mRNA_H-akashiwo_Contig1103.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1103.1.1
Unique NamemRNA_H-akashiwo_Contig1103.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A7S3Z784_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z784_9EUKA)

HSP 1 Score: 192 bits (488), Expect = 1.370e-50
Identity = 126/361 (34.90%), Postives = 194/361 (53.74%), Query Frame = 1
Query:   22 DVSTAYLYGRLKEPRYMEIPLGILSNIDHNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDD-LMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVMALVSEFSHEQIRPTNIPLSHSTMKEINEAKGEPLDKAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKK-GNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNVYEDNMSLIYILNGFGYNRRTK 1098
            D++ A+L+G L+EP YM+IPLG+    DH K+  KL K +YGL  +   WN  F+  +T   + FKR +S P +Y  K E+ ++I L ++ DD  + SSN+D L +N + ++ +K+ IK        LG+E +     +L   K  +  L+ + + E       P+S S  K      GEP D+     +RS IG L ++   TRPDIA+ +  LSR LN P   H +A + LL YLK T    + + + G   +N       +Y DAD     +  +STSG +IF NG LI W SK+Q+ +A+ST E+E +AL   V    ++  +  EIGI ++   ++EDN+  + I       +RTK
Sbjct: 1039 DINNAFLHGFLQEPVYMQIPLGMRDRYDHRKYCCKLNKGLYGLQVSARAWNEEFNNFVTG--LGFKRSVSDPCVYTLKHEHGEMI-LCVYVDDLIICSSNEDELSKNIVKKIEDKYGIKEYKELDFVLGIEVLQRKDHILLSQKAYIQRLLKKHNMEDCNGVRTPMSPS-QKLTRNPDGEPADET---TYRSIIGGLAFVMTCTRPDIAFAVSKLSRYLNAPTKDHMQAALHLLRYLKHTMEFCLHYPRDGGRKWN-------IYVDADHGGCLDTRRSTSGRLIFYNGCLISWKSKRQTVVAKSTAEAEHIALSDAVTDGIWLKNLAKEIGIDFNDATIHEDNIPCLQIAKNPIITQRTK 1385          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A6A3L5P5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L5P5_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.040e-49
Identity = 125/384 (32.55%), Postives = 197/384 (51.30%), Query Frame = 1
Query:    4 MKMSDFDVSTAYLYGRLKEPRYMEIPLGILSNID------HNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVM--ALVSEFSHEQIRPTNIPLSHSTM--KEINEAKGEPLDKAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNV-YEDNMSLIYILNGFGYNRRTKHMLIKLNY 1122
            M++   DV TA+LYG+LKE  YME+P G+   +D       +  +  L +++YGL +A  VWN T D R+    M F+   + P +Y + +  D+ I + L+ DD  + S    ++ +    +AEKF+IK LG ++  LG+E   D +R      QK    +++ +F  E  +P   PL       K       E +DK     +RS +G L ++A  TRPDI+  +  LSR L  P   HW A + ++ YL  T + GI +  G L        +  Y DAD A   +D +S SG+++ + G+ +VW S  Q T+A S+ E+E +AL   VK   ++  +L +IG       V YEDN   + +    GY  RTKH+ I+ ++
Sbjct:   10 MEIEQCDVDTAFLYGKLKEEIYMELPEGLRELLDLAEAEGEDNVVCTLPQSLYGLKQASRVWNETIDKRLKS--MGFEPADADPCVYTRGEGEDECI-VCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGIIQKAYTESIIKKFGQENAKPCLAPLEPGVQLTKGDEPQTEEDIDKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYD-GLLGTQ-----LEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMTLAKNVGYQARTKHIDIRYHF 384          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A178VBX6_ARATH (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178VBX6_ARATH)

HSP 1 Score: 179 bits (453), Expect = 6.630e-49
Identity = 117/378 (30.95%), Postives = 198/378 (52.38%), Query Frame = 1
Query:    1 NMKMSDFDVSTAYLYGRLKEPRYMEIPLGILSNIDHNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQK--VMALVSEFSHEQIRPTNIPLS-HSTMKEINEAK-GEPLDKAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNVYEDNMSLIYILNGFGYNRRTKHMLIKLNY 1122
            NM++   DV TA+L+G L+E  YM  P G       +K  L LK+++YGL ++   WN  FD  +    +K+ R      +Y+KK   D  I+L L+ DD  + S+N   +      L+ +F++K LG +K+ LGME   D    L    Q+  V  ++  F  +  +P + PL  H  +K   + +  E  ++  I  + + IG + +    TRPD+AY++ ++SR ++KP   HW+A+  +L Y++ T    +CF+K   DF      +  YCD+D  +  +  +S +G +  + G+ I W SK Q  +A S+ E+E +AL   VK   ++ G   E+G   D   V+ D+ S I +     ++ RTKH+ I+L++
Sbjct:    6 NMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSDKACL-LKRSLYGLKQSPRQWNLRFDEFMRG--IKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRGAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQE-DFL-----LRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAIALAKNSVHHERTKHIDIRLHH 374          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: Q9ZPU5_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZPU5_ARATH)

HSP 1 Score: 182 bits (462), Expect = 3.780e-47
Identity = 118/378 (31.22%), Postives = 198/378 (52.38%), Query Frame = 1
Query:    1 NMKMSDFDVSTAYLYGRLKEPRYMEIPLGILSNIDHNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQK--VMALVSEFSHEQIRPTNIPLS-HSTMKEINEAK-GEPLDKAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNVYEDNMSLIYILNGFGYNRRTKHMLIKLNY 1122
            NM++   DV TA+L+G L+E  YM  P G       NK  L LK+++YGL ++   WN  FD  +    +K+ R      +Y+KK   D  I+L L+ DD  + S+N   +      L+ +F++K LG +K+ LGME   D    L    Q+  V  ++  F  +  +P + PL  H  +K   + +  E  ++  I  + + IG + +    TRPD+AY++ ++SR ++KP   HW+A+  +L Y++ T    +CF+K   DF      +  YCD+D  +  +  +S +G +  + G+ I W SK Q  +A S+ E+E +AL   VK   ++ G   E+G   D   V+ D+ S I +     ++ RTKH+ I+L++
Sbjct:  921 NMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCL-LKRSLYGLKQSPRQWNLRFDEFMRG--IKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQE-DFL-----LRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHF 1289          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.480e-46
Identity = 120/381 (31.50%), Postives = 198/381 (51.97%), Query Frame = 1
Query:    4 MKMSDFDVSTAYLYGRLKEPRYMEIPLGILSNID------HNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVM--ALVSEFSHEQIRPTNIPLSHST-MKEINEAKGEPLD-KAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNV-YEDNMSLIYILNGFGYNRRTKHMLIK 1113
            M++   DV T +LYG+L+E  YME+P G+   ++       +  +  L +++YGL +A  VWN T D  +    M F+   + P +Y + +  D+ I + L+ DD  + S    ++ +    +AEKF+IK LG ++  LG+E   D +R      QK    +++ +F  E  +P   PL     + + +E + E +  K     +RS +G L ++A  TRPDI+  +  LSR L  P   HW A + ++ YL  T + GI +  G L        +  Y DAD A   +D +S SG+++ + G+ +VW S  Q T+A S++E+E +AL   VK   ++  +L++IG       V YEDN   + +    GY  RTKH+ I+
Sbjct:   10 MEIEQCDVDTVFLYGKLEEEIYMELPEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKS--MGFEPADADPCVYTRGEGEDECI-VCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYD-GLLGTQ-----LEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSIEAEYMALSDCVKECVWMRRLLEDIGPEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIR 381          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: UPI000CD7E7C7 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD7E7C7)

HSP 1 Score: 171 bits (433), Expect = 3.460e-46
Identity = 121/365 (33.15%), Postives = 193/365 (52.88%), Query Frame = 1
Query:   22 DVSTAYLYGRLKEPRYMEIPLGILSNIDHNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVMALVSEFSHEQIRPTNIPLSHSTMKEINEAKGEPLDKA----HIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKP-NVYEDNMSLIYILNGFGYNRRTKH 1101
            DV+ A+LYG L E  YM  P G  S  D    + KL K++YGL +A   WN      ++  +  FK+ ++  +++ +  EN  I+ L ++ DD  +  +++  +EN    L  +F IK LG  K +LG+E I  ++ +  + ++  + L+ EF     +P   PL  + + +    +   LDK+    +I EF+  IGKL ++   TRPDI+Y + ILS+ ++KP   H K    LL YLK  P  G+   K N       LNI+ Y DAD A      +S +G +++   SL+ W SKKQST++RS+ ESE  AL      + +I+ +L + GI    P NV+ DN S + +     ++ +TKH
Sbjct:   22 DVNNAFLYGDLSEDVYMSQPEGYHSKGDIR--VCKLIKSLYGLKQAPRKWNEKLSHSLS--IFGFKQSMNDYSIFVRNHENT-IVILLVYVDDIIITGNSNAELENVKKFLKSQFFIKDLGELKYFLGIEVIKTDKGICLNQRKYCLELLHEFGMLGCKPVKTPLETNLVLK----RESDLDKSDCVVNITEFQKLIGKLIYLT-KTRPDISYAVHILSQYMHKPHKSHLKVAFRLLRYLKNCPGKGVHITKDNS------LNITAYVDADWAKCLFSRRSVTGFLVYFGNSLVSWKSKKQSTVSRSSTESEYRALGFVACEIIWILKLLFDFGINGLTPVNVFCDNESAVKLALNPVFHEKTKH 370          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A2P4Y542_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y542_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.770e-46
Identity = 122/379 (32.19%), Postives = 204/379 (53.83%), Query Frame = 1
Query:   22 DVSTAYLYGRLKEPRYMEIPLGI-----LSNID-HNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVM--ALVSEFSHEQIRPTNIPLSHST-MKEINEAKGEPLDKAHIHE--FRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNV-YEDNMSLIYILNGFGYNRRTKHMLIKLNY 1122
            DV TA+LYG+L+E  YME+P G+     L++ +     +  L +++YGL +A  VWN T DA +  + M FK   + P +Y  + E D    + L+ DD  + S   D++ +    +AEKF+IK LG ++  LG+E   D +R      Q+    ++++ F  E  +P+  PL  S  + + NE + +  DKA +    +RS +G L ++A  TRPDIA  +  LSR L  P   HW A + ++ YL  T +  I +  G +        ++ Y D DL    +D +S SG+M+ + G+ +VW S  Q T+  S+ E+E +AL+  +K + ++  +L++IG     P V Y++N   + +    GY  RTKH+ I+ ++
Sbjct:  116 DVDTAFLYGKLEEEIYMELPEGLQELLALADTEGEGDVVCCLLQSLYGLKQASRVWNETIDAHL--KTMAFKAADADPCVY-TRGEGDSECIVCLYVDDMLIASREKDIIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERKALTISQRAYTESIINRFGQENAKPSLTPLDPSVHLTKANEPQSDD-DKAKMKSKPYRSLVGSLMYLACGTRPDIAVAVAKLSRYLENPGQRHWDAGIKVVHYLLKTKDVAITYD-GCMGAE-----LTAYSD-DLTGNRDDRRSVSGVMLMVCGAPVVWRSTFQKTVILSSTEAEYMALNDCIKEVVWMRRLLEDIGAEKHGPMVIYDENQGAMALAKNVGYQARTKHIDIRYHF 483          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A2P4YFB2_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YFB2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 7.680e-46
Identity = 124/377 (32.89%), Postives = 201/377 (53.32%), Query Frame = 1
Query:    4 MKMSDFDVSTAYLYGRLKEPRYMEIPLGILSNIDHNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVMALVSEFSHEQIR--PTNIPLSHSTMKEINEAKGEPLDKAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGI--RYDKPNVYEDNMSLIYILNGFGYNRRTKHMLIKLNY 1122
            +K+   DV  AYL   L +P Y++ P G  S  D   ++L   K +YGL ++G +WN   D+ +  +   F+R    P LYY +  +D +  L L+ DD  L S +  L ++ + +L E+F IK LG +++ LG+        +  H +Q  + L+++   ++ +  PT + ++H    E     G+P     +  +R AIG L WI+  TRPDIA     LSR ++ P + HWK +  +L YLK T N+G+ +K G+   +K  L   +Y DA+ A      KSTSG ++ ING  I W S+KQ+T+A ST+E+E +A    V+    I  +L E+G+  + D   +  DN S I  +      +RT+H+ IK ++
Sbjct:  779 VKLRQGDVPNAYLKSALDKPIYLKPPAGTTSANDRRVWLLL--KGLYGLKQSGKLWNDLIDSFL--QAQGFQRSQMDPCLYYLRY-HDKLCVLGLYVDDILLVSQDSALSDHIMSKLTERFHIKDLGDARKCLGIWIDYTTDGITIHQEQTTLDLLAKMGMQECKTAPTPMEVNHHFFGE----HGDPFHDTTL--YREAIGSLLWISNCTRPDIATATNCLSRFVSCPTSVHWKGVKRILRYLKGTTNSGLFYKFGHGIASK--LQTIIYSDANWAGDSSSAKSTSGSVLQINGMTISWSSRKQTTVALSTMEAEYVAACSAVQDCIAIHQLLQELGLMQQTDAVLLRVDNQSAIKSMRNVISTQRTRHLQIKYHF 1142          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A2P4YK34_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK34_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.320e-45
Identity = 119/378 (31.48%), Postives = 203/378 (53.70%), Query Frame = 1
Query:   22 DVSTAYLYGRLKEPRYMEIPLGI-----LSNID-HNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVM--ALVSEFSHEQIRPTNIPLSHST-MKEINEAKGEPLD-KAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNV-YEDNMSLIYILNGFGYNRRTKHMLIKLNY 1122
            DV TA+LYG+L+E  YME+P G+     L++ +     +  L +++YG+ +A  VWN T DA +  + M+FK   + P +Y + +++ + I + L+ DD  + S   D++ +    +AEKF+IK LG+++  LG+E   D +R      Q+    ++++ F  E  +P+  PL     + + +E K + +  K     +RS +G L ++A   RPDIA  +  LSR L+ P   HW A + ++ YL  T    I +  G +        ++ Y DAD     +D +S SG+M+ I G+ +VW S  Q T+A S+ E+E +A    +K + ++  +L++IG     P V YEDN     +    GY  RTKH+ I+ ++
Sbjct:  403 DVDTAFLYGKLEEEIYMELPEGLQELLALADTEGEGDVVCLLPQSLYGIKQASRVWNETIDAHL--KTMRFKAADANPPVYTRGEDDRECI-VCLYVDDMLITSRERDIIASMKAGIAEKFRIKDLGLARFILGIEINCDMERKALTISQRAYTESIINRFGQENAKPSVTPLDRIVHLTKTDEPKSDDVKAKMKSKPYRSLVGSLMYLACGIRPDIAVAVAKLSRYLDNPGQRHWDAGIKVVRYLLKTKGVAITYD-GCVGAE-----LTAYSDADWTGNRDDRRSVSGVMLMICGAPVVWRSTFQKTVALSSTEAEYMAHSNCIKEVVWMRRLLEDIGAEQHGPTVIYEDNQGAKALAKNVGYQARTKHIDIRYHF 771          
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Match: A0A6V7NSD9_ANACO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NSD9_ANACO)

HSP 1 Score: 171 bits (433), Expect = 3.750e-45
Identity = 115/375 (30.67%), Postives = 204/375 (54.40%), Query Frame = 1
Query:   10 MSDFDVSTAYLYGRLKEPRYMEIPLGILSNIDHNKFILKLKKAVYGLPEAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDGKLFSSNDDLMENTLDQLAE-KFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQKVMALVSEFSHEQIRPTNIPLSHSTMKEIN--EAKGEPLDKAHIHEFRSAIGKLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGICFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLSKKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKP-NVYEDNMSLIYILNGFGYNRRTKHMLIKLNY 1122
            +   D+  A+L+G L+E  YME P G ++       + +L+K++YGL ++   W   F   + +  MK  +C     ++Y+  E + II L ++ DD    + ND    ++L  L + +F+ K LG+ K +LG+E     + +    ++ V+ L++E  +   +P + P++ +     N  E   +P       ++R  +GKLN++   TRPDIAY++ +LS+ ++ P   HW+AL  +L YLK  P  GI +K      N    NI  + DAD +    D +ST G  +F+ G+L+ W SKKQS ++RS+ ESE  A+   V  + +I  +LDE+G++  +P  ++ DN + ++I +   ++ RTKH+ I  ++
Sbjct:   85 LHQLDIKNAFLHGDLQEEVYMEQPPGFVAQ----GRVCRLRKSLYGLKQSPRAWFGRFSEVVQEFGMKKSKCDHF--VFYRHSETN-IILLVVYVDDI-FITGNDTAGISSLKLLLQTQFQTKDLGMLKYFLGIEVTRCKRGIFLSQRKYVLDLLAETGNLGAKPCSAPMAPNLQLTANADELFEDP------EKYRRLVGKLNYLT-VTRPDIAYSVSVLSQFMSSPTVTHWEALGQILCYLKGAPGRGILYK------NHGHSNIECFSDADWSGSKVDRRSTIGYCVFVGGNLVSWRSKKQSVVSRSSAESEYRAMAQSVCEVMWIQQLLDEVGLKNPQPIKLWCDNQAALHIASNPIFHERTKHIEIDCHF 438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1103.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Z784_9EUKA1.370e-5034.90Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
A0A6A3L5P5_9STRA3.040e-4932.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A178VBX6_ARATH6.630e-4930.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9ZPU5_ARATH3.780e-4731.22Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A6A3HKQ8_9STRA1.480e-4631.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000CD7E7C73.460e-4633.15uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2P4Y542_9STRA3.770e-4632.19Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A2P4YFB2_9STRA7.680e-4632.89Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A2P4YK34_9STRA1.320e-4531.48Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A6V7NSD9_ANACO3.750e-4530.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1103contigH-akashiwo_Contig1103:60499..61620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1122
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.04e-49
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size1119
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.2546225-UTR-H-akashiwo_Contig1103:60498..605011681387083.2546225-UTR-H-akashiwo_Contig1103:60498..60501Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1103 60499..60501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.272971-CDS-H-akashiwo_Contig1103:60501..616201681387083.272971-CDS-H-akashiwo_Contig1103:60501..61620Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1103 60502..61620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1103.1.1prot_H-akashiwo_Contig1103.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1103 60502..61620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1103.1.1

>prot_H-akashiwo_Contig1103.1.1 ID=prot_H-akashiwo_Contig1103.1.1|Name=mRNA_H-akashiwo_Contig1103.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=373bp
MKMSDFDVSTAYLYGRLKEPRYMEIPLGILSNIDHNKFILKLKKAVYGLP
EAGNVWNSTFDARITDEVMKFKRCISAPALYYKKKENDDIIFLTLHTDDG
KLFSSNDDLMENTLDQLAEKFKIKRLGVSKEYLGMEQIMDNQRLLWHNKQ
KVMALVSEFSHEQIRPTNIPLSHSTMKEINEAKGEPLDKAHIHEFRSAIG
KLNWIAGATRPDIAYTMQILSRGLNKPFTHHWKALVLLLGYLKVTPNAGI
CFKKGNLDFNKNLLNISMYCDADLATVHEDTKSTSGIMIFINGSLIVWLS
KKQSTIARSTVESEALALDLGVKMLEFIIGILDEIGIRYDKPNVYEDNMS
LIYILNGFGYNRRTKHMLIKLNY
back to top

mRNA from alignment at H-akashiwo_Contig1103:60499..61620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1103.1.1 ID=mRNA_H-akashiwo_Contig1103.1.1|Name=mRNA_H-akashiwo_Contig1103.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1122bp|location=Sequence derived from alignment at H-akashiwo_Contig1103:60499..61620+ (Heterosigma akashiwo CCMP452)
AATATGAAGATGTCAGATTTTGATGTGAGTACTGCATATCTATATGGTAG ACTCAAAGAACCCAGATACATGGAAATCCCTCTGGGCATCTTATCTAACA TTGATCATAATAAGTTCATTCTCAAACTAAAAAAGGCAGTTTATGGACTA CCAGAAGCTGGAAATGTTTGGAATTCAACATTTGATGCTAGGATTACTGA TGAGGTGATGAAATTCAAGAGATGCATCAGTGCACCAGCATTATACTACA AGAAGAAAGAAAATGATGACATTATATTCCTTACCTTGCATACTGATGAT GGTAAACTATTCTCATCAAATGATGATTTGATGGAAAACACACTTGATCA ACTTGCTGAAAAATTCAAGATCAAGAGATTGGGAGTAAGCAAGGAATATT TGGGAATGGAGCAAATTATGGACAACCAACGGCTACTATGGCATAATAAA CAGAAGGTTATGGCTCTGGTTTCTGAATTTAGCCATGAACAGATACGTCC AACAAATATTCCATTGTCACATTCAACTATGAAAGAGATTAATGAAGCAA AGGGTGAACCTTTGGATAAAGCTCATATCCATGAATTCAGATCTGCTATT GGAAAGCTAAATTGGATTGCAGGAGCAACAAGACCAGACATTGCATATAC TATGCAAATCTTGAGTAGAGGTTTAAACAAACCATTTACCCACCACTGGA AGGCATTAGTTCTTCTACTTGGATACCTGAAGGTAACTCCAAATGCTGGA ATCTGTTTCAAAAAGGGAAACTTAGATTTCAATAAAAATCTACTCAATAT CTCAATGTATTGTGATGCAGACCTTGCAACAGTACATGAAGATACCAAGT CTACATCAGGGATTATGATTTTTATCAATGGATCACTGATTGTTTGGCTA TCAAAGAAACAGTCTACAATTGCAAGAAGCACTGTCGAATCAGAAGCATT GGCACTGGACCTTGGTGTCAAAATGCTAGAATTCATAATTGGAATCCTTG ATGAGATTGGAATAAGATATGACAAACCAAATGTCTATGAAGACAATATG TCACTTATCTATATTCTGAATGGTTTTGGCTATAACAGAAGAACCAAACA TATGCTGATCAAATTGAACTAC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1103:60499..61620+

>mRNA_H-akashiwo_Contig1103.1.1 ID=mRNA_H-akashiwo_Contig1103.1.1|Name=mRNA_H-akashiwo_Contig1103.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1119bp|location=Sequence derived from alignment at H-akashiwo_Contig1103:60499..61620+ (Heterosigma akashiwo CCMP452)
ATGAAGATGTCAGATTTTGATGTGAGTACTGCATATCTATATGGTAGACT
CAAAGAACCCAGATACATGGAAATCCCTCTGGGCATCTTATCTAACATTG
ATCATAATAAGTTCATTCTCAAACTAAAAAAGGCAGTTTATGGACTACCA
GAAGCTGGAAATGTTTGGAATTCAACATTTGATGCTAGGATTACTGATGA
GGTGATGAAATTCAAGAGATGCATCAGTGCACCAGCATTATACTACAAGA
AGAAAGAAAATGATGACATTATATTCCTTACCTTGCATACTGATGATGGT
AAACTATTCTCATCAAATGATGATTTGATGGAAAACACACTTGATCAACT
TGCTGAAAAATTCAAGATCAAGAGATTGGGAGTAAGCAAGGAATATTTGG
GAATGGAGCAAATTATGGACAACCAACGGCTACTATGGCATAATAAACAG
AAGGTTATGGCTCTGGTTTCTGAATTTAGCCATGAACAGATACGTCCAAC
AAATATTCCATTGTCACATTCAACTATGAAAGAGATTAATGAAGCAAAGG
GTGAACCTTTGGATAAAGCTCATATCCATGAATTCAGATCTGCTATTGGA
AAGCTAAATTGGATTGCAGGAGCAACAAGACCAGACATTGCATATACTAT
GCAAATCTTGAGTAGAGGTTTAAACAAACCATTTACCCACCACTGGAAGG
CATTAGTTCTTCTACTTGGATACCTGAAGGTAACTCCAAATGCTGGAATC
TGTTTCAAAAAGGGAAACTTAGATTTCAATAAAAATCTACTCAATATCTC
AATGTATTGTGATGCAGACCTTGCAACAGTACATGAAGATACCAAGTCTA
CATCAGGGATTATGATTTTTATCAATGGATCACTGATTGTTTGGCTATCA
AAGAAACAGTCTACAATTGCAAGAAGCACTGTCGAATCAGAAGCATTGGC
ACTGGACCTTGGTGTCAAAATGCTAGAATTCATAATTGGAATCCTTGATG
AGATTGGAATAAGATATGACAAACCAAATGTCTATGAAGACAATATGTCA
CTTATCTATATTCTGAATGGTTTTGGCTATAACAGAAGAACCAAACATAT
GCTGATCAAATTGAACTAC
back to top