mRNA_H-akashiwo_Contig1103.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1103.7.1
Unique NamemRNA_H-akashiwo_Contig1103.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: A0A7S3XX48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX48_HETAK)

HSP 1 Score: 276 bits (706), Expect = 1.760e-87
Identity = 141/155 (90.97%), Postives = 142/155 (91.61%), Query Frame = 1 
Query:    1 MVASEHEYSESIRRRNVPEHIASETDIFCNRELKMSSLKAIGFDMDYTLSRYYQEFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGATMPSFTEARFVNVDTIFTLVDA 465
            MVASEHEYSESIRRRNVPEHIASETDIFCNRELKMSSLKAIGFDMDYTLSRYYQEFDLLAYEGAKEKLVHT     +        DFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGATMPSFTEARFVNVDTIFTLVDA
Sbjct:   65 MVASEHEYSESIRRRNVPEHIASETDIFCNRELKMSSLKAIGFDMDYTLSRYYQEFDLLAYEGAKEKLVHTLGYPEEVLDYVYDADFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGATMPSFTEARFVNVDTIFTLVDA 219
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: A0A835Z4H4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.590e-43
Identity = 75/140 (53.57%), Postives = 102/140 (72.86%), Query Frame = 1 
Query:   46 NVPEHIASETDIFCNRELKMSSLKAIGFDMDYTLSRYYQEFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGATM-PSFTEARFVNVDTIFTLVD 462
            +VP+H+  E D+FCNREL M  +KA+GFDMDYTL++Y+  FDLLA+EGAKEKLVH      +        ++F RGLVIDK+ GNI+K+DRHKY R A+HGF ++ S +RK+ Y    ++ PSF  + FVN+DT+F+LVD
Sbjct:   14 SVPKHVTGERDVFCNRELSMKQIKAVGFDMDYTLAQYFPAFDLLAFEGAKEKLVHKLGYPSQVLEFDYDPNYFTRGLVIDKQRGNIIKMDRHKYVRVAYHGFQKMSSEERKSMYHASFSLTPSFAGSNFVNMDTLFSLVD 153
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: A0A7S2WFZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WFZ8_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.980e-39
Identity = 74/135 (54.81%), Postives = 94/135 (69.63%), Query Frame = 1 
Query:   67 SETDIFCNRELKMSSLKAIGFDMDYTLSRYYQ-EFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGATM-PSFTEARFVNVDTIFTLVDA 465
            S  D+FCNREL M+S++AIGFDMDYTL++Y Q EFD LA++GAK+KLV      +K        +F+VRGL+ID + GN LKIDRHKY R A+HG  E+ S+ RK+ Y       PSFTE  FVN+DT+F  VDA
Sbjct:    9 SVNDVFCNRELGMNSVRAIGFDMDYTLAQYKQPEFDKLAFDGAKQKLVDELGYPKKVLDFEYDHEFWVRGLIIDTQRGNFLKIDRHKYVRVAYHGLTEITSSIRKSIYSRFINKAPSFTEKSFVNMDTLFQFVDA 143
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: B8BUN7_THAPS (Imp-gmp specific 5' nucleotidase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUN7_THAPS)

HSP 1 Score: 142 bits (359), Expect = 2.240e-37
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 1 
Query:   76 DIFCNRELKMSSLKAIGFDMDYTLSRYYQ-EFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQ-TGATMPSFTEARFVNVDTIFTLVDA 465
            D+FCNREL++ +LKA+GFDMDYTL +Y Q  FD LA++GAKEKLVH+     +         ++VRGL+ID + GN LKIDRHKY R A+HGF  + SN RK  YQ T   +PSFTE  FVN+DT+F  VDA
Sbjct:    3 DVFCNRELRVDNLKAVGFDMDYTLVQYQQPNFDQLAFDGAKEKLVHSLGYPEEVLNFEYDHTYWVRGLIIDTQRGNFLKIDRHKYVRVAYHGFQPISSNMRKQLYQRTFNKVPSFTEKYFVNMDTLFQHVDA 134
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: W7T4C7_9STRA (Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4C7_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.170e-37
Identity = 70/133 (52.63%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:   70 ETDIFCNRELKMSSLKAIGFDMDYTLSRYYQEFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGA-TMPSFTEARFVNVDTIFTLVDA 465
            ET++FCNRE+ M  ++AIGFDMDYTL++Y   F+LLAY+GAK+KLV T        +      +F RGLVIDK+ GN++K+DRHKY R+A+HGF+ L S  RK+ Y   +  +P +TE+ FVN+DT+F LVDA
Sbjct:   80 ETEVFCNREINMQQIRAIGFDMDYTLAQYNLAFELLAYDGAKQKLVDTFRYPEAVASFEYDSTYFRRGLVIDKERGNVIKMDRHKYVRQAYHGFSPLPSAVRKSLYMASSENIPLYTESTFVNIDTLFLLVDA 212
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: A0A7S1ZFY4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFY4_TRICV)

HSP 1 Score: 140 bits (353), Expect = 5.710e-36
Identity = 74/135 (54.81%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:   67 SETDIFCNRELKMSSLKAIGFDMDYTLSRYYQ-EFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGAT-MPSFTEARFVNVDTIFTLVDA 465
            S  D+FCNRELK+S +KAIGFDMDYTL++Y+Q +FD LA++GAK+KLV       +         F+VRGL+ID + GN LKIDRHKY R A+HGF  + S  RK  Y      +PSFTE  FVN+DT+F LVDA
Sbjct:  127 SSDDVFCNRELKLSGIKAIGFDMDYTLAQYHQPQFDKLAFDGAKQKLVDALGYPEEVLNFEYDHTFWVRGLIIDTQRGNFLKIDRHKYVRLAYHGFEPISSVTRKHLYNRMFNKVPSFTEKHFVNMDTLFQLVDA 261
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: A0A6V2CWD5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CWD5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.450e-36
Identity = 77/144 (53.47%), Postives = 99/144 (68.75%), Query Frame = 1 
Query:   43 RNVPE-HIASETDIFCNRELKMSSLKAIGFDMDYTLSRYYQE-FDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAY-QTGATMPSFTEARFVNVDTIFTLVDA 465
            R++PE    S+ D+FCNRELK+S+LKA+GFDMDYTL++Y Q  FD LA+EGA++KLV           +     F+VRGL+ID + GN LKIDRHKY R A+HGF  + S  RK  Y +T   +PSFTE  FVN+DT+F  VDA
Sbjct:  185 RDMPEKRPLSQNDVFCNRELKLSALKAMGFDMDYTLAQYKQPAFDKLAFEGARDKLVRALGYPEDVLDLEYDHTFWVRGLIIDTQRGNFLKIDRHKYVRLAYHGFNPISSITRKHLYSRTFNKVPSFTEKSFVNMDTLFQHVDA 328
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: A0A7S4VG98_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VG98_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.810e-35
Identity = 77/144 (53.47%), Postives = 99/144 (68.75%), Query Frame = 1 
Query:   43 RNVPE-HIASETDIFCNRELKMSSLKAIGFDMDYTLSRYYQE-FDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAY-QTGATMPSFTEARFVNVDTIFTLVDA 465
            R++PE    S+ D+FCNRELK+S+LKA+GFDMDYTL++Y Q  FD LA+EGA++KLV           +     F+VRGL+ID + GN LKIDRHKY R A+HGF  + S  RK  Y +T   +PSFTE  FVN+DT+F  VDA
Sbjct:  185 RDMPEKRPLSQNDVFCNRELKLSALKAMGFDMDYTLAQYKQPAFDKLAFEGARDKLVRALGYPEDVLDLEYDHTFWVRGLIIDTQRGNFLKIDRHKYVRLAYHGFNPISSITRKHLYSRTFNKVPSFTEKSFVNMDTLFQHVDA 328
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: A0A7S2SLW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLW1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.550e-34
Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:   76 DIFCNRELKMSSLKAIGFDMDYTLSRYYQEFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGATM-PSFTEARFVNVDTIFTLVDA 465
            DIFCNREL M  + A+GFDMDYTL++Y  EFDLLAY GA +KLV            +    F  RGLV+DKK GNI+K+DR+KY R A+HG  +L  ++R+A Y+      PS+T   +VN DT+F LVDA
Sbjct:   30 DIFCNRELAMKGIDAVGFDMDYTLAQYNHEFDLLAYNGAVDKLVALGYPEALRGFQYDPTRFR-RGLVLDKKRGNIIKMDRYKYVRLAYHGSRQLSKSERQAVYRDNLDQQPSYTGKEYVNCDTLFHLVDA 159
[Close]
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Match: K0QYE7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QYE7_THAOC)

HSP 1 Score: 136 bits (343), Expect = 1.640e-34
Identity = 74/141 (52.48%), Postives = 93/141 (65.96%), Query Frame = 1 
Query:   67 SETDIFCNRELKMSSLKAIGFDMDYTLSRYYQE-FDLLAYEGAKEKLVHTPVTRRKCWTMFTILDF------FVRGLVIDKKLGNILKIDRHKYCRKAFHGFAELGSNQRKAAY-QTGATMPSFTEARFVNVDTIFTLVDA 465
            S TD+FCNREL+M +++A+GFDMDYTL++Y Q  FD LA++GAKEKL               +LDF      +VRGL+ID + GN LKIDRHKY R A+HGF  + S  RK  Y +T    PSFTE  FVN+DT+F  VDA
Sbjct:  156 SSTDVFCNRELRMDNIRAVGFDMDYTLAQYQQPAFDQLAFDGAKEKLATLGYPDE-------VLDFVYDHTFWVRGLIIDTQRGNFLKIDRHKYVRVAYHGFNAISSGMRKEIYSRTFNKQPSFTEKTFVNMDTLFKFVDA 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1103.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XX48_HETAK1.760e-8790.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z4H4_9STRA1.590e-4353.575'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2WFZ8_9STRA2.980e-3954.81Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
B8BUN7_THAPS2.240e-3756.06Imp-gmp specific 5' nucleotidase (Fragment) n=1 Ta... [more]
W7T4C7_9STRA3.170e-3752.63Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsid... [more]
A0A7S1ZFY4_TRICV5.710e-3654.81Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6V2CWD5_9STRA6.450e-3653.47Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4VG98_9STRA3.810e-3553.47Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SLW1_9STRA1.550e-3451.15Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K0QYE7_THAOC1.640e-3452.48Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1103contigH-akashiwo_Contig1103:253454..261680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps32319
PFAMs5_nucleotid
Model size465
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.67e-38
EggNOG OGsKOG2469@1|root,KOG2469@2759|Eukaryota,2XB0Z@2836|Bacillariophyta
Ec32 ortholog description5'-nucleotidase
Ec32 orthologEc-05_000950.1
Description5' nucleotidase family
Cds size465
COG categoryF
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.3482306-CDS-H-akashiwo_Contig1103:253453..2535401681387083.3482306-CDS-H-akashiwo_Contig1103:253453..253540Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1103 253454..253540 -
1681387083.3678648-CDS-H-akashiwo_Contig1103:257716..2578061681387083.3678648-CDS-H-akashiwo_Contig1103:257716..257806Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1103 257717..257806 -
1681387083.376453-CDS-H-akashiwo_Contig1103:258232..2583421681387083.376453-CDS-H-akashiwo_Contig1103:258232..258342Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1103 258233..258342 -
1681387083.3850532-CDS-H-akashiwo_Contig1103:261357..2614601681387083.3850532-CDS-H-akashiwo_Contig1103:261357..261460Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1103 261358..261460 -
1681387083.395098-CDS-H-akashiwo_Contig1103:261605..2616801681387083.395098-CDS-H-akashiwo_Contig1103:261605..261680Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1103 261606..261680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1103.7.1prot_H-akashiwo_Contig1103.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1103 253454..261680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1103.7.1

>prot_H-akashiwo_Contig1103.7.1 ID=prot_H-akashiwo_Contig1103.7.1|Name=mRNA_H-akashiwo_Contig1103.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=155bp
MVASEHEYSESIRRRNVPEHIASETDIFCNRELKMSSLKAIGFDMDYTLS
RYYQEFDLLAYEGAKEKLVHTPVTRRKCWTMFTILDFFVRGLVIDKKLGN
ILKIDRHKYCRKAFHGFAELGSNQRKAAYQTGATMPSFTEARFVNVDTIF
TLVDA
back to top

mRNA from alignment at H-akashiwo_Contig1103:253454..261680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1103.7.1 ID=mRNA_H-akashiwo_Contig1103.7.1|Name=mRNA_H-akashiwo_Contig1103.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=8227bp|location=Sequence derived from alignment at H-akashiwo_Contig1103:253454..261680- (Heterosigma akashiwo CCMP452)
ATGGTTGCTTCAGAACATGAATATTCAGAATCAATTAGAAGACGAAATGT
TCCTGAGCACATTGCTTCAGAAACTGTAAGTCCTTTGACCACAAAATATC
GCCCTCCTACGCGTTCGGTATGGAGTGCCTTTGCACTGTACTGCTGATGG
AAGTTACGCTGCCAAATAGTAATGCGGCGGCAGGTTCCGTCTTGGCGTTT
CCACCCAAACTGTTCTGCAGGACATATTTTGCAACCGGGAGTTGAAGATG
TCAAGTCTCAAGGCTATTGGTTTTGATATGGACTACACATTGTCTCGTTA
CTACCAGGAGTTTGATCTTCTAGGTGAGTTTTGACTTCTTGGGCACCATT
TTTCTGTTTTATTTTTTTATTTTTATTTTTTCATGATATGATAAGATGAA
AAGAGTGGAAAAGCACATTTCTATCTTACAGCGCCGTGGCAGCAATATAC
TGGTGTGAAAAACTGCGTGCTCACCGCCAACTGGGGCTTTGGTCCTGATG
TGCCGTCAGTTCCTCAGTTGGATGGCCCGGACTAGATTTTTTCCAGGCCA
TCCATTAGCAAAGAAAGAGGACTCGGCTCGGAAAGTTTGGCAATTCACTG
TTTCGCCAGGGCCACATTGCCATGCATCTCCTGCTTACCAGGCTTGGCAC
AAGCTGTGCATGGACAAATTTTCATGATCATACTGGATGTGGGATGGCGG
ATAGGCAACCCCCCATGAGGTAGTGTATATAATAATCGCTTGCATTATTG
TTTTTCTTTCTTCTTTACGACCCCCTCCTGTACTCTGGTTGGCCCCAAGG
GGTGGGTTGAAGCTTGTGCCAAGCCTGAGTTTGAGCAGGAGGTCTCACAT
GACATGGGATGTGTCCTGGTGGACTACTTGAACAGCGGCGAGTTCCCGAA
CAAACTGTCTGGGCAAGGCTCCATCCTTTCTCTTGGTTGGACTACTAAAT
TTTCTGGCCCGTTCTACCAACTGCAGAGTTTTCATACATAGAATGCAGCA
GTGATGCCACGGCTCTTCTTCCACAGAGGCTATACAGCAGCTCAATTTAC
ACTTGTTAAAATATAATGTTTCATAACAGCAAGATCGGCCCATGCTACCT
TTTCAACTTGGTGTATTCAAAGCTCTCTGAAGCTCGAGTGGTCAAGCCGT
TACAGGAGGTAAGTTCTGTTGCGATGAATCCTGGGCCGCGAGTTCGATCC
CCAAGGTGCACGAGCAGTCAATGTCCGGTACGGTTTGCACCATGCGCCAG
TCATCACAAATCTTGGAAGTCGAAGGAGGGCAAGGAAAGGATATGATGGC
GATCTGGAGCAGTGACATGGAAGGAGTGGAGCGAGTATCTCCTGAGTGGG
TGGCTGGCGGAAGAGTGCAGCGATCTGACAGAGCGGTAACAGAAGGAAAT
CGTCAGCGATAAAGAATGATCCTCCCGAGGTGCATCATAGGTATGTTCGC
GAGTGCTGGATGGTACGAGGGCGAACACTACTATTGTTGCATAAGCTCAG
AGATGGCTCAACATGGGGCGGGCCTGTAACGGACGATCTTCCTTGGGATG
TGATGAGGAGGGCATCATCATGATGATAATGTATCATTTATAAAATAATA
ATTAATAATAATCATCATAAATAATAATTAATTAGCTATATAACACACTA
GAGCCCAATTGAAGTGTTGGGAGTCGAGAAACGTCATTCGGCGTGCACAT
TTGTCTCGGGCTAACGCCCTCGACAAATGTGCACGCCGGATGACGTTTCG
AGACTCACAACCTTCAAGGGCTCGTAGTAGCGTTATATTGCTGTATCCCA
CGAGGGGGACAACCATATATGACCTCCTATGAAACCGACCGACTACTGTA
GAAGCCAATAAAAACCTCTTGTATCCCTGAAATTCCGAAAAACGCTCAGC
CCTATAAGGGTGACGAGGTTTTTATGTTTTTCCTCGTTTTGGGCCGACAA
GATTTTGGCATGAAATTCCGATCTTCCTTCATTTTAAGAGAATAGTACTG
CACCACTTCCGCAGGGTTTAAGGTTTTCAGGTGCCCGAGGGCCCTTGGGC
CCGAGGGATCGGTTCCTTGGGACCGCAGGGTCTCACTAAAGTGCGGGGTT
TCTTATTATTTCTAATTTTTTGAATTAACGGAAAACGAGTGCCGAGTACT
ATGCACCGGATGGATTCACACGCCTGGGTGTCAGGTAGTTTTGTGATGAT
CGGATGCTAATTAGTTTCGGTCGCCTGCGTGGAGGTCGTCTAGCTCAAGG
CTTGGGTTTGATGGATAAAGCAAATTCAATACCAGTAGGGACTCTTAAAG
TCAAGTCAAGTCCTAATAAAGTTGGTGTCCTGAATGTACACACAAATGAA
ACTTTTAGATTTGAATTTGCATATAAAGCTGATCTCGTCGATATAAATGA
ATGGAAGCTCGGTTTTAAAAAAGCGGACATCAAAAAGAATGAAATTTTTG
GTTTTTAAACTGCAGCTGGGGAATAAATCTGCGTGACCGATAGGACAACC
ACAAGTATGTACATCAACGATTTTCATTTTCGCCGTCTTTCCTGTTTACA
TGCGTATCTTCGCACGGGCGCGCGCCGTCAGAATAGTATTATCTATGATA
TCATCACGCTGCTTTCTTGCAGCCCCACCTAAATTTCTCGTGACATTTTC
CCGAATATGAGCAAGCAGCTGAACTTAAAAGAAATAAAACCGTGCGGGTT
TAACTTATAGATGAAACCGATGAGTTCCCATGGTATGAGCATCAGTCATC
GGCATTGCCGAATGACCCTCTGCACCCATCCTCGGTCGTGGTGGTGTGTG
GTCGAGCTCAGTGATGACGGATGCAGGAGGCGCCTCCTGCATTCATCATC
GCTGTGTACTCCCACTCATCACAGAATCGTCCGTGTCATGGTTGAGCATC
ACAGCTTGGTGCTGGGTGACTTCTGAACCCAACCCAAGGCCATGATGTTC
GAACGTGAATCTGATCTGGCTATGATTGTTCTGGAACAAGAATTTATAAA
ATTCCAAAGAAAATTCTGAAACTTCAGGGCGTCAACCTGAAATCCGAGGG
CGTCAATCTCTCATCCGAGGGTGAAAATCTGTGCTTTTTGCAGGCCTCCT
ATATAACCCCCAGAACCCTCCCAAAAAGGCATTTGTGAAAAAAAAAATCC
CCGAGTTTTCCTGTGCAAAGTGGATTTGTCCCCAGTGGGATAAAATAATA
ATAATATAATTAATAATAAATAATAAACTTTGCGCGCCTCCTCCCCAGAC
GACTGCTCCAAATTGCGCCAAGTCAAACCAGGTCAGCACTAAAGCCCCAG
TCCTCCCCCCCCCCTCCCAACCTTGTTGATGGCCCCAGCTTACGAGGGGG
CAAAGGAAAAACTGGTACACACGCCGGTTACCCGGAGGAAGTGCTGGACT
ATGTTTACGATCTTGGATTTCTTCGTGCGCGGCCTTGTCATCGACAAGGT
GTTGCCTCCCCTCCCCTTCCCTGCCCCCCAAGTGCCATGATGGGCAGTCT
TGGCACAAGATTTTCAGTGTTCTTGTAGGACAGTAGGTTCAAGCGGCTAC
CTACCTTGCATTTTTCAAAATTACCTTGCTTTTTTGTTGGAGTAAGTTTC
AAGAGTATAGTGTAGCGCACGAGTTTGCTTCGGGAGAAATATGAGACGGA
AGCACAGGAAGGCAAAGTGCTGCTTTATGGCACTTTCTTTGATAATGCAA
TTCTTCTTTTTTTTGTGAGGGGGGTTGTTTCGTCGCTTGACACATACAGT
GCTAAACGCCATGAAGGCCACCTATTCAGATCCCCTTTGCCCCCTACCCT
TCTGCCTTTTTTTGTTACCCTGCCCTTCAACCCAACTGGTTCCATGGCTG
GCTGGGGCTGTTGGCGGTGGGTAGAAATTGGGGAACATCCTCAAAATTGA
CCGGCATAAATACTGCCGAAAGGCTTTCCACGGGTTTGCTGAGCTTGGCA
GTAACCAGCGCAAGGTGGGATGGAGTGGGGGGATATATTAATGCATATAT
AGGGAGGATGGATGGGGGGGGCATGTTTTGGGCCATCCAGGATTGCTGTG
TGCAATATATATGCTTATAGAAGCTAGGGGTTCTGCCCCGAAAGTGATTT
GAAAGGCTAGACTTTAAACTAAAAATAATATCATCATCATCATTATTTTA
TTACTTATATTATTGGATGATGGATGCCATATCCTGCAAGGAGGATCTTC
TACTCTTGATCAAGACCTTCCATACCCTTGGAAACCTGCCTGGAGATATA
CTGCATTGTATAGCAGAACTGTATTTCTTCACCAATTTCAGTATAGATAT
TCTGTATTATCCACTTTCTTTCTTTCTTTCTTTCTTTCTCTGTCCAATAC
CTCAGTAAGAGCACTTCAAACGACAGAGGTTGTATGTATCATTTTTTTTT
TTGTCATATTTATTATGTTGTAACATCTTACATATTCATTTTCATGCACA
CACAACGATACATGTATAATTTATTTAAAAACATCATGTACTATTAGTAT
TTTTTTTTGTAGTATAGTATAGCAGTAAAAGGATACGTTTTGGTTTTGTT
TTGTTAAGTAAGTGTTGTGTTTTGTTTGTTTGTTTTTTGTATTTTTCATG
TCAACAGTGCACCGTTGCTCAGACCATCGTCGAACGCGAACATGCGGCAT
TGCAAAATTGACTTTTGCTTTGGGGTGTTGTCTGTGTGTGAGTGAGTGTG
TGTGTGTGTGTGTGTTTTTATTGTTTAATGGTTGATTTGCTTTTGCTTGT
TAGTCAACAATGCACTGATGCTCAAACGATCGCGAACGCGAACATGCGGC
ATTGCAAAGTTGACTAGTTTTACTTGTTGTTGTTGTATTTTGTTTGTTTT
TGTTTTTTTGTTGTTTTTTGGTAGTTATTGGATCGTTTGCTTTTGTTTGT
TTGTTACAGTAATTTTTGCTTCTGTGTGCTATTAGTACACAAACTGAATA
TAACGGCCAAAGCCACACTACATGTAGCATGGTGAAAAGTATCCAGCAGA
TCAAACATGCCAAAATTTCCTACTTCATTCAAGTCATGGCATACCAATTC
CGCGCAGTGTTCAAAGTATAGTAGTTCTGCCTTCATGTCCTGGAATGATC
TAAGAAAGAATGAACCATCCGAGGACTGAAGAACACACCCGTGCAGTGTT
CTGCATCAACAGCAGCAACCAGTATTGGCCAGATTTCTTCAGTGTTCTTT
CTTATATCACAACAACAAGGCCACAGTTTTTGTAAGGTAAAAGTTGCACT
CCCATGATTTCAGCGATCTGCCCCGCATCACAAGTGGAGCGCTTCCCCTA
TCGCAGCAGAGCAGCAAGATTTTGCCTTTCCAATGACGAAGATTTGAACC
CTGAGCAGGTATGCACTCGAAGCGTTCTTCAGTGCAGACTATATCCTCCA
GGTCAACTCAGAACCGTTGTTGGGGGAACTGGCAAGGCTTGATCTCAGCA
GCGAAGCACGCCAAGCATCGTTGAGTCTTTACTGAGTATCCAAGAGCGAA
ACCAAACGATCTTCGGAATTTGGCTTGCATGCATGGGCACAAGCGGAGTG
CAAAAAGAAGGTGGCATGCTATCATTTTACAAGCAATTGCCAACGAGTTC
TGCATGAAACTTGGCTTTGAAGTCCATCATAGCACAATGATGTTAGGCAG
AAGATATGGTTTGATGAGATCGTGAATGCGATTGTGATTTCTCGAGAGAA
GTATAAATGTATGCCATCATCCCTGAATCTGAATTATATCCCTCGACAGA
AAAAAAAAATATTGCGCATTATATTTAGAACCGTTGTCCTATGATTGGGC
TACGGCCTGCAGCGCGCAATATTTGTCATTTTGCTAGTATAGTTTTAGTT
TTATTATCAGGGGTTTTTATAAGTGAAGAGATTTACACCAAGCGCCAAGG
CTTAGTCCAGCAACACTATCTGGAAACAACAGCGATATATAATGGAAACC
CATCGTATAACAAATTGTTCATCACTCAGACAACATCAATGACAAACCGA
CGTGTAATAATAACCACAACACACGGGGGCGAAAGTAGTATATTTTACAT
TGCTAATATTTAAAGAAGAATGGGTCATTATTTGGGAAGACGAGCATTAA
GAAAGGGGGGGCGTGCAAACGGGGGAGGAAGCCAAAAAATTAGGTAGAGC
TCCATTTGCACCCCCGTTCTTTTTTGGACAGTATATGCCCTTCTTCCCCA
ATAGTGACGCATTCTTTATTCGTTTCTACACCAGCCAGCCATAGCTTTTG
ATGCACAGTAGCAATGCACAAGTAACATATCACTATATTAGGGGCTGGGC
CAACAGCCACAACGAGACAAACAAGTCCATAAACAAACCAATACCTAGAC
GGTAATTATATTCATTTAACTACTACTTCTTCTTCTACTAAAATAATATA
TTTCGTGTATGCCAAATCATCATCATCTATTCACTAACTCGGAGGCTGGT
CGTAGAGTTGAGATTCCTCGCAACTCGAAAACCATAAATGGCATGGCAAG
AAGTACCTAGTGCTTCGCAACCAGAGGGAGACTGACCATGTCTATGGGAG
CTTCCTCGACTCGCAGGGTGGAGACAGATGCATTGATCGTGGTAGTGGGT
TGTCAGAGGAAGCGCCAACGGATGAGGCAACCGAAAGACTGGATCTGGGC
CAAAGGGCAAAACAGAGTATGTGGGATTTCGCGCAGGTGGAGCTCCTGCT
GGTCGCTAGCGAAACGCTGTCCGTCAAAGTACTCAGAAGCCACGGCACGT
GCAAGAAGACATTGGTTGTGGCTCAGGAAGTGAGAGGAGCACATTGCATG
GTACAAACGTAGACAATATATTATATACACACACACACACATACAACGCA
GCACCAAAAGATAAGACCAAATGTGAGGGGCGTTATTTTACCACCAACAT
TTGCCATTGCTTCTCCTGCAAAGAACGAGATATCCAGTCCGCGTTTTTTT
TTCTCACAGGACTGCACATTCATTGTGCAAATTGGGCTAACGTTCATTTT
CGTTGAGCCTTAAATGATTTCAAGCGCGTATAGATATAGGCCCGAATAAC
CTCATCAACCGTATCCAATGACAAGGTCGTAATCCTTGAAAATTCAGATA
TGTCTAGAGGGTCACAACAGTACATCAACAATAGCATCACAATTGAATGT
TTGAAAATGATACCCCGCATCCTTTTCGCCCAAAAAACACCCTTATTAGA
CGTCGCCATTGGACACGGTTGATGAGGTTATTCGCAAGGCCTTTTTTTTT
TTTCCCTACGTTTGTTCAGACAATGACACCTCCAGCACCCCGGCAGGCTT
CTCACTCCAACGTCGCCTGATGCCATGGTCTCCGACAACTTCATTGGAAC
GAGTATCTTTCAACATTGCTGACGATTGCTGAACCTCCAGTCTCTTTTAT
GGACTGCATTTCGAAGCGCCTTGATCCGCTTGGCACCATTTTACGTTCCC
GCTCTCCAGGCCTCATCGTAATGGCTCTTTCATCTCGGCCCCTCAATCTC
GATGGTTGGCGCCTGCTCCTTCATGCCGGTGTGTCCAGGAAGTTCGGCTC
CCAGCCTACATCTCCCTGTGCTCGCTACACAACCGTAGCTCCCAAGTCCG
TTTTTCAGCCTGCGGAAGTTAACTTCCTCAGACCGGCCTACTGAACGACT
GGTGGCGCTCAGTTTTCAGCGTCGTGACAAGTCTTGACGATCGCAAAGGC
CATTTTCGCGTGCCCCCGAGAAATTTCTTTGGAACCCCAGAAATTTTTCC
CAAGTAAGCGAATTGCCGATATGATACACTCCAGTGCCAGAGACACACGC
ATACACGGAATTGACCACTAGGGATCGAACCCGCTATCGTTTGCCTCGAA
GCTCGACGCCGTACCCATCGCTCCAATTGCGCTACCTATATCTATATATA
TACACTAGAAAAGCATCTCCCTCACTTTTCGCGCTAAGCTCCCATCTCAC
CAATCAAAACCAGCGAAGAAGAGGGAGAGGAGCAATCCTAGGAGGCCGAG
TTTTAACACATCGATGTATGATTCCACCTTAAGCACGTTCCTGGTTATAC
TGCAATTATTCATCATACAAAGATATATATATATATATACGTACTGAAAT
AGAGTCGCCGCCGCCGGTGGGGGGGGGGGGCTCGCCGCAGGCGGCGTACC
AGACGGGGGCGACGATGCCCTCGTTCACGGAAGCACGGTTCGTGAACGTG
GACACCATCTTCACGCTGGTGGACGCT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1103:253454..261680-

>mRNA_H-akashiwo_Contig1103.7.1 ID=mRNA_H-akashiwo_Contig1103.7.1|Name=mRNA_H-akashiwo_Contig1103.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=465bp|location=Sequence derived from alignment at H-akashiwo_Contig1103:253454..261680- (Heterosigma akashiwo CCMP452)
ATGGTTGCTTCAGAACATGAATATTCAGAATCAATTAGAAGACGAAATGT
TCCTGAGCACATTGCTTCAGAAACTGACATATTTTGCAACCGGGAGTTGA
AGATGTCAAGTCTCAAGGCTATTGGTTTTGATATGGACTACACATTGTCT
CGTTACTACCAGGAGTTTGATCTTCTAGCTTACGAGGGGGCAAAGGAAAA
ACTGGTACACACGCCGGTTACCCGGAGGAAGTGCTGGACTATGTTTACGA
TCTTGGATTTCTTCGTGCGCGGCCTTGTCATCGACAAGAAATTGGGGAAC
ATCCTCAAAATTGACCGGCATAAATACTGCCGAAAGGCTTTCCACGGGTT
TGCTGAGCTTGGCAGTAACCAGCGCAAGGCGGCGTACCAGACGGGGGCGA
CGATGCCCTCGTTCACGGAAGCACGGTTCGTGAACGTGGACACCATCTTC
ACGCTGGTGGACGCT
back to top