mRNA_H-akashiwo_Contig110.31.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.31.1
Unique NamemRNA_H-akashiwo_Contig110.31.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A7S4DAL4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAL4_HETAK)

HSP 1 Score: 149 bits (377), Expect = 1.560e-43
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKKAAAP 237
            MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKKAAAP
Sbjct:    1 MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKKAAAP 79          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A7S2XWE5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.620e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKK 225
            MTY+DMI  A++ALKDRTGSSPQAIKAYILAN  DVKF QHALR ALKKGVESGKL KVK SFKLS  EK   KK
Sbjct:    1 MTYFDMIKAALLALKDRTGSSPQAIKAYILANNKDVKFLQHALRAALKKGVESGKLVKVKGSFKLSADEKKPKKK 75          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A6V1U1F7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U1F7_HETAK)

HSP 1 Score: 105 bits (261), Expect = 1.870e-25
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKKAAAP 237
            +TYYDM  +AI+ALKDRTGSSPQAIK YI + Y  + F QH+LRLALKKGVE+GKL KVKAS+K+S  EK A+KKA+ P
Sbjct:   42 LTYYDMAKEAILALKDRTGSSPQAIKKYIESTYKKITFQQHSLRLALKKGVEAGKLIKVKASYKISAGEKLAVKKASKP 120          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A835Z9C5_9STRA (H15 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 6.650e-25
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    4 TYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKKAAAP 237
            TYY+MI  AI+ALKDR+GSSP AIK YI AN  D+ FAQH+LR+ALKKGVESGKL K+KAS+KL+ +EK  +KKA+ P
Sbjct:    3 TYYEMIKDAIMALKDRSGSSPAAIKKYIEANNKDLNFAQHSLRMALKKGVESGKLIKIKASYKLADSEKKPVKKASPP 80          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A7S3Y4H7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4H7_HETAK)

HSP 1 Score: 100 bits (250), Expect = 2.040e-24
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKK 225
            +TYYDM  +AI+ALKDRTGSSPQAIK YI + Y  + F QH+LRLALKKGVE+GKL KVKAS+K+S  EK A+KK
Sbjct:   42 LTYYDMAKEAILALKDRTGSSPQAIKKYIESTYKKITFQQHSLRLALKKGVEAGKLIKVKASYKISAGEKLAVKK 116          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A7S2Y1F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.980e-22
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    4 TYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEK 210
            +YYDM   AI+ALKDRTGSS  AIKAYI ANYP VKF  HALR ALKK VE+GKL KVKAS+KLS  EK
Sbjct:    3 SYYDMAKAAILALKDRTGSSLPAIKAYITANYPSVKFLPHALRAALKKAVEAGKLIKVKASYKLSADEK 71          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A7S2SPL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPL4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.560e-21
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 TYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKK 225
            TY +M   A++ALKDR+GSS  AIK YI ANYP VKFAQH+LR ALKKGVESG LEK+KAS+KL+   K   KK
Sbjct:   20 TYLEMTKAALLALKDRSGSSNSAIKKYIEANYPGVKFAQHSLRAALKKGVESGMLEKIKASYKLTEKAKTVPKK 93          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A836CPT8_9STRA (H15 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.980e-20
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    4 TYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKKAAAP 237
            TYY+MI  AI+ALK+R GSSP A+K YI AN  D+ FAQH+LR AL+KGVESGKL KVKAS+KL+  EK   K  AAP
Sbjct:    3 TYYEMIKDAIMALKERNGSSPAALKKYIEANNTDISFAQHSLRAALQKGVESGKLVKVKASYKLAEGEKK--KPKAAP 78          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: A0A835YX75_9STRA (Linker histone H1 and H5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX75_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.450e-18
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    4 TYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEKDAIKKAAAP 237
            TYY+M   AI  LK+R GSSP AIK Y+ AN   + FA H LR ALKKGVESGKL KVKAS+KL+ AEK A+ K A P
Sbjct:    7 TYYEMAADAIAKLKERNGSSPAAIKKYLEANNK-ITFAPHLLRQALKKGVESGKLVKVKASYKLAEAEKKAVMKKAKP 83          
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.090e-13
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    4 TYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKGVESGKLEKVKASFKLSTAEK 210
            TY  M+  AI  LK+R GSS QAIK  I A YP + F  H +R ALKKGVESGK  K+KAS+KLS   K
Sbjct:    7 TYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAK 75          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAL4_HETAK1.560e-43100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XWE5_9STRA2.620e-2778.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1U1F7_HETAK1.870e-2568.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z9C5_9STRA6.650e-2567.95H15 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3Y4H7_HETAK2.040e-2469.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y1F8_9STRA6.980e-2273.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SPL4_9STRA5.560e-2166.22Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CPT8_9STRA1.980e-2065.38H15 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YX75_9STRA3.450e-1862.82Linker histone H1 and H5 family-domain-containing ... [more]
D8LQ80_ECTSI2.090e-1357.97Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:1307557..1308012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G189
Preferred nameH1
PFAMsLinker_histone
Model size458
Max annot lvl2759|Eukaryota
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Exons1
Evalue6.58e-14
EggNOG OGs2CYYI@1|root,2S79K@2759|Eukaryota
DescriptionDomain in histone families 1 and 5
Cds size456
COG categoryB
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.0223486-CDS-H-akashiwo_Contig110:1307556..13080121681387082.0223486-CDS-H-akashiwo_Contig110:1307556..1308012Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 1307557..1308012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.31.1prot_H-akashiwo_Contig110.31.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 1307557..1308012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.31.1

>prot_H-akashiwo_Contig110.31.1 ID=prot_H-akashiwo_Contig110.31.1|Name=mRNA_H-akashiwo_Contig110.31.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=152bp
MTYYDMIVKAIVALKDRTGSSPQAIKAYILANYPDVKFAQHALRLALKKG
VESGKLEKVKASFKLSTAEKDAIKKAAAPKKKAAPRRKLPPRRRRLPPRR
RLPPRRRLPPRRRPLPRRRLLPRRRLPPRRRLPPRRLRPLRRLPRRPRPL
RR
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mRNA from alignment at H-akashiwo_Contig110:1307557..1308012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.31.1 ID=mRNA_H-akashiwo_Contig110.31.1|Name=mRNA_H-akashiwo_Contig110.31.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1307557..1308012- (Heterosigma akashiwo CCMP452)
ATGACTTACTACGACATGATCGTGAAGGCCATCGTGGCCCTCAAGGACAG AACCGGGTCCTCACCTCAGGCCATCAAGGCTTACATCCTGGCCAACTACC CTGATGTCAAGTTCGCCCAGCACGCTCTCAGACTTGCACTTAAGAAGGGC GTGGAGTCTGGCAAGCTCGAGAAGGTGAAGGCCTCCTTCAAGCTCTCTAC TGCTGAGAAGGACGCTATCAAGAAGGCCGCTGCCCCCAAGAAGAAGGCTG CCCCAAGAAGAAAGCTGCCCCCAAGAAGAAGAAGGCTGCCCCCAAGAAGA AGGCTGCCCCCAAGAAGAAGGCTGCCCCCAAGAAGAAGGCCGCTCCCAAG AAGAAGGCTGCTCCCAAGAAGAAGGCTGCCCCCAAGAAGAAGGCTGCCCC CAAGAAGGCTAAGACCCCTAAGAAGGCTGCCAAGAAGGCCAAGACCCCTA AGAAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:1307557..1308012-

>mRNA_H-akashiwo_Contig110.31.1 ID=mRNA_H-akashiwo_Contig110.31.1|Name=mRNA_H-akashiwo_Contig110.31.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1307557..1308012- (Heterosigma akashiwo CCMP452)
ATGACTTACTACGACATGATCGTGAAGGCCATCGTGGCCCTCAAGGACAG
AACCGGGTCCTCACCTCAGGCCATCAAGGCTTACATCCTGGCCAACTACC
CTGATGTCAAGTTCGCCCAGCACGCTCTCAGACTTGCACTTAAGAAGGGC
GTGGAGTCTGGCAAGCTCGAGAAGGTGAAGGCCTCCTTCAAGCTCTCTAC
TGCTGAGAAGGACGCTATCAAGAAGGCCGCTGCCCCCAAGAAGAAGGCTG
CCCCAAGAAGAAAGCTGCCCCCAAGAAGAAGAAGGCTGCCCCCAAGAAGA
AGGCTGCCCCCAAGAAGAAGGCTGCCCCCAAGAAGAAGGCCGCTCCCAAG
AAGAAGGCTGCTCCCAAGAAGAAGGCTGCCCCCAAGAAGAAGGCTGCCCC
CAAGAAGGCTAAGACCCCTAAGAAGGCTGCCAAGAAGGCCAAGACCCCTA
AGAAGG
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