mRNA_H-akashiwo_Contig11.67.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.67.1
Unique NamemRNA_H-akashiwo_Contig11.67.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: A0A7S4DGY0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGY0_HETAK)

HSP 1 Score: 168 bits (425), Expect = 6.790e-49
Identity = 78/100 (78.00%), Postives = 90/100 (90.00%), Query Frame = 2
Query:    5 DGVSKMQKLVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNKVETCPVRNFTLKFAKQARKW 304
            D   ++++LVR L +FDR+G+FH PVDP+GQG+P YREIIKNPMDLATI++K  NK+YKSRKEVMLDIKLIWDNSLTFNKVETCPVR FTLKFAKQARKW
Sbjct:   49 DEEGRLRELVRWLRRFDRRGLFHFPVDPDGQGVPRYREIIKNPMDLATIEEKINNKEYKSRKEVMLDIKLIWDNSLTFNKVETCPVRTFTLKFAKQARKW 148          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: A0A7S3Y388_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y388_HETAK)

HSP 1 Score: 117 bits (293), Expect = 1.390e-29
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 2
Query:  134 MDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNKVETCPVRNFTLKFAKQARKW 304
            MDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNKVETCPVRNFTLKFAKQARKW
Sbjct:    1 MDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNKVETCPVRNFTLKFAKQARKW 57          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: A0A1R2BU12_9CILI (Bromo domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BU12_9CILI)

HSP 1 Score: 82.4 bits (202), Expect = 2.440e-16
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   23 QKLVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNKVET 253
            + L++ L + D    F  PVDP+  GIP YR+IIKNPMD+ TI+ K KN KY++ ++ + DI+LIWDN  TFNK E+
Sbjct:   19 KNLIKYLIEQDESIDFLYPVDPDKLGIPSYRKIIKNPMDICTIRTKIKNSKYETIEDTLKDIQLIWDNCRTFNKEES 95          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: A0A1Y1ZN32_9PLEO (Uncharacterized protein (Fragment) n=1 Tax=Clohesyomyces aquaticus TaxID=1231657 RepID=A0A1Y1ZN32_9PLEO)

HSP 1 Score: 75.1 bits (183), Expect = 1.290e-13
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   32 VRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFN 241
            VR   K      F EPV+PE  GIPHYR+ IKNPMDL+T++ K K   Y++ ++ M D+ L+ DNS+TFN
Sbjct:  333 VRNTKKIKVAHAFKEPVNPEAMGIPHYRDFIKNPMDLSTMEAKLKEGNYENIRDFMADLDLVIDNSITFN 402          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: J9FTP1_9SPIT (Bromodomain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9FTP1_9SPIT)

HSP 1 Score: 74.3 bits (181), Expect = 2.370e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 2
Query:   23 QKLVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNKVE 250
            ++L+  + KF++  IFHEPVDPE  G+P Y  II+NPMD  TIK +     Y   +E + D++L++DN L FN  E
Sbjct:  623 KRLMNSIWKFNQSWIFHEPVDPERLGVPDYFNIIRNPMDFGTIKQRLNTNYYHRMQEFLDDMQLVFDNCLKFNGEE 698          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: F4QCV7_CAVFA (Ankyrin repeat-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QCV7_CAVFA)

HSP 1 Score: 74.3 bits (181), Expect = 2.480e-13
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 2
Query:   29 LVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFN-------KVETCPVRNFTLKFAK 289
            +  Q+ K     +FH PVDP   G+P Y +IIKNPMDL T+K K  N  YK+ KE   D++L++ N+LTFN       K+    ++NF  KF +
Sbjct:  506 IYTQIYKRKNAEVFHYPVDPVADGVPTYLDIIKNPMDLGTMKTKLDNGSYKTIKEFAADMRLMFINALTFNLDGTPIWKLAKSLLQNFNTKFGQ 599          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: A0A7S3AY73_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AY73_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 3.230e-13
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   11 VSKMQKLVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNKVET 253
            +S+++ +++ L        F +PVDPE  GIPHYR+IIK PMDL T+ ++ +  KY    E+  ++ LIW N++ FN  E+
Sbjct:   58 LSRVKAILKSLNTNQSSICFRKPVDPEAMGIPHYRDIIKRPMDLQTVGERLEQGKYTKVSELRAELDLIWSNAVIFNTEES 138          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: B8LBW9_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBW9_THAPS)

HSP 1 Score: 68.6 bits (166), Expect = 4.430e-13
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   29 LVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFN 241
            L++ L+  +   +F+ PVDP   G+P Y E+IKNPMDL T+K + +N  Y+S  EV +DI L +DN++ +N
Sbjct:    2 LLKGLSNHNHGWVFNSPVDPVELGLPDYFEVIKNPMDLGTVKKRLENGLYRSINEVEVDINLTFDNAMLYN 72          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: A0A8J9SD39_9CHLO (Probable Bromodomain-containing protein 3 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SD39_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 4.460e-13
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   17 KMQKLVRQLTKFD-RQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNK 244
            K+QK+++++ + +  +  F+EPVDP+  GIP YREII+NPMDL TI  + +N  Y S   V  D+ L+W N  TFN+
Sbjct:    8 KVQKVLKKVMQHEIAESFFNEPVDPDALGIPEYREIIRNPMDLGTIARRLENGYYSSAAAVAQDVCLVWRNCHTFNE 84          
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Match: A0A1R2CPR6_9CILI (Bromo domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CPR6_9CILI)

HSP 1 Score: 72.8 bits (177), Expect = 5.040e-13
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 2
Query:   11 VSKMQKLVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKNKKYKSRKEVMLDIKLIWDNSLTFNK 244
            + + ++L++ L   D    F  PV+PE  GIP Y+EIIKNPMD+ TI  K K  KY +   ++ DIKLIWDN  TFN+
Sbjct:   15 LDQAERLIQYLINQDECVDFLYPVNPEKLGIPLYKEIIKNPMDMNTISIKIKQSKYSNIDLILEDIKLIWDNCRTFNQ 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DGY0_HETAK6.790e-4978.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y388_HETAK1.390e-29100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1R2BU12_9CILI2.440e-1650.65Bromo domain-containing protein n=1 Tax=Stentor co... [more]
A0A1Y1ZN32_9PLEO1.290e-1350.00Uncharacterized protein (Fragment) n=1 Tax=Clohesy... [more]
J9FTP1_9SPIT2.370e-1344.74Bromodomain containing protein n=1 Tax=Oxytricha t... [more]
F4QCV7_CAVFA2.480e-1341.49Ankyrin repeat-containing protein n=1 Tax=Cavender... [more]
A0A7S3AY73_9EUKA3.230e-1339.51Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
B8LBW9_THAPS4.430e-1343.66Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A8J9SD39_9CHLO4.460e-1345.45Probable Bromodomain-containing protein 3 at N-ter... [more]
A0A1R2CPR6_9CILI5.040e-1347.44Bromo domain-containing protein n=1 Tax=Stentor co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:2926634..2928119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5059.CADAFLAP00002036
Preferred nameBDF1
PFAMsBET,Bromodomain
Model size307
Max annot lvl4751|Fungi
KEGG koko:K11684
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0001047,GO:0001067,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0001672,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010638,GO:0010639,GO:0010847,GO:0016043,GO:0016070,GO:0016073,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0031445,GO:0031452,GO:0031454,GO:0031491,GO:0031493,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0033696,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034728,GO:0042393,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045798,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0060968,GO:0065007,GO:0070013,GO:0070577,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0090054,GO:0090304,GO:0097159,GO:0097346,GO:0097659,GO:0098781,GO:0140030,GO:0140033,GO:1900049,GO:1900051,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902275,GO:1902494,GO:1903506,GO:1904949,GO:1905268,GO:1905269,GO:2000112,GO:2001141,GO:2001251,GO:2001252
Exons3
Evalue7.02e-13
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,38EH8@33154|Opisthokonta,3NVXS@4751|Fungi,3QKHB@4890|Ascomycota,20FS6@147545|Eurotiomycetes,3S53D@5042|Eurotiales
DescriptionTranscription regulator BDF1
Cds size288
COG categoryK
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387079.6101115-CDS-H-akashiwo_Contig11:2926633..29266961681387079.6101115-CDS-H-akashiwo_Contig11:2926633..2926696Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 2926634..2926696 -
1681387079.6224432-CDS-H-akashiwo_Contig11:2927597..29277331681387079.6224432-CDS-H-akashiwo_Contig11:2927597..2927733Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 2927598..2927733 -
1681387079.6326203-CDS-H-akashiwo_Contig11:2928011..29281001681387079.6326203-CDS-H-akashiwo_Contig11:2928011..2928100Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 2928012..2928100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387079.644057-UTR-H-akashiwo_Contig11:2928100..29281191681387079.644057-UTR-H-akashiwo_Contig11:2928100..2928119Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 2928101..2928119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.67.1prot_H-akashiwo_Contig11.67.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 2926634..2928100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.67.1

>prot_H-akashiwo_Contig11.67.1 ID=prot_H-akashiwo_Contig11.67.1|Name=mRNA_H-akashiwo_Contig11.67.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=96bp
MQKLVRQLTKFDRQGIFHEPVDPEGQGIPHYREIIKNPMDLATIKDKFKN
KKYKSRKEVMLDIKLIWDNSLTFNKVETCPVRNFTLKFAKQARKW*
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mRNA from alignment at H-akashiwo_Contig11:2926634..2928119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.67.1 ID=mRNA_H-akashiwo_Contig11.67.1|Name=mRNA_H-akashiwo_Contig11.67.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1486bp|location=Sequence derived from alignment at H-akashiwo_Contig11:2926634..2928119- (Heterosigma akashiwo CCMP452)
CTTTGACGGGGTGTCGAAGATGCAGAAGCTGGTGCGGCAGCTGACGAAGT TCGACCGGCAGGGCATCTTCCACGAGCCGGTGGACCCGGAGGGCCAGGGG ATCCCCCAGTGAGCGGGGAAGGGGGGGGGTCCCCTGCTCGGTGGGCAACG TCTGCTTGTCGTTGCTTGGACCGAACCACCCTCTTCGCCGGCTGCAGTGT GGACCGAAGGCAAAAACGATGCATGTCTTGGTTCACTTGAATCAAAAACG TCGTTTCGAGTTGAGTCAAATGAGTTATATGAACGCGATACCGCACATAT CAGTATACAAGACTTTTTTACTACTGTACAGCCTGGTTCTTTTTGCTCAA CTCACTGACACAACTTGTACCTTTGATGCGTGGCAGCTATAGGGAGATCA TTAAAAACCCAATGGACCTGGCGACAATCAAAGATAAATTCAAGAATAAG AAGTACAAGTCGCGAAAGGAGGTCATGTTAGACATCAAGCTCATATGGGA CAACTCGCTGACTTTTAACAAGGTGGGCGCAGCAATATATGTACATATAG ACTGATTTTACCCTCTTGCCAAGCACATGTTTCACCCCCAAACCCCACCA CGACGTCCTCCGCTATACCAGGCACAAAGTTTCCCCTGGAAACTCACCAC TAGCGTTCCTGCTGTGCTGTCATACATACCACACAAAGAAGTGAAAAGAA AGCAAAATGAAGAATACTGCAAATGACATGAGCAGAGGTAGCAAAATATA GCCTGAACTATTTTCTCCACTTTGTGCTTACACGTAGGAACAAAAAAAAA AAAAAAAAAAAAAAAGGAAGTGGCTTCTGTACTGTTATGACCCTATGACC TGCCATCTTTGGAATATATGATATCTGGCGATAGTAAGACTGCTGCTTCT GTCTATTGGACTCCTAACTATGTACTGCACTTCTTAGTGCATATGCAGAT GGTATCCACTGTGGTTGGTCATTCATTGGGTCAGCTACTGACGCCTGAAA ACAAAGATGCTATAGAGAGCTAGAATCCCGGGCAAATGGAACGATCTAAG GCACCCCGCTCCCCAACAGCAGCATGTACAAGGATACCTTCCTCTTAGAA GACAACTATACACACATGGGCGATAATGGGTATTGAAGTAGCAACGGTTA TACAACAAGCAGTTTTTGTCACTTAATGCTAAAACGTGGGGGGGGTAGTT TTAGCATGGAATTCGCCAACATAGCGCCTGGCAGTGATTGTGGCTCGGGG GATGTGATAGGGGCACATTGGAGGTTAAAATGAGGCTGATGGGAACAGGT GCGTGTTGCCTTGGAGTGGTATGCGTATACATACATACAGCAAATGTAAC GCTTTCGTGGAGCAAATAGGTATAGCCAGGGTGTTGAACAGCACGCCTTG TCATAATATTGTGTCCATTTCAGGTGGAGACATGCCCCGTTCGCAATTTC ACTTTGAAATTCGCCAAGCAGGCCCGCAAGTGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:2926634..2928119-

>mRNA_H-akashiwo_Contig11.67.1 ID=mRNA_H-akashiwo_Contig11.67.1|Name=mRNA_H-akashiwo_Contig11.67.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig11:2926634..2928119- (Heterosigma akashiwo CCMP452)
ATGCAGAAGCTGGTGCGGCAGCTGACGAAGTTCGACCGGCAGGGCATCTT
CCACGAGCCGGTGGACCCGGAGGGCCAGGGGATCCCCCACTATAGGGAGA
TCATTAAAAACCCAATGGACCTGGCGACAATCAAAGATAAATTCAAGAAT
AAGAAGTACAAGTCGCGAAAGGAGGTCATGTTAGACATCAAGCTCATATG
GGACAACTCGCTGACTTTTAACAAGGTGGAGACATGCCCCGTTCGCAATT
TCACTTTGAAATTCGCCAAGCAGGCCCGCAAGTGGTGA
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