mRNA_H-akashiwo_Contig11.27.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.27.1
Unique NamemRNA_H-akashiwo_Contig11.27.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 590 bits (1521), Expect = 5.920e-208
Identity = 278/398 (69.85%), Postives = 338/398 (84.92%), Query Frame = 1
Query:    1 TPLVSHAIQS-EGVAYTKPYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            TPL++HAIQS + VAY KPYR+ PA  +KAEE+ ++LLKQGVI ESSS FNAPIV+V KK+G+ RMCLDLR+LN IT  +KFPL T REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KT FT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDD+L +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKKQVRQ LGLA YYRQFV  F+ IA PLY+LTKD PKGV W DDCEW++Q +KD L S P+L+YPR+D PFIVETDAS  GLGA+L Q+T  G +P+AYASR+CS TEANYSATELECLGVIYA+QQFRCY++GRE+TL+TDH++L+ LK  KNP+G
Sbjct:   84 TPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTG 481          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 590 bits (1521), Expect = 3.830e-205
Identity = 278/398 (69.85%), Postives = 338/398 (84.92%), Query Frame = 1
Query:    1 TPLVSHAIQS-EGVAYTKPYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            TPL++HAIQS + VAY KPYR+ PA  +KAEE+ ++LLKQGVI ESSS FNAPIV+V KK+G+ RMCLDLR+LN IT  +KFPL T REMFD LA ++YF+S+DMLWAYWS+PLRE D+ KT FT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDD+L +S + F+ HL +L +IFKRM AANLKFKLPKC+FGA+Q+P+LGH+ +REG+KPDPKKIEAV+ +RRP SKKQVRQ LGLA YYRQFV  F+ IA PLY+LTKD PKGV W DDCEW++Q +KD L S P+L+YPR+D PFIVETDAS  GLGA+L Q+T  G +P+AYASR+CS TEANYSATELECLGVIYA+QQFRCY++GRE+TL+TDH++L+ LK  KNP+G
Sbjct:   84 TPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTG 481          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 508 bits (1307), Expect = 3.430e-178
Identity = 238/322 (73.91%), Postives = 275/322 (85.40%), Query Frame = 1
Query:  163 LVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGRE 1128
            +V+KKTG+ RMCLDLRSLN IT  AKFPL T REMFDQL G++YFSS+DMLWAYWS+PLR+ D+HKT FT+RNKKY + VMCFGLTNAPATFSHLVNKVFQG  +DFALCFLDD+L ++G +FS HL  LE+IF RMI ANLKFKLPKCLFGA+QVP+LGHI TREG+KPDPKKIEA+K ++RP +KKQVRQ LGLA YYRQFV  F+  A PLY LTK  PKGVEWTDDCEW++Q LKD L + PILI+P F+  F +ETDAS  GLGA+LSQ+T  GRKPVAYASRVC+S EANYSATELECLGVI+ +QQFRCYILGR+
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAIKKLQRPQTKKQVRQVLGLASYYRQFVPNFAATAAPLYTLTKKEPKGVEWTDDCEWAFQNLKDTLTTAPILIFPNFNKEFTIETDASKHGLGAILSQDTTEGRKPVAYASRVCNSAEANYSATELECLGVIFGIQQFRCYILGRQ 322          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A4Y2I107_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2I107_ARAVE)

HSP 1 Score: 338 bits (868), Expect = 1.460e-107
Identity = 173/380 (45.53%), Postives = 243/380 (63.95%), Query Frame = 1
Query:   52 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            P R+P A +E+A+ +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PL    +  D L GS +F+++D+   YW I +R  DR KT FT     + +KVM FGL NAP TF  L+  V +G +++  L +LDDI+   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP +   +R FLGL  YYR+FV+ FS IAKPLY+LT +      WT++CE S+ +LK  L S+PIL YPR D  FI++TDAS +G+GAVLSQ   +  + +AY S+     E NY  T  E L ++ +++ F  Y+ GR++ L TDH +L+ L   K P G
Sbjct:  106 PRRLPLARKEEADNLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPETFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLYKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQNIGNEERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEPEG 483          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A4Y2QNW9_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2QNW9_ARAVE)

HSP 1 Score: 338 bits (868), Expect = 5.920e-107
Identity = 173/380 (45.53%), Postives = 244/380 (64.21%), Query Frame = 1
Query:   52 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            P R+P A +E+A+ +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PL    +  D L GS +F+++D+   YW I +R  DR KT FT     + +KVM FGL NAPATF  L+  V +G +++  L +LDDI+   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP +   +R FLGL  YYR+FV+ FS IAKPL++LT +      WT++CE S+ +LK  L S+PIL YPR D  FI++TDAS +G+GAVLSQ   +  + +AY S+     E NY  T  E L ++ +++ F  Y+ GR++ L TDH +L+ L   K P G
Sbjct:  270 PRRLPLARKEEADNLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQNIGNEERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEPEG 647          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A4Y2HRQ6_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HRQ6_ARAVE)

HSP 1 Score: 335 bits (859), Expect = 7.740e-107
Identity = 170/380 (44.74%), Postives = 242/380 (63.68%), Query Frame = 1
Query:   52 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            P R+P A +E+AE +V+E+++ G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PL    +  D L GS +F+++D+   YW + +R  DR KT FT  +  + + VM FGL NAPATF  L+  V +G +++  L +LDDI+   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG+K DP+KI+AV    RP     +R FLGL  YYR FV+ FS IA+PL++LT +      WTD+CE S+ +LK  L S PI+ YPR D  FI++TDAS +G+GAVLSQ   +  + +AY S+     E NY  T  E L ++ +++ F  Y+ GR++ L TDH +L+ L   K P G
Sbjct:  139 PRRLPLARKEEAERLVNEMVENGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDSLNGSQWFTTLDLKSGYWQVEIRPEDREKTAFTTGHGLWQFNVMPFGLCNAPATFERLMETVLRGLSSEACLIYLDDIII-VGQTFEEHLNNLRKVFQRIQKANLKLNPKKCRFFQKEVAYLGHVISEEGVKTDPEKIKAVVDWPRPDKIHDIRSFLGLCTYYRLFVKNFSTIARPLHKLT-EAKSNFNWTDECEKSFNSLKQALTSAPIMTYPRIDKDFILDTDASNEGIGAVLSQNIGNEERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEPEG 516          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A4Y2GE17_ARAVE (RNA-directed DNA polymerase (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GE17_ARAVE)

HSP 1 Score: 337 bits (863), Expect = 2.610e-106
Identity = 173/380 (45.53%), Postives = 242/380 (63.68%), Query Frame = 1
Query:   52 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            P R+P A +E+AE +V E++  G+IEESS  + +PIVLV+ K G  R C+D R LN+ITKK  +PL    +  D L GS +F+++D+   YW + +R  DR KT FT     + +KVM FGL NAPATF  L+  V +G +++  L +LDDI+   G+ F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG+K DP KI+AV    RP     +R FLGL  YYR+FV+ FS IA+PL++LT +T     WTD+CE S+ +LK  L S+PIL YPR D  FI++TDAS +G+GAVLSQ T +  + +AY S+     E NY  T  E L ++ +++ F  Y+ GR++ L TDH +L+ L   K P G
Sbjct:  101 PRRLPLARKEEAEHLVKEMVDNGIIEESSGPWASPIVLVKNKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQVEVRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLSPKKCRFFQKEVTYLGHVISAEGVKTDPGKIKAVVDWPRPDKIHDLRSFLGLCTYYRRFVKNFSTIARPLHKLT-ETKSNFNWTDECEKSFNSLKQALTSSPILTYPRTDKEFILDTDASNEGIGAVLSQNTGNEERVIAYFSKSLGKPEKNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEPEG 478          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A4Y2J5Z8_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2J5Z8_ARAVE)

HSP 1 Score: 326 bits (836), Expect = 6.080e-105
Identity = 168/372 (45.16%), Postives = 238/372 (63.98%), Query Frame = 1
Query:   52 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHL 1167
            P R+P A +E+A+ +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PL    +  D L GS +F+++++   YW I +R  DR KT FT     + +KVM FGL NAPATF  L+  V +G +++  L +LDDI+    + F  HL NL K+F+R+  ANLK    KC F   +V +LGH+I+ EG+K D +KI+AV    RP     +R FLGL  YYR+FV+ FS IA+PL++LTK       WTD+CE S+ +LK  L S+PIL YPR D  FI++TDAS +G+GAVLSQ T +  + +AY S+     E NY  T  E L ++ +++ F  Y+ GR++ L TDH +L+ L
Sbjct:   18 PRRLPLARREEADNLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLELKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIIIVE-RTFEEHLNNLRKVFQRLQKANLKLNPKKCRFFQREVAYLGHVISAEGVKTDSEKIKAVVDWPRPDKIHDLRSFLGLCTYYRRFVKNFSTIARPLHKLTK-AKSNFNWTDECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQNTGNEERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWL 387          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A4Y2NDX6_ARAVE (RNA-directed DNA polymerase (Fragment) n=7 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NDX6_ARAVE)

HSP 1 Score: 338 bits (868), Expect = 6.610e-105
Identity = 173/380 (45.53%), Postives = 244/380 (64.21%), Query Frame = 1
Query:   52 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            P R+P A +E+A+ +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PL    +  D L GS +F+++D+   YW I +R  DR KT FT     + +KVM FGL NAPATF  L+  V +G +++  L +LDDI+   G+ F  HL NL K+F+R+  ANLK  L KC F   +V +LGH+I+ EG+K DP+KI+AV    RP +   +R FLGL  YYR+FV+ FS IAKPL++LT +      WT++CE S+ +LK  L S+PIL YPR D  FI++TDAS +G+GAVLSQ   +  + +AY S+     E NY  T  E L ++ +++ F  Y+ GR++ L TDH +L+ L   K P G
Sbjct:  267 PRRLPLARKEEADNLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQIEIRPEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEACLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNLKKCRFFQKEVTYLGHVISAEGVKTDPEKIKAVVDWPRPETVHDLRSFLGLCTYYRRFVKNFSTIAKPLHKLT-EAKSNFNWTEECEKSFNSLKQALTSSPILTYPRTDKDFILDTDASNEGIGAVLSQNIGNEERVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFKEPEG 644          
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Match: A0A4Y2IAR6_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2IAR6_ARAVE)

HSP 1 Score: 323 bits (828), Expect = 2.180e-104
Identity = 165/380 (43.42%), Postives = 240/380 (63.16%), Query Frame = 1
Query:   52 PYRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFSSMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGLAPYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTPILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEANYSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSG 1191
            P R+P A +E+AE +V E++  G+IEESS  + +PIVLV+KK G  R C+D R LN+IT K  +PL    +  D L GS +FS++D+   YW + ++  D+ KT FT     + +KVM FGL NAPATF  L+  V +G  ++  L +LDDI+   G+ F  HL N+ K+F+R+  ANLK    KC F   +V +LGHII+ +G+K DP+K +AV    RP S   +R FLGL  YYR+FV  FS IA+PL++LT +      WT++CE S+ +LK  L+++P+L YPR D  FI++TDAS +G+GAVLSQ+  +    +AY S+     E NY  T  E L ++ +++ F  Y+ GR++ L TDH +L+ L   + P G
Sbjct:   18 PRRLPLAKKEEAERLVKEMVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITIKDSYPLPRIDDTLDALNGSQWFSTLDLKSGYWQVEIQPEDKEKTAFTTGQGLWEFKVMPFGLCNAPATFERLMETVLRGLTSEACLVYLDDIII-VGRTFQEHLNNIRKVFQRLQKANLKLSPKKCRFFRKEVSYLGHIISADGVKTDPEKTKAVVDWPRPESIHDLRSFLGLCTYYRRFVRNFSAIARPLHKLT-EARSNFNWTEECEKSFNSLKQALITSPVLTYPRTDKEFILDTDASNEGIGAVLSQKIGNEECVIAYFSKSLGKPERNYCVTRKELLAIVKSIEHFHHYLYGRKFLLRTDHASLRWLLNFREPEG 395          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK5.920e-20869.85Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK3.830e-20569.85Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK3.430e-17873.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4Y2I107_ARAVE1.460e-10745.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2QNW9_ARAVE5.920e-10745.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2HRQ6_ARAVE7.740e-10744.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2GE17_ARAVE2.610e-10645.53RNA-directed DNA polymerase (Fragment) n=1 Tax=Ara... [more]
A0A4Y2J5Z8_ARAVE6.080e-10545.16Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2NDX6_ARAVE6.610e-10545.53RNA-directed DNA polymerase (Fragment) n=7 Tax=Ara... [more]
A0A4Y2IAR6_ARAVE2.180e-10443.42Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:811104..812315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog936053.I1CPR9
PFAMsAsp_protease_2,RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC
Model size1212
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.43e-97
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,1GWQ7@112252|Fungi incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size1212
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.8771114-CDS-H-akashiwo_Contig11:811103..8123151681387077.8771114-CDS-H-akashiwo_Contig11:811103..812315Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 811104..812315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.27.1prot_H-akashiwo_Contig11.27.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 811104..812315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.27.1

>prot_H-akashiwo_Contig11.27.1 ID=prot_H-akashiwo_Contig11.27.1|Name=mRNA_H-akashiwo_Contig11.27.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=404bp
TPLVSHAIQSEGVAYTKPYRIPPAHQEKAEEMVDELLKQGVIEESSSEFN
APIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLSTTREMFDQLAGSWYFS
SMDMLWAYWSIPLRETDRHKTVFTLRNKKYCWKVMCFGLTNAPATFSHLV
NKVFQGYNNDFALCFLDDILAHSGKEFSTHLLNLEKIFKRMIAANLKFKL
PKCLFGASQVPWLGHIITREGIKPDPKKIEAVKGMRRPASKKQVRQFLGL
APYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDDCEWSWQTLKDKLVSTP
ILIYPRFDSPFIVETDASGQGLGAVLSQETDHGRKPVAYASRVCSSTEAN
YSATELECLGVIYAVQQFRCYILGREWTLITDHQALQHLKMTKNPSGDGP
DGL*
back to top

mRNA from alignment at H-akashiwo_Contig11:811104..812315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.27.1 ID=mRNA_H-akashiwo_Contig11.27.1|Name=mRNA_H-akashiwo_Contig11.27.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1212bp|location=Sequence derived from alignment at H-akashiwo_Contig11:811104..812315+ (Heterosigma akashiwo CCMP452)
ACACCGTTGGTAAGTCATGCAATTCAGAGTGAGGGAGTAGCATACACCAA ACCATACCGTATACCTCCAGCTCACCAAGAAAAGGCGGAAGAGATGGTAG ATGAACTGCTCAAACAAGGGGTCATTGAAGAATCATCAAGTGAGTTCAAT GCACCAATAGTGCTAGTCCAAAAGAAGACAGGGGACTTGAGAATGTGTTT AGACCTACGTTCTCTAAACCAGATTACAAAGAAGGCAAAGTTTCCCTTGT CTACAACAAGAGAAATGTTTGATCAACTAGCAGGCAGTTGGTATTTCTCA AGCATGGATATGTTATGGGCATATTGGAGTATACCACTCAGAGAGACAGA CAGGCACAAAACAGTATTCACACTAAGAAACAAGAAATATTGCTGGAAAG TGATGTGTTTTGGACTTACAAATGCACCAGCAACATTTTCACATCTGGTG AACAAAGTCTTCCAAGGATACAACAACGACTTTGCATTATGTTTCCTAGA TGACATACTAGCTCACTCAGGAAAGGAATTCAGTACACACTTACTGAACT TGGAAAAGATTTTCAAGAGGATGATAGCAGCCAACCTAAAGTTCAAGTTG CCGAAATGCTTGTTTGGAGCTTCACAAGTACCATGGCTGGGACATATCAT CACAAGAGAAGGGATAAAACCTGACCCCAAGAAGATAGAAGCAGTGAAAG GAATGAGAAGACCTGCATCGAAAAAACAAGTCAGGCAATTTCTAGGGCTG GCACCCTACTACAGACAGTTCGTAGAGGGATTTTCAGAAATTGCTAAACC ACTATACCAATTGACGAAGGATACACCAAAAGGGGTGGAATGGACCGATG ACTGTGAATGGTCATGGCAGACACTAAAGGACAAATTAGTGTCAACACCA ATACTGATATACCCAAGGTTCGACAGTCCCTTCATAGTGGAAACGGATGC ATCAGGGCAAGGATTGGGAGCTGTATTATCACAGGAAACAGATCATGGAA GGAAACCAGTAGCATATGCCAGCAGAGTATGTAGTTCTACTGAAGCCAAT TACAGTGCTACAGAGCTGGAATGCCTGGGAGTGATATATGCAGTGCAGCA ATTTAGATGTTACATTCTAGGAAGAGAATGGACATTGATTACGGATCACC AAGCTCTCCAACACCTCAAGATGACaAAAAACCCATCAGGAGACGGGCCA GATGGATTATGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig11:811104..812315+

>mRNA_H-akashiwo_Contig11.27.1 ID=mRNA_H-akashiwo_Contig11.27.1|Name=mRNA_H-akashiwo_Contig11.27.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1212bp|location=Sequence derived from alignment at H-akashiwo_Contig11:811104..812315+ (Heterosigma akashiwo CCMP452)
ACACCGTTGGTAAGTCATGCAATTCAGAGTGAGGGAGTAGCATACACCAA
ACCATACCGTATACCTCCAGCTCACCAAGAAAAGGCGGAAGAGATGGTAG
ATGAACTGCTCAAACAAGGGGTCATTGAAGAATCATCAAGTGAGTTCAAT
GCACCAATAGTGCTAGTCCAAAAGAAGACAGGGGACTTGAGAATGTGTTT
AGACCTACGTTCTCTAAACCAGATTACAAAGAAGGCAAAGTTTCCCTTGT
CTACAACAAGAGAAATGTTTGATCAACTAGCAGGCAGTTGGTATTTCTCA
AGCATGGATATGTTATGGGCATATTGGAGTATACCACTCAGAGAGACAGA
CAGGCACAAAACAGTATTCACACTAAGAAACAAGAAATATTGCTGGAAAG
TGATGTGTTTTGGACTTACAAATGCACCAGCAACATTTTCACATCTGGTG
AACAAAGTCTTCCAAGGATACAACAACGACTTTGCATTATGTTTCCTAGA
TGACATACTAGCTCACTCAGGAAAGGAATTCAGTACACACTTACTGAACT
TGGAAAAGATTTTCAAGAGGATGATAGCAGCCAACCTAAAGTTCAAGTTG
CCGAAATGCTTGTTTGGAGCTTCACAAGTACCATGGCTGGGACATATCAT
CACAAGAGAAGGGATAAAACCTGACCCCAAGAAGATAGAAGCAGTGAAAG
GAATGAGAAGACCTGCATCGAAAAAACAAGTCAGGCAATTTCTAGGGCTG
GCACCCTACTACAGACAGTTCGTAGAGGGATTTTCAGAAATTGCTAAACC
ACTATACCAATTGACGAAGGATACACCAAAAGGGGTGGAATGGACCGATG
ACTGTGAATGGTCATGGCAGACACTAAAGGACAAATTAGTGTCAACACCA
ATACTGATATACCCAAGGTTCGACAGTCCCTTCATAGTGGAAACGGATGC
ATCAGGGCAAGGATTGGGAGCTGTATTATCACAGGAAACAGATCATGGAA
GGAAACCAGTAGCATATGCCAGCAGAGTATGTAGTTCTACTGAAGCCAAT
TACAGTGCTACAGAGCTGGAATGCCTGGGAGTGATATATGCAGTGCAGCA
ATTTAGATGTTACATTCTAGGAAGAGAATGGACATTGATTACGGATCACC
AAGCTCTCCAACACCTCAAGATGACaAAAAACCCATCAGGAGACGGGCCA
GATGGATTATGA
back to top