mRNA_H-akashiwo_Contig1102.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1102.8.1
Unique NamemRNA_H-akashiwo_Contig1102.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A7S3Y8S1_HETAK (Hypothetical protein (Fragment) n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8S1_HETAK)

HSP 1 Score: 215 bits (547), Expect = 5.620e-68
Identity = 104/124 (83.87%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRGS 372
            LRADF+A GVWE QRV FFDNRILDADAPS F+RN SYVTAMR AVQEKK +Y ERCE++AGSFTPLVCTVDGVFHREFVAFMKRVAAALA KW K Y  VMCW R+RLQFALIRAVDLRLRGS
Sbjct:  104 LRADFLAIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAALAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGS 227          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A6V1VIF5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VIF5_HETAK)

HSP 1 Score: 181 bits (459), Expect = 4.840e-57
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 1
Query:  106 MSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRGS 372
            MSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYG VMCW RVRLQFALIRAVDLRLRGS
Sbjct:    1 MSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGS 89          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A7S3XPJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPJ1_HETAK)

HSP 1 Score: 166 bits (420), Expect = 1.060e-50
Identity = 81/93 (87.10%), Postives = 86/93 (92.47%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEK 279
            LRADFMA GVWE QRV FFDNRILDADAPS FNRNMSYVTAMRTAVQEKKKKY ERCE++AGSFTPLVCT+D VFH+EFVAFMKR+AAALA K
Sbjct:   45 LRADFMAIGVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYLERCEEMAGSFTPLVCTLDRVFHQEFVAFMKRMAAALAGK 137          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A0K8SWD2_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SWD2_LYGHE)

HSP 1 Score: 139 bits (349), Expect = 4.130e-38
Identity = 67/124 (54.03%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRGS 372
            L AD  A GVWE  R  +FD RI++ADAPS+  R   + T    A +EK  KY    EDL GSFTPL+ + DGV HREF  F KR+AA L EKW KP+  V+ W RV+LQ A+IRAV LR+RG+
Sbjct:  144 LVADIKAEGVWESGRAAYFDTRIINADAPSY--RGQEWSTISNNAAREKHNKYNRAAEDLRGSFTPLIISCDGVMHREFGVFSKRIAAVLNEKWSKPFSQVVSWVRVKLQMAVIRAVSLRIRGA 265          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A0K8TIN7_LYGHE (Uncharacterized protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TIN7_LYGHE)

HSP 1 Score: 134 bits (336), Expect = 3.070e-37
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRG 369
            L AD    GVW+ +R  FFDNR+++ADA S+ +R+  + T  + A   K  KY   CEDL GSFTPLV + DG  HRE+  F+KR+A  L+EKW KPY  V  W RV+ QF++IRAV LRLRG
Sbjct:   49 LVADLKVQGVWDGERPAFFDNRVVNADAASYVSRD--WPTISQQAANTKHAKYDRACEDLRGSFTPLVVSCDGALHREYETFLKRLANTLSEKWSKPYSQVALWVRVKTQFSVIRAVSLRLRG 169          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A0K8SF40_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SF40_LYGHE)

HSP 1 Score: 130 bits (326), Expect = 3.350e-36
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRGS 372
            L AD   +GV E  R  F DNRI++ADA S+ ++  S +   +TA  EK  KY    EDL GSFTPLVC+ DG   +EF +F+KR A  LA+KW+K Y  VM W RV++QFA+IRAV LRLRG+
Sbjct:   11 LVADIKVNGVGESGRPAFLDNRIVNADATSYLSQTWSQIA--KTAAHEKHSKYDRAAEDLRGSFTPLVCSCDGALGQEFHSFLKRAAHTLADKWNKSYSQVMGWVRVKVQFAVIRAVSLRLRGA 132          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A6H5HCT1_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HCT1_9HEMI)

HSP 1 Score: 140 bits (353), Expect = 3.500e-36
Identity = 68/124 (54.84%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRGS 372
            L  D    GVWE  R  FFDNRI++ADA S+ +R  S +   + A QEK  KY + CEDL GSFTPLVC+ DGV HREF   +KR A  LAEKW +PY  V+ W RVR++ A+I+AV LRLRG+
Sbjct:  899 LVGDIRIEGVWESGRPAFFDNRIVNADAASYTSREWSQIA--QQAAQEKHHKYDQACEDLRGSFTPLVCSCDGVLHREFHTLLKRTADRLAEKWKRPYTQVLGWVRVRIEIAIIKAVSLRLRGA 1020          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A0K8SIS0_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SIS0_LYGHE)

HSP 1 Score: 132 bits (333), Expect = 2.090e-35
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRGS 372
            L AD   HGVW+ +RV FFD+RI++ADAPS+  R  ++ +  R+A +EK  KY    ED  GSFTPLVC+ DGV H E+  F+KR+A  L+EKW+K    V  W RV+ Q ++IRAV LRLRGS
Sbjct:  177 LVADIGIHGVWDGERVAFFDHRIINADAPSY--RTQTWESLSRSAAREKHLKYNRAAEDRRGSFTPLVCSCDGVLHIEYETFLKRMANTLSEKWNKSLSWVTSWVRVKTQMSVIRAVSLRLRGS 298          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A8D8Y6R6_9HEMI (Hypothetical protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8Y6R6_9HEMI)

HSP 1 Score: 127 bits (320), Expect = 1.320e-34
Identity = 59/124 (47.58%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWARVRLQFALIRAVDLRLRGS 372
            L AD   +G WE  R  FFDNR+++ADAPS+ ++  S+ T   T  +EK  KY    ED+ GSF+PLVC+ DG  H EF  F+KR+A  L+E+W KP+G ++ + ++++QF++IRAV LRLRG+
Sbjct:   73 LIADIQINGFWEAGRAAFFDNRVVNADAPSYLSQ--SWSTLSNTHAREKHLKYDRAIEDIRGSFSPLVCSCDGALHVEFEQFVKRMALRLSERWSKPFGRIVEFVKLKVQFSIIRAVSLRLRGT 194          
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Match: A0A7S3XPK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPK9_HETAK)

HSP 1 Score: 124 bits (310), Expect = 3.180e-34
Identity = 59/63 (93.65%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 LRADFMAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGS 189
            LRADFMAH VWE QRV FFDNRILDADAPS FNRNMSYVTAMRTAVQEKKKKYQERCEDLAGS
Sbjct:   56 LRADFMAHSVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGS 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1102.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8S1_HETAK5.620e-6883.87Hypothetical protein (Fragment) n=4 Tax=Heterosigm... [more]
A0A6V1VIF5_HETAK4.840e-5797.75Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XPJ1_HETAK1.060e-5087.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0K8SWD2_LYGHE4.130e-3854.03Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A0K8TIN7_LYGHE3.070e-3752.03Uncharacterized protein n=1 Tax=Lygus hesperus Tax... [more]
A0A0K8SF40_LYGHE3.350e-3652.42Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A6H5HCT1_9HEMI3.500e-3654.84Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
A0A0K8SIS0_LYGHE2.090e-3552.42Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A8D8Y6R6_9HEMI1.320e-3447.58Hypothetical protein n=1 Tax=Cacopsylla melanoneur... [more]
A0A7S3XPK9_HETAK3.180e-3493.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1102contigH-akashiwo_Contig1102:187342..187713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15705610
PFAMsRVT_1
Model size372
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-30
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.0133128-CDS-H-akashiwo_Contig1102:187341..1876981681387083.0133128-CDS-H-akashiwo_Contig1102:187341..187698Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1102 187342..187698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387083.0225735-UTR-H-akashiwo_Contig1102:187698..1877131681387083.0225735-UTR-H-akashiwo_Contig1102:187698..187713Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1102 187699..187713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1102.8.1prot_H-akashiwo_Contig1102.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1102 187342..187698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1102.8.1

>prot_H-akashiwo_Contig1102.8.1 ID=prot_H-akashiwo_Contig1102.8.1|Name=mRNA_H-akashiwo_Contig1102.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=119bp
MAHGVWEMQRVPFFDNRILDADAPSHFNRNMSYVTAMRTAVQEKKKKYQE
RCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGSVMCWA
RVRLQFALIRAVDLRLRGS
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mRNA from alignment at H-akashiwo_Contig1102:187342..187713-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1102.8.1 ID=mRNA_H-akashiwo_Contig1102.8.1|Name=mRNA_H-akashiwo_Contig1102.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=372bp|location=Sequence derived from alignment at H-akashiwo_Contig1102:187342..187713- (Heterosigma akashiwo CCMP452)
CTTCGGGCGGACTTCATGGCTCATGGTGTGTGGGAGATGCAGAGGGTGCC GTTTTTTGACAACCGCATTTTAGATGCTGACGCACCTTCTCATTTCAACC GCAACATGAGCTATGTGACTGCCATGCGCACCGCAGTACAGGAGAAGAAG AAGAAATACCAGGAGCGCTGCGAGGACCTGGCTGGGAGCTTCACACCTTT AGTGTGCACGGTGGATGGGGTCTTTCACAGGGAGTTTGTCGCTTTCATGA AGAGGGTGGCGGCTGCGCTTGCAGAGAAATGGCATAAGCCCTATGGGTCG GTGATGTGCTGGGCAAGGGTACGGCTGCAGTTTGCATTGATCCGGGCTGT GGACCTGAGACTACGTGGGTCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1102:187342..187713-

>mRNA_H-akashiwo_Contig1102.8.1 ID=mRNA_H-akashiwo_Contig1102.8.1|Name=mRNA_H-akashiwo_Contig1102.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=357bp|location=Sequence derived from alignment at H-akashiwo_Contig1102:187342..187713- (Heterosigma akashiwo CCMP452)
ATGGCTCATGGTGTGTGGGAGATGCAGAGGGTGCCGTTTTTTGACAACCG
CATTTTAGATGCTGACGCACCTTCTCATTTCAACCGCAACATGAGCTATG
TGACTGCCATGCGCACCGCAGTACAGGAGAAGAAGAAGAAATACCAGGAG
CGCTGCGAGGACCTGGCTGGGAGCTTCACACCTTTAGTGTGCACGGTGGA
TGGGGTCTTTCACAGGGAGTTTGTCGCTTTCATGAAGAGGGTGGCGGCTG
CGCTTGCAGAGAAATGGCATAAGCCCTATGGGTCGGTGATGTGCTGGGCA
AGGGTACGGCTGCAGTTTGCATTGATCCGGGCTGTGGACCTGAGACTACG
TGGGTCG
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