (46.38%), Postives = 181/276 (65.58%), Query Frame = 1
Query:  115 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            P R+P A +E AE +V+E+++ G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  + LP   +  D L GS +F ++D+   YW + +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG+K DP+KI+AV    RP     +R FLGL +YYR+FV+ FS IA+PL++LT +      WTD+CE S+ +LK
Sbjct:   18 PRRLPLARKE-AERLVNEMVENGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKVSYRLPRIDDTLDSLNGSQWFMTLDLKSGYWQVEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLIYLDDIII-VGQTFEEHLNNLRKVFQRLQKANLKLNPKKCRFFQKEVAYLGHVISEEGVKTDPEKIKAVVDWPRPDKIHDIRSFLGLCTYYRRFVKNFSTIARPLHKLT-EAKSNFNWTDECEKSFNSLK 290          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A4Y2QNW9_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QNW9_ARAVE)

HSP 1 Score: 254 bits (650), Expect = 5.130e-76
Identity = 130/276 (47.10%), Postives = 184/276 (66.67%), Query Frame = 1
Query:  115 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            P R+P A +E+A+ +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PLP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP +   +R FLGL +YYR+FV+ FS IAKPL++LT +      WT++CE S+ +LK
Sbjct:  270 PRRLPLARKEEADNLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWTEECEKSFNSLK 543          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A4Y2HRQ6_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HRQ6_ARAVE)

HSP 1 Score: 251 bits (642), Expect = 8.010e-76
Identity = 128/276 (46.38%), Postives = 183/276 (66.30%), Query Frame = 1
Query:  115 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            P R+P A +E+AE +V+E+++ G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PLP   +  D L GS +F+++D+   YW + +R  DR KTAFT  +  + + VM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG+K DP+KI+AV    RP     +R FLGL +YYR FV+ FS IA+PL++LT +      WTD+CE S+ +LK
Sbjct:  139 PRRLPLARKEEAERLVNEMVENGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDSLNGSQWFTTLDLKSGYWQVEIRPEDREKTAFTTGHGLWQFNVMPFGLCNAPATFERLMETVLRGLSSEACLIYLDDIII-VGQTFEEHLNNLRKVFQRIQKANLKLNPKKCRFFQKEVAYLGHVISEEGVKTDPEKIKAVVDWPRPDKIHDIRSFLGLCTYYRLFVKNFSTIARPLHKLT-EAKSNFNWTDECEKSFNSLK 412          
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Match: A0A4Y2S6G1_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2S6G1_ARAVE)

HSP 1 Score: 245 bits (625), Expect = 1.370e-75
Identity = 127/276 (46.01%), Postives = 181/276 (65.58%), Query Frame = 1
Query:  115 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLK 942
            P R+P A +E+A+ +V E++   +IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PLP   +  D L GS +F+++D+   YW I +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK  L K  F   +V +LGH+I+ EG+K DP+KI+AV    RP +   +R FLGL +YYR+FV+ FS IAKPL++LT +      W ++CE S+ +LK
Sbjct:   18 PRRLPLARKEEADHLVKEMVDNEIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKWRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWLEECEKSFNSLK 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1107.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK5.670e-16070.16Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK2.920e-15870.79Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK8.680e-13276.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4Y2NDG8_ARAVE1.570e-7946.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1ZZ71_ARAVE1.770e-7746.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2I107_ARAVE1.690e-7647.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2QUF0_ARAVE1.930e-7646.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2QNW9_ARAVE5.130e-7647.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2HRQ6_ARAVE8.010e-7646.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2S6G1_ARAVE1.370e-7546.01Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1107contigH-akashiwo_Contig1107:228305..229246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4113.PGSC0003DMT400044133
PFAMsRVP_2,RVT_1,Retrotrans_gag,rve,zf-CCHC
Model size942
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.29e-72
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RRH@33090|Viridiplantae,3G8MV@35493|Streptophyta
DescriptionDNA RNA polymerases superfamily protein
Cds size942
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.000128-CDS-H-akashiwo_Contig1107:228304..2292461681387084.000128-CDS-H-akashiwo_Contig1107:228304..229246Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1107 228305..229246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1107.4.1prot_H-akashiwo_Contig1107.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1107 228305..229246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1107.4.1

>prot_H-akashiwo_Contig1107.4.1 ID=prot_H-akashiwo_Contig1107.4.1|Name=mRNA_H-akashiwo_Contig1107.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=314bp
LLDLLWKYKEVFIAPNKIPTTTPLVSHAIQSEGVAYTKPYRIPPAHQEKA
EEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKA
KFPLPTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTAFTLRNKK
YCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFST
HLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKI
EAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGV
EWTDDCEWSWQTLK
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mRNA from alignment at H-akashiwo_Contig1107:228305..229246-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1107.4.1 ID=mRNA_H-akashiwo_Contig1107.4.1|Name=mRNA_H-akashiwo_Contig1107.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=942bp|location=Sequence derived from alignment at H-akashiwo_Contig1107:228305..229246- (Heterosigma akashiwo CCMP452)
CTGTTGGACCTACTATGGAAATACAAAGAAGTATTCATAGCGCCAAACAA GATACCAACAACAACACCGTTGGTAAGTCATGCAATTCAGAGTGAGGGAG TAGCATACACCAAACCATACCGTATACCTCCAGCTCACCAAGAAAAGGCG GAAGAAATGGTAGATGAACTGCTCAAACAAGGGGTCATTGAAGAATCATC AAGTGAGTTCAATGCACCAATAGTGCTAGTCCAAAAGAAGACAGGGGACT TGAGAATGTGTTTAGACCTACGTTCTCTAAACCAGATTACAAAGAAGGCA AAGTTTCCCTTGCCTACAACAAGAGAAATGTTTGATCAACTAGCAGGCAG TTGGTATTTCTCAAGCATGGATATGTTATGGGCATATTGGAGTATACCAC TCAGAGAGACAGACAGGCACAAAACAGCATTCACACTAAGAAACAAGAAA TATTGCTGGAAAGTGATGTGTTTTGGACTTACAAATGCACCAGCAACATT TTCACATCTGGTGAACAAAGTCTTCCAAGGATACAACAACGACTTTGCAT TATGTTTCCTGGATGACGTACTAGCTCACTCAGGAAAGGAATTCAGTACA CACTTACTGAACTTGGAAAAGATTTTCAAGAGGATGATAGCAGCTAACCT GAAGTTCAAGTTGCCGAAATGCTTGTTTGGAGCTTCACAAGTACCATGGC TGGGACATATCATCACAAGAGAAGGGATAAAACCTGACCCCAAGAAGATA GAAGCAGTGAAAGGAATGAGAAGACCTGCATCGAAAAAACAAGTCAGGCA ATTTCTAGGGCTGGCATCCTACTACAGACAGTTCGTAGAGGGATTTTCAG AAATTGCAAAACCACTATACCAACTGACGAAGGATACACCAAAAGGGGTG GAATGGACCGATGACTGTGAATGGTCATGGCAGACACTAAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1107:228305..229246-

>mRNA_H-akashiwo_Contig1107.4.1 ID=mRNA_H-akashiwo_Contig1107.4.1|Name=mRNA_H-akashiwo_Contig1107.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=942bp|location=Sequence derived from alignment at H-akashiwo_Contig1107:228305..229246- (Heterosigma akashiwo CCMP452)
CTGTTGGACCTACTATGGAAATACAAAGAAGTATTCATAGCGCCAAACAA
GATACCAACAACAACACCGTTGGTAAGTCATGCAATTCAGAGTGAGGGAG
TAGCATACACCAAACCATACCGTATACCTCCAGCTCACCAAGAAAAGGCG
GAAGAAATGGTAGATGAACTGCTCAAACAAGGGGTCATTGAAGAATCATC
AAGTGAGTTCAATGCACCAATAGTGCTAGTCCAAAAGAAGACAGGGGACT
TGAGAATGTGTTTAGACCTACGTTCTCTAAACCAGATTACAAAGAAGGCA
AAGTTTCCCTTGCCTACAACAAGAGAAATGTTTGATCAACTAGCAGGCAG
TTGGTATTTCTCAAGCATGGATATGTTATGGGCATATTGGAGTATACCAC
TCAGAGAGACAGACAGGCACAAAACAGCATTCACACTAAGAAACAAGAAA
TATTGCTGGAAAGTGATGTGTTTTGGACTTACAAATGCACCAGCAACATT
TTCACATCTGGTGAACAAAGTCTTCCAAGGATACAACAACGACTTTGCAT
TATGTTTCCTGGATGACGTACTAGCTCACTCAGGAAAGGAATTCAGTACA
CACTTACTGAACTTGGAAAAGATTTTCAAGAGGATGATAGCAGCTAACCT
GAAGTTCAAGTTGCCGAAATGCTTGTTTGGAGCTTCACAAGTACCATGGC
TGGGACATATCATCACAAGAGAAGGGATAAAACCTGACCCCAAGAAGATA
GAAGCAGTGAAAGGAATGAGAAGACCTGCATCGAAAAAACAAGTCAGGCA
ATTTCTAGGGCTGGCATCCTACTACAGACAGTTCGTAGAGGGATTTTCAG
AAATTGCAAAACCACTATACCAACTGACGAAGGATACACCAAAAGGGGTG
GAATGGACCGATGACTGTGAATGGTCATGGCAGACACTAAAG
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