mRNA_H-akashiwo_Contig11.49.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.49.1
Unique NamemRNA_H-akashiwo_Contig11.49.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: A0A6V1NXC2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NXC2_HETAK)

HSP 1 Score: 193 bits (491), Expect = 4.280e-60
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 2
Query:  242 MRRWPYRQIRSINGKVETLLCKVIQSQDNEEIEACKAKIELLQMKKIFVMMAATWKSNEAYKVLNLPAESLANEDSFSHMIEIALRCTIEEVNALVVKTG 541
            M RWPYRQIRSINGKVETLLCK IQSQDNEEIEACKAKIELLQMKKIFVMMAATWKSNEAYKVLNLPAESLANEDSFSHMIEIALRCTIEEVNALVVKTG
Sbjct:    1 MNRWPYRQIRSINGKVETLLCKAIQSQDNEEIEACKAKIELLQMKKIFVMMAATWKSNEAYKVLNLPAESLANEDSFSHMIEIALRCTIEEVNALVVKTG 100          
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: A0A7S3UTA5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA5_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 9.970e-7
Identity = 30/93 (32.26%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  131 HITTAKLQSLYHLPISKAAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVETLLCKVIQSQDN-EEIEACKAKIELLQMKKIFVMMAATW 406
            HI    L++ + LP+S+AA + G+S+   ++ C++  ++RWP+RQ+RS+  ++E L  K  +      +I     +IELL+ K++ V+ AA++
Sbjct:   28 HINIDLLENKFDLPLSEAASSLGLSMTKLKKICRKFNIKRWPHRQVRSLENEIEELEMKKRRPNVTCAKIAKLNRRIELLEKKRLIVVKAASF 120          
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.160e-6
Identity = 24/85 (28.24%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  149 LQSLYHLPISKAAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVETLLCKVIQSQDNEEIEACKAKIELLQMKKIFVMMAAT 403
            L+  YH+P++ AA+   +S+   ++ C+++ ++RWP+RQ+ S+N  +  L  K++ + D++   A +AK   L+ K+  ++  A+
Sbjct:   18 LEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTAS 102          
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.630e-5
Identity = 30/95 (31.58%), Postives = 52/95 (54.74%), Query Frame = 2
Query:  125 SSHITTAKLQSLYHLPISKAAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVE--TLLCKVIQSQDNEEIEACKAKIELLQMKKIFVMMAAT 403
            S  +T   L+  +  PI + +K  G+S    +R C+++ ++RWPYRQIRS+N  ++   LL +  Q  D + ++    ++  L  KK  +  AAT
Sbjct:  103 SKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQE---QLVSLHYKKQLICQAAT 194          
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: A0A0K9NYS2_ZOSMR (RWP-RK domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NYS2_ZOSMR)

HSP 1 Score: 55.8 bits (133), Expect = 1.680e-5
Identity = 27/83 (32.53%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  134 ITTAKLQSLYHLPISKAAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVETLLCKVIQSQDNEEIEACKAKIELLQMKKI 382
            +T  ++ +L+HLPI++A+    +     ++ C+RH ++RWPYR+++S + K+  L  KV+++Q   +  A  A++EL Q+K++
Sbjct:  202 LTLEEISTLFHLPIAQASINLQLCTTALKKACRRHGIKRWPYRKVKSADKKIAQLH-KVLKTQTGTD--ATLAEVELAQIKEV 281          
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: A0A7S0UET7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UET7_HEMAN)

HSP 1 Score: 52.4 bits (124), Expect = 2.260e-5
Identity = 27/82 (32.93%), Postives = 44/82 (53.66%), Query Frame = 2
Query:  134 ITTAKLQSLYHLPISKAAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVETLLCKVIQSQDNEEIEACKAKIELLQMKK 379
            I+   L+   HLP  + AK  G+ + + ++ C++H M RWPYR++RSI  K+E+L             E    +IE L+ +K
Sbjct:   12 ISADVLKQYLHLPAKEVAKRLGLCLTSLKKVCRQHGMTRWPYRKLRSIEKKLESLQSSARDKDGGTSGEDVMRQIEALRSEK 93          
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: A0A1X6PE57_PORUM (RWP-RK domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PE57_PORUM)

HSP 1 Score: 55.8 bits (133), Expect = 2.620e-5
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 2
Query:  125 SSHITTAKLQSLYHLPISKAAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVETLLCKVIQSQDNE 331
            S +++ A L S +HLPI+ AAK  G  V   ++ C+RH ++RWPYR++ SI+  +E +  +   + D E
Sbjct:   30 SKNLSIADLMSCFHLPINDAAKQLGTCVTVLKKQCRRHGVKRWPYRKLVSIDKLIEKMEKEQTTADDKE 98          
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.120e-5
Identity = 30/95 (31.58%), Postives = 51/95 (53.68%), Query Frame = 2
Query:  125 SSHITTAKLQSLYHLPISKAAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVE--TLLCKVIQSQDNEEIEACKAKIELLQMKKIFVMMAAT 403
            S  +T   L+  +  PI   +K  G+S    +R C+++ ++RWPYRQIRS+N  ++   LL +  Q  D + ++    ++  L  KK  +  AAT
Sbjct:  105 SKRVTLRDLERYFEYPIEDVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQE---QLVSLHYKKQLICQAAT 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6V1NXC2_HETAK4.280e-6098.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UTA5_HETAK9.970e-732.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z7T4_9STRA4.160e-628.24RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
D8LJT6_ECTSI1.630e-531.58Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A0K9NYS2_ZOSMR1.680e-532.53RWP-RK domain-containing protein n=1 Tax=Zostera m... [more]
A0A7S0UET7_HEMAN2.260e-532.93Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1X6PE57_PORUM2.620e-537.68RWP-RK domain-containing protein n=1 Tax=Porphyra ... [more]
A0A6H5K0H9_9PHAE3.120e-531.58RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:1799075..1799935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44689.DDB0231700
PFAMsRWP-RK
Model size730
Max annot lvl554915|Amoebozoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.3e-08
EggNOG OGs29UAD@1|root,2RXI7@2759|Eukaryota,3X9CB@554915|Amoebozoa
DescriptionRWP-RK domain
Cds size513
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387078.5562854-UTR-H-akashiwo_Contig11:1799074..17991051681387078.5562854-UTR-H-akashiwo_Contig11:1799074..1799105Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 1799075..1799105 +
1681387078.5871296-UTR-H-akashiwo_Contig11:1799749..17999351681387078.5871296-UTR-H-akashiwo_Contig11:1799749..1799935Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 1799750..1799935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387078.5677354-CDS-H-akashiwo_Contig11:1799105..17993231681387078.5677354-CDS-H-akashiwo_Contig11:1799105..1799323Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1799106..1799323 +
1681387078.57885-CDS-H-akashiwo_Contig11:1799454..17997491681387078.57885-CDS-H-akashiwo_Contig11:1799454..1799749Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 1799455..1799749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.49.1prot_H-akashiwo_Contig11.49.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 1799106..1799749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.49.1

>prot_H-akashiwo_Contig11.49.1 ID=prot_H-akashiwo_Contig11.49.1|Name=mRNA_H-akashiwo_Contig11.49.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=171bp
MHIEYLHMKSPEPSRAIESHNSSRKPDAPVGSSHITTAKLQSLYHLPISK
AAKTFGISVRTFQRHCKRHQMRRWPYRQIRSINGKVETLLCKVIQSQDNE
EIEACKAKIELLQMKKIFVMMAATWKSNEAYKVLNLPAESLANEDSFSHM
IEIALRCTIEEVNALVVKTG*
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mRNA from alignment at H-akashiwo_Contig11:1799075..1799935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.49.1 ID=mRNA_H-akashiwo_Contig11.49.1|Name=mRNA_H-akashiwo_Contig11.49.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=861bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1799075..1799935+ (Heterosigma akashiwo CCMP452)
GTGCTCTGATAGACCTGCCATTCACCCCTCGATGCATATCGAATATTTGC ACATGAAAAGTCCAGAGCCAAGTCGAGCGATCGAGAGTCACAACAGCAGC AGGAAGCCCGATGCTCCAGTGGGCTCCAGCCACATAACAACCGCCAAACT GCAAAGCCTATACCACCTTCCAATCTCAAAAGCGGCCAAAACATTTGGTA TATCTGTGAGGACATTTCAACGGCACTGCAAGCGCCATCAAATGCGACGG TAAGCAGGGGGTGATGTGGGAATTCCATGCTGGTCTAACGCATCTATACC ACCACTACTTTCACCCACACCCACTTCATCTCCTGAAACTGGCATCTTTC TCTTTCACTAATTCTCAAATGTATGAACAGATGGCCTTATCGACAAATTC GAAGCATCAACGGTAAAGTTGAAACTCTGCTATGCAAAGTGATCCAGAGT CAAGATAATGAAGAGATTGAGGCTTGTAAAGCAAAGATAGAACTCCTCCA GATGAAGAAAATATTTGTCATGATGGCCGCAACTTGGAAGTCTAATGAAG CTTACAAGGTGTTGAACTTACCAGCTGAGAGCCTTGCCAATGAGGATAGC TTCAGCCACATGATCGAGATTGCACTGCGTTGTACAATTGAAGAAGTCAA TGCACTTGTTGTGAAAACAGGCTGATGATACAACAATGCGCATGCAAGCC ACCAGCTCCTCCTTTGTTGTGAAATGCTGATTGCTCAAACTTATAAATAC ACTCTCTTCCCTTTTCCTTTTGTTGTTGATTATTCATGCTGTGGTTGTGT AGTGCCAGTCGTGCAGCACATATGTGCTGATCTTTTTCCTTCTTTTATCT TTTTTATATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:1799075..1799935+

>mRNA_H-akashiwo_Contig11.49.1 ID=mRNA_H-akashiwo_Contig11.49.1|Name=mRNA_H-akashiwo_Contig11.49.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=513bp|location=Sequence derived from alignment at H-akashiwo_Contig11:1799075..1799935+ (Heterosigma akashiwo CCMP452)
ATGCATATCGAATATTTGCACATGAAAAGTCCAGAGCCAAGTCGAGCGAT
CGAGAGTCACAACAGCAGCAGGAAGCCCGATGCTCCAGTGGGCTCCAGCC
ACATAACAACCGCCAAACTGCAAAGCCTATACCACCTTCCAATCTCAAAA
GCGGCCAAAACATTTGGTATATCTGTGAGGACATTTCAACGGCACTGCAA
GCGCCATCAAATGCGACGATGGCCTTATCGACAAATTCGAAGCATCAACG
GTAAAGTTGAAACTCTGCTATGCAAAGTGATCCAGAGTCAAGATAATGAA
GAGATTGAGGCTTGTAAAGCAAAGATAGAACTCCTCCAGATGAAGAAAAT
ATTTGTCATGATGGCCGCAACTTGGAAGTCTAATGAAGCTTACAAGGTGT
TGAACTTACCAGCTGAGAGCCTTGCCAATGAGGATAGCTTCAGCCACATG
ATCGAGATTGCACTGCGTTGTACAATTGAAGAAGTCAATGCACTTGTTGT
GAAAACAGGCTGA
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