mRNA_H-akashiwo_Contig1101.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1101.4.1
Unique NamemRNA_H-akashiwo_Contig1101.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A6V1TCR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TCR2_HETAK)

HSP 1 Score: 137 bits (346), Expect = 3.360e-38
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 1
Query:   70 NEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
             EVLEKPVQTPC+HLFCEDEL +WL R+ETCP D+  +   E CKASRIITNMLGELERYC FKDKGC W  PS+RLK+H
Sbjct:   35 QEVLEKPVQTPCEHLFCEDELLEWLLRKETCPVDQTIINPDEICKASRIITNMLGELERYCKFKDKGCEWAGPSDRLKNH 114          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A6A4WAL1_AMPAM (E3 ubiquitin-protein ligase NRDP1 n=5 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4WAL1_AMPAM)

HSP 1 Score: 97.4 bits (241), Expect = 2.340e-23
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            MG + A F   + I   L+C IC  VLEKPV+TPC+H FCE  +  WL  R  CP D   + T + C+ SR++TN LG LE  C F+ +GC+   P E L +H
Sbjct:    1 MGYETARFTSAN-IDKDLMCPICMCVLEKPVETPCEHSFCEACILQWLQTRRRCPLDNTVVGTNQLCEPSRLLTNQLGRLEIACDFRAEGCTERVPLEYLAAH 102          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: UPI001F10AFF6 (E3 ubiquitin-protein ligase NRDP1-like n=1 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F10AFF6)

HSP 1 Score: 94.0 bits (232), Expect = 8.230e-22
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            MG D   F     IS +L+C IC  VLE P+ T CDHLFC + ++DWL    TCP D  PL+T    +A R I N++  L+ YC ++D GC  T   E+   H
Sbjct:    1 MGFDTDRF-EDSEISEELICSICTGVLEDPLTTHCDHLFCNECINDWLRHHHTCPIDRCPLRTCMLKRAPRAIRNLINRLKIYCPYRDDGCEQTIRLEQYDQH 102          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A8J2S367_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S367_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.690e-20
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            MG D  +FV    IS  LLC IC+ VLE+PVQT C+HLFCED L  WL R+ TCP  +   +     +A R I  ++ +LE  C   D  C WT   ++L +H
Sbjct:    1 MGRDAELFVDAAAISRHLLCSICHGVLERPVQTACEHLFCEDCLLAWLCRKATCPVCQAVTEPEAVKRAPRAIVGLIDDLEVRCDHCD--CDWTGALDKLNAH 101          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A8J5AEB5_9DIPT (RING-type domain-containing protein n=2 Tax=Bradysia odoriphaga TaxID=1564500 RepID=A0A8J5AEB5_9DIPT)

HSP 1 Score: 93.2 bits (230), Expect = 1.870e-20
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            MG D+  FV    I  +L+C IC  VL+ P +TPC+H FC   +  WL+  ETCP D  P++T +  + SR++ N+L +L+  C F D GCS     E L SH
Sbjct:    1 MGYDVERFVG-GAIERELICQICASVLQDPWETPCEHFFCMTCMQSWLAVSETCPIDRQPIRTADLKQPSRLLRNLLAQLDIKCDFVDNGCSNIVKLENLASH 102          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A6P6Y331_DERPT (E3 ubiquitin-protein ligase NRDP1-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6Y331_DERPT)

HSP 1 Score: 89.4 bits (220), Expect = 5.460e-20
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            MG D   F     IS +L+C IC  VLE P+ T CDHLFC D ++DWL    TCP D  PL++    +A R I N++  L+ YC ++  GC  T   E+ + H
Sbjct:    1 MGFDTDRF-EDCEISEELICSICTGVLEDPLTTHCDHLFCNDCINDWLRDHHTCPIDRCPLRSCMLKRAPRAIRNLINRLKIYCPYRMDGCKQTFCLEQFEQH 102          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A7R9LJK4_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9LJK4_9ACAR)

HSP 1 Score: 87.8 bits (216), Expect = 1.590e-19
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            MG D + F   D IS +LLC IC+EVLE+ + T C+HLFC   +++WLS   TCP D   +       A R++ N+LG+L+  C F   GC      E L+ H
Sbjct:    1 MGYDCSRFT--DEISEELLCSICSEVLEEALTTDCEHLFCRQCITEWLSVNRTCPIDRLYITARNLKAAPRVVRNLLGKLDIRCDFAPDGCQTVVALEALEKH 101          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A482RQA3_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQA3_9ARCH)

HSP 1 Score: 82.0 bits (201), Expect = 1.340e-18
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPL 183
            MG DL  FVHP+RIS QL+C IC +VL +PV T  +HLFCE+EL +WL+R   CP  + P+
Sbjct:    1 MGRDLEDFVHPERISSQLICPICTQVLHRPVMTMSEHLFCEEELLEWLTRSSLCPVTKQPI 61          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A7R9LIR8_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9LIR8_9ACAR)

HSP 1 Score: 85.1 bits (209), Expect = 2.190e-18
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            MG D   F   + IS +LLC IC+EVLE+ + T C+HLFC   +++WLS   TCP D   + +     A R++ N+LG+LE  C F   GC      E L  H
Sbjct:    1 MGYDCQRFT--EDISEELLCSICSEVLEEALTTDCEHLFCRQCITEWLSVNRTCPIDRLYITSRNLKAAPRVVRNLLGKLEIRCDFATDGCQTIVALEALDKH 101          
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Match: A0A7S0N1N9_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1N9_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 2.390e-18
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    7 VDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSRRETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERLKSH 309
            ++ ++F+    I P L C I   V+E PV+TPCDHLFC   ++ WLS  +TCP+   PL TG+  K  R I +++ +LE  C  ++ GC+W    E L  H
Sbjct:    4 LEQSLFLRSSEIHPTLYCGINMGVMENPVRTPCDHLFCSHCITQWLSYNQTCPSCREPLATGDL-KRDRNIESIINDLEVLCGAEEVGCNWAGRLEELPKH 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1101.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1TCR2_HETAK3.360e-3873.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A4WAL1_AMPAM2.340e-2344.66E3 ubiquitin-protein ligase NRDP1 n=5 Tax=Amphibal... [more]
UPI001F10AFF68.230e-2242.72E3 ubiquitin-protein ligase NRDP1-like n=1 Tax=Der... [more]
A0A8J2S367_9STRA1.690e-2043.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J5AEB5_9DIPT1.870e-2041.75RING-type domain-containing protein n=2 Tax=Bradys... [more]
A0A6P6Y331_DERPT5.460e-2041.75E3 ubiquitin-protein ligase NRDP1-like n=1 Tax=Der... [more]
A0A7R9LJK4_9ACAR1.590e-1940.78Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
A0A482RQA3_9ARCH1.340e-1855.74Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7R9LIR8_9ACAR2.190e-1840.78Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A7S0N1N9_9CHLO2.390e-1839.60Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1101contigH-akashiwo_Contig1101:215119..215427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8049.ENSGMOP00000015854
Preferred nameRNF151
PFAMszf-C3HC4_2,zf-TRAF
Model size309
Max annot lvl33208|Metazoa
KEGG koko:K11981
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.3e-18
EggNOG OGsKOG0297@1|root,KOG0297@2759|Eukaryota,38EVH@33154|Opisthokonta,3BGSU@33208|Metazoa,3CX5J@33213|Bilateria,48CED@7711|Chordata,496RI@7742|Vertebrata,4A0I1@7898|Actinopterygii
EC2.3.2.27
DescriptionRing finger protein
Cds size309
COG categoryO
BRITEko00000,ko00001,ko01000,ko03029,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.8490815-CDS-H-akashiwo_Contig1101:215118..2154271681387082.8490815-CDS-H-akashiwo_Contig1101:215118..215427Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1101 215119..215427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1101.4.1prot_H-akashiwo_Contig1101.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1101 215119..215427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1101.4.1

>prot_H-akashiwo_Contig1101.4.1 ID=prot_H-akashiwo_Contig1101.4.1|Name=mRNA_H-akashiwo_Contig1101.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
MGVDLAVFVHPDRISPQLLCMICNEVLEKPVQTPCDHLFCEDELSDWLSR
RETCPADENPLKTGETCKASRIITNMLGELERYCSFKDKGCSWTSPSERL
KSH
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mRNA from alignment at H-akashiwo_Contig1101:215119..215427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1101.4.1 ID=mRNA_H-akashiwo_Contig1101.4.1|Name=mRNA_H-akashiwo_Contig1101.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig1101:215119..215427+ (Heterosigma akashiwo CCMP452)
ATGGGGGTTGATTTGGCGGTTTTCGTTCATCCAGATCGGATATCTCCCCA GCTTCTTTGCATGATATGCAATGAAGTGCTTGAAAAGCCCGTCCAAACTC CTTGCGATCATCTGTTCTGTGAAGATGAGCTATCAGATTGGCTTTCGAGG AGGGAAACCTGCCCTGCAGACGAGAATCCCCTAAAAACAGGCGAAACCTG CAAGGCCAGTAGAATAATCACAAACATGCTGGGCGAGCTCGAAAGGTACT GCAGCTTTAAGGATAAAGGATGTTCTTGGACTAGCCCTTCCGAAAGATTG AAGAGCCAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1101:215119..215427+

>mRNA_H-akashiwo_Contig1101.4.1 ID=mRNA_H-akashiwo_Contig1101.4.1|Name=mRNA_H-akashiwo_Contig1101.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig1101:215119..215427+ (Heterosigma akashiwo CCMP452)
ATGGGGGTTGATTTGGCGGTTTTCGTTCATCCAGATCGGATATCTCCCCA
GCTTCTTTGCATGATATGCAATGAAGTGCTTGAAAAGCCCGTCCAAACTC
CTTGCGATCATCTGTTCTGTGAAGATGAGCTATCAGATTGGCTTTCGAGG
AGGGAAACCTGCCCTGCAGACGAGAATCCCCTAAAAACAGGCGAAACCTG
CAAGGCCAGTAGAATAATCACAAACATGCTGGGCGAGCTCGAAAGGTACT
GCAGCTTTAAGGATAAAGGATGTTCTTGGACTAGCCCTTCCGAAAGATTG
AAGAGCCAT
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