mRNA_H-akashiwo_Contig1100.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1100.8.1
Unique NamemRNA_H-akashiwo_Contig1100.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A836C875_9STRA (Dihydroflavonol-4-reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C875_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.120e-28
Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = -3
Query:    1 QMSAIAEGDLVTIFGATGGVGYLVANKLVDSG-YKVRALVRDVPKAKAMFGDRP----VEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 420
            Q  A+A+GD++ + GATGGVG  V  +L  +G YKVRA+VR   +A   F D P    +E VE +     G+  A+EGA A+VCCTGTTAFP+  W GGNTP  VD  A++ +        GA  LKRF  L+S+GV R   +PF
Sbjct:    9 QSRAVAKGDVIAVCGATGGVGAGVVKRLAATGDYKVRAIVRSTARAATRFADVPNSDALELVEADIRDPQGIAAALEGAHAVVCCTGTTAFPSKAWQGGNTPFEVDYVALKNVLTGATGQRGAR-LKRFVHLSSIGVTRRASLPF 152          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: B7GAK9_PHATC (Nucleoside-diphosphate-sugar epimerases-like protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAK9_PHATC)

HSP 1 Score: 115 bits (289), Expect = 1.040e-27
Identity = 77/187 (41.18%), Postives = 102/187 (54.55%), Query Frame = -3
Query:    1 SLLVVCIIALGRAFSLHELHRLSVSNRLSAQPANRPCSTTVQ----MSAIAEGDLVTIFGATGGVGYLVANKLVDSGYKVRALVRDVPKAKAMFGDRPVEFVEGNFVSG--AGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 543
            SL V  I  LG A    E+   S + +L    + R  +  V+     +A+  GD V + G TGGVG LV  KL  + Y VR   RD  +A A+  +  V  V  + +S   A +D A++G AA+V   GTTAFPT KW GGNTP  +D+ AV  +A         P LK+  LLTSVGV+RTG+MPF
Sbjct:    4 SLAVTLISVLGLAAGFLEVAAFSRTTQLVRCESPRSVADAVRNTRLCAALQSGDGVLVIGGTGGVGQLVTQKLAAAAYDVRVASRDPARAAAVLANDNVRVVSLDLLSATPADLDAALQGTAAVVISVGTTAFPTMKWRGGNTPQAIDQEAVTNIAQSART---VPGLKKVVLLTSVGVDRTGEMPF 187          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: D7FMQ6_ECTSI (Dihydroflavonol-4-reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ6_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.280e-26
Identity = 76/182 (41.76%), Postives = 103/182 (56.59%), Query Frame = -3
Query:    1 GRAFSLHELHRLSVSNRLSAQPANRPCSTTVQMSA-----IAEGDLVTIFGATGGVGYLVANKLVDSG-YKVRALVRDVPKAKAMF-----GDRPVEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 513
            GR    H   + S + R  A       ++   MSA     I+EGD V + GA+GG+G LV   L  +G YKV+ LVR++ KAK        G   +E  +G+ +  + +  A++GAA +V CTGTTAFP+ +W GGNTP  VD  AV  +  R AA GG+  LKRF LL+SVGV R  + PF
Sbjct:   33 GREALSHTPAKCSSAGRTRAGAKLGAAASRASMSAAAGGEISEGDTVVVVGASGGIGRLVTQSLASTGKYKVKGLVRNLEKAKEALLSSAGGGLEIELEQGDILDESSLVAAMKGAACVVACTGTTAFPSKRWNGGNTPDAVDNLAVGNML-RAAAGGGS--LKRFVLLSSVGVTRADKFPF 211          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A2V0PLX6_9CHLO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PLX6_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 1.850e-26
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = -3
Query:    1 RPCSTTVQMSAIAEGDLVTIFGATGGVGYLVANKLVDSGYKVRALVRDVPKAKAMFGDRP-VEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 441
            R  +  V+   +  GD V + GATGGVG +V  KL++ GYKVRAL R   +A+ +FGD P +   EG+    A +  A+ G  A+ CCTGTTAFP+ +W GGN P   D      L A  AAP     LKRF  +TS GVER G+ P+
Sbjct:   32 RTRTVRVRAGVVVPGDTVLVAGATGGVGQIVTAKLLERGYKVRALTRRAGRARELFGDHPNLTPAEGDCRDPASLAAAVAGVDAVCCCTGTTAFPSKRWQGGNGPRETDLEGTGNLIA--AAPRS---LKRFVFVTSAGVEREGEFPW 174          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A1Z5KP62_FISSO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP62_FISSO)

HSP 1 Score: 108 bits (270), Expect = 6.280e-25
Identity = 76/191 (39.79%), Postives = 104/191 (54.45%), Query Frame = -3
Query:    1 VVCIIALGRAFSLHEL-------HRLSVSNRLSAQPANRPCSTTVQM---SAIAEGDLVTIFGATGGVGYLVANKLVDSGYKVRALVRDVPKA---KAMFGDRPVEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 534
            ++ +  LG   S+H           +S S   S+  ++ P +  V +   SAI EGD V + G +GGVG LV+ KL  +GY VR   R+ P             ++ V+G   S   + +AI+GAAA+V   GTTAFPT KW GGNTP  +D  AV RLA   +A     +LKR  L+TS+GV+RT QMPF
Sbjct:    6 IISLFFLGTFSSIHAFVVGIMTKSPISSSFSSSSSSSHFPRTNAVPLLFLSAIGEGDTVVVVGGSGGVGQLVSRKLAQAGYFVRVTSRNNPSTTDTNPNLTSTKLDLVKG---SDQELQQAIQGAAALVISVGTTAFPTLKWKGGNTPQAIDDIAVTRLAYAASA---LQSLKRIVLVTSIGVDRTDQMPF 190          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A2P6VPY4_9CHLO (Nucleoside diphosphate sugar epimerase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VPY4_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 1.310e-24
Identity = 61/142 (42.96%), Postives = 79/142 (55.63%), Query Frame = -3
Query:    1 VQMSAIAEGDLVTIFGATGGVGYLVANKLVDSGYKVRALVRDVPKAKAMFGDRP-VEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 423
            V  + +  G  V + GATGGVG L+  KL++ GYKVRAL R   K +  FG    +     +    + +  A+ G  A+ CCTGTTAFP+ +W GGN P   D  +V  L   C      P+LKRF L TS GVER+GQ PF
Sbjct:   34 VAAAVVEPGSTVLVAGATGGVGQLLTAKLLERGYKVRALSRSAEKVQQQFGGAEGLTTAIADLRDPSSLGAALGGVDAVCCCTGTTAFPSKRWDGGNNPEQTDYVSVSNLIKACP-----PSLKRFTLTTSAGVERSGQFPF 170          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A0G4EQC9_VITBC (NAD(P)-bd_dom domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EQC9_VITBC)

HSP 1 Score: 107 bits (266), Expect = 1.320e-24
Identity = 63/146 (43.15%), Postives = 86/146 (58.90%), Query Frame = -3
Query:    1 MSAIAEGDLVTIFGATGGVGYLVANKLVDSG-YKVRALVRDVPKAKAMFGD------RPVEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 417
            M+A+++GD + + GATGGVG LV  +L   G +KVRAL R   +A    G       + VE   G+    + +  A+  A+A+V CTGTTAFPT KW GGNTP  +D+     +  +    GG   LK+FAL TS+GV R GQ+PF
Sbjct:    1 MAALSDGDTIVVAGATGGVGQLVTQRLAQLGRFKVRALSRSPERASGPGGPLEALAAQGVEVARGDVRDPSSLPSALADASAVVVCTGTTAFPTGKWKGGNTPKAIDEEGTRAVVEQLRKQGG---LKKFALPTSIGVRRPGQLPF 143          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A2P6TFQ0_CHLSO (Nucleoside diphosphate sugar epimerase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TFQ0_CHLSO)

HSP 1 Score: 106 bits (265), Expect = 2.700e-24
Identity = 61/126 (48.41%), Postives = 75/126 (59.52%), Query Frame = -3
Query:    1 ATGGVGYLVANKLVDSGYKVRALVRDVPKAKAMFGDRP-VEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 375
            ATGGVG LVA KL+D GYKVRAL R   K + +FG    +     +    + +  A+EG  A+VC TGTTAFP+ +W GGN P   D  +V  L   C      P+LKRF L TS GVER+GQ PF
Sbjct:   51 ATGGVGQLVAAKLLDRGYKVRALSRSSDKVQQLFGGAEGLSAAIADLREPSSLPAALEGVDAVVCATGTTAFPSKRWDGGNNPEQTDYVSVRNLVRACP-----PSLKRFVLTTSAGVERSGQFPF 171          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A7S4LC74_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LC74_9EUGL)

HSP 1 Score: 106 bits (264), Expect = 2.790e-23
Identity = 67/158 (42.41%), Postives = 89/158 (56.33%), Query Frame = -3
Query:    1 LSAQPANRPCSTT--VQMSAIAEGDLVTIFGATGGVGYLVANKL-VDSGYKVRALVRDVPKAKAMFGDRPVEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAP-ALKRFALLTSVGVERTGQMPF 462
            L A    R  ST    + + +A GD V I+GA+GG+G L+  KL +   Y VRA+VRD+ + + +F    +E VEG       V R I GAAA++  TGTTAFPT KW  G+TP  +D   V  +          P  LKRF L+TS+G+ER  QMPF
Sbjct:  179 LEAPTQYRMVSTAGHARATPLAAGDTVVIYGASGGLGQLLVQKLALQKKYNVRAVVRDLERGRDLFKGYDIELVEGATTDPPSVTRTIAGAAAVIVTTGTTAFPTMKWFQGSTPAAIDYEGVANVV------NSTPDTLKRFILVTSIGMERKDQMPF 330          
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Match: A0A5J4YG96_9CHLO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YG96_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 3.760e-23
Identity = 58/134 (43.28%), Postives = 81/134 (60.45%), Query Frame = -3
Query:    1 GDLVTIFGATGGVGYLVANKLVDSGYKVRALVRDVPKAKAMFGD-RPVEFVEGNFVSGAGVDRAIEGAAAIVCCTGTTAFPTAKWAGGNTPVNVDKAAVERLAARCAAPGGAPALKRFALLTSVGVERTGQMPF 399
            G+   + GATGGVG ++  KL+D G+KV+AL R+  KA ++FG  + +E V+G+   G  + +   G   +VC  GTTAFP+A+W GGN P   D  A   L    A P G   +KRF L+TS GVER  ++PF
Sbjct:   14 GNCALVVGATGGVGQVLTGKLLDRGFKVKALSRNPEKASSLFGSAQNLELVQGDCRGGGELQKIFAGVDVVVCVLGTTAFPSARWKGGNGPEQTDSIATGNLIK--ATPKG---IKRFVLVTSAGVERYNKLPF 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1100.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C875_9STRA4.120e-2846.21Dihydroflavonol-4-reductase n=1 Tax=Tribonema minu... [more]
B7GAK9_PHATC1.040e-2741.18Nucleoside-diphosphate-sugar epimerases-like prote... [more]
D7FMQ6_ECTSI1.280e-2641.76Dihydroflavonol-4-reductase n=2 Tax=Ectocarpus Tax... [more]
A0A2V0PLX6_9CHLO1.850e-2644.59NAD(P)-bd_dom domain-containing protein n=1 Tax=Ra... [more]
A0A1Z5KP62_FISSO6.280e-2539.79NAD(P)-bd_dom domain-containing protein n=1 Tax=Fi... [more]
A0A2P6VPY4_9CHLO1.310e-2442.96Nucleoside diphosphate sugar epimerase n=1 Tax=Mic... [more]
A0A0G4EQC9_VITBC1.320e-2443.15NAD(P)-bd_dom domain-containing protein n=2 Tax=Vi... [more]
A0A2P6TFQ0_CHLSO2.700e-2448.41Nucleoside diphosphate sugar epimerase n=1 Tax=Chl... [more]
A0A7S4LC74_9EUGL2.790e-2342.41Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A5J4YG96_9CHLO3.760e-2343.28NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1100contigH-akashiwo_Contig1100:231825..232456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size634
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.6565635-CDS-H-akashiwo_Contig1100:231824..2323011681387082.6565635-CDS-H-akashiwo_Contig1100:231824..232301Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1100 231825..232301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.6652582-UTR-H-akashiwo_Contig1100:232301..2324561681387082.6652582-UTR-H-akashiwo_Contig1100:232301..232456Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1100 232302..232456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1100.8.1prot_H-akashiwo_Contig1100.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1100 231825..232301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1100.8.1

>prot_H-akashiwo_Contig1100.8.1 ID=prot_H-akashiwo_Contig1100.8.1|Name=mRNA_H-akashiwo_Contig1100.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=159bp
EGHLPRALHAHGGQQREPLEGRGAAGGRAPGRQPLHGRLVHVHGRVAPRP
LGRGEGGGARAAHDRRRALDRPVDPGPAHEVALHELDGPVPEHGLRLGHI
AHQGPHLVPGVDELVGNQVANPSGRPEDGYEVALGDGAHLNGSGARTVRW
LGRQSVRH*
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mRNA from alignment at H-akashiwo_Contig1100:231825..232456+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1100.8.1 ID=mRNA_H-akashiwo_Contig1100.8.1|Name=mRNA_H-akashiwo_Contig1100.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=632bp|location=Sequence derived from alignment at H-akashiwo_Contig1100:231825..232456+ (Heterosigma akashiwo CCMP452)
GAAGGGCATCTGCCCCGTGCGCTCCACGCCCACGGAGGTCAGCAGCGCGA ACCGCTTGAGGGCCGGGGCGCCGCCGGGGGCCGCGCACCGGGCCGCCAGC CGCTCCACGGCCGCCTTGTCCACGTTCACGGGCGTGTTGCCCCCCGCCCA CTTGGCCGTGGGGAAGGCGGTGGTGCCCGTGCAGCACACGATCGCCGCCG CGCCCTCGATCGCCCGGTCGACCCCGGCCCCGCTCACGAAGTTGCCCTCC ACGAACTCGACGGGCCGGTCCCCGAACATGGCCTTCGCCTTGGGCACATC GCGCACCAAGGCCCGCACCTTGTACCCGGAGTCGACGAGCTTGTTGGCAA CCAGGTAGCCAACCCCTCCGGTCGCCCCGAAGATGGTTACGAGGTCGCCC TCGGCGATGGCGCTCATCTGAACGGTAGTGGAGCACGGACGGTTCGCTGG CTGGGCCGACAGTCTGTTCGACACTGACAACCTATGGAGCTCGTGGAGCG AGAAGGCACGCCCAAGTGCGATGATGCACACCACGAGTAAGCTGGCAGCG TGGAAAGAGCGTCTGTTCATCGTCATTCGTCGGTGGGGCCCTCTTCCAAA TCCCAAAAAATAAATTAAAAATTGAAGAGTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1100:231825..232456+

>mRNA_H-akashiwo_Contig1100.8.1 ID=mRNA_H-akashiwo_Contig1100.8.1|Name=mRNA_H-akashiwo_Contig1100.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig1100:231825..232456+ (Heterosigma akashiwo CCMP452)
GAAGGGCATCTGCCCCGTGCGCTCCACGCCCACGGAGGTCAGCAGCGCGA
ACCGCTTGAGGGCCGGGGCGCCGCCGGGGGCCGCGCACCGGGCCGCCAGC
CGCTCCACGGCCGCCTTGTCCACGTTCACGGGCGTGTTGCCCCCCGCCCA
CTTGGCCGTGGGGAAGGCGGTGGTGCCCGTGCAGCACACGATCGCCGCCG
CGCCCTCGATCGCCCGGTCGACCCCGGCCCCGCTCACGAAGTTGCCCTCC
ACGAACTCGACGGGCCGGTCCCCGAACATGGCCTTCGCCTTGGGCACATC
GCGCACCAAGGCCCGCACCTTGTACCCGGAGTCGACGAGCTTGTTGGCAA
CCAGGTAGCCAACCCCTCCGGTCGCCCCGAAGATGGTTACGAGGTCGCCC
TCGGCGATGGCGCTCATCTGAACGGTAGTGGAGCACGGACGGTTCGCTGG
CTGGGCCGACAGTCTGTTCGACACTGA
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