mRNA_H-akashiwo_Contig11.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.15.1
Unique NamemRNA_H-akashiwo_Contig11.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig11.15.1 vs. uniprot
Match: A0A7S4DEH3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEH3_HETAK)

HSP 1 Score: 209 bits (531), Expect = 1.380e-60
Identity = 102/107 (95.33%), Postives = 102/107 (95.33%), Query Frame = -1 
Query:    1 ELSLASGGRALRWRDLARAQEVRPGALVALRHNRAAGPGTSESFYLADWPAPMPDGGGHMQRILGEVRPWHRHLFLTVEVDPSGATLLRRPEAAGGEGAAFLTRTAD 321
            EL    GG ALRWRDLARAQEVRPGALVALRHNRAAGPGTSESFYLADWPAPMPDGGGHMQRILGEVRPWHRHLFLTVEVDPSGATLLRRPEAAGGEGAAFLTRTAD
Sbjct:  802 ELFAGLGGAALRWRDLARAQEVRPGALVALRHNRAAGPGTSESFYLADWPAPMPDGGGHMQRILGEVRPWHRHLFLTVEVDPSGATLLRRPEAAGGEGAAFLTRTAD 908
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DEH3_HETAK1.380e-6095.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:532116..532449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.1076949-CDS-H-akashiwo_Contig11:532115..5324481681387077.1076949-CDS-H-akashiwo_Contig11:532115..532448Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 532116..532448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.15.1prot_H-akashiwo_Contig11.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 532116..532448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.15.1

>prot_H-akashiwo_Contig11.15.1 ID=prot_H-akashiwo_Contig11.15.1|Name=mRNA_H-akashiwo_Contig11.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=111bp
VGSSGEERCPLPPRCLWPAEQRRARRIHLHGQKQVAVPRADLPQDPLHVA
SPVGHGRGPVRQVEALARPRPRGAIVPQGHQRAGPHLLRTGQVPPPQRPP
ARGQRKLGDRA
back to top

mRNA from alignment at H-akashiwo_Contig11:532116..532449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.15.1 ID=mRNA_H-akashiwo_Contig11.15.1|Name=mRNA_H-akashiwo_Contig11.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=334bp|location=Sequence derived from alignment at H-akashiwo_Contig11:532116..532449+ (Heterosigma akashiwo CCMP452)
GTCGGCAGTTCGGGTGAGGAACGCTGCCCCCTCCCCCCCCGCTGCCTCTG
GCCGGCGGAGCAGCGTCGCGCCCGAAGGATCCACCTCCACGGTCAGAAAC
AGGTGGCGGTGCCAAGGGCGGACCTCCCCCAGGATCCGCTGCATGTGGCC
TCCCCCGTCGGGCATGGGCGCGGGCCAGTCCGCCAGGTAGAAGCTCTCGC
TCGTCCCCGGCCCCGCGGCGCGATTGTGCCGCAGGGCCACCAGCGCGCCG
GGCCTCACCTCCTGCGCACGGGCCAGGTCCCGCCACCGCAGCGCCCGCCC
GCCCGAGGCCAGCGAAAGCTCGGCGATCGCGCAC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig11:532116..532449+

>mRNA_H-akashiwo_Contig11.15.1 ID=mRNA_H-akashiwo_Contig11.15.1|Name=mRNA_H-akashiwo_Contig11.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig11:532116..532449+ (Heterosigma akashiwo CCMP452)
GTCGGCAGTTCGGGTGAGGAACGCTGCCCCCTCCCCCCCCGCTGCCTCTG
GCCGGCGGAGCAGCGTCGCGCCCGAAGGATCCACCTCCACGGTCAGAAAC
AGGTGGCGGTGCCAAGGGCGGACCTCCCCCAGGATCCGCTGCATGTGGCC
TCCCCCGTCGGGCATGGGCGCGGGCCAGTCCGCCAGGTAGAAGCTCTCGC
TCGTCCCCGGCCCCGCGGCGCGATTGTGCCGCAGGGCCACCAGCGCGCCG
GGCCTCACCTCCTGCGCACGGGCCAGGTCCCGCCACCGCAGCGCCCGCCC
GCCCGAGGCCAGCGAAAGCTCGGCGATCGCGCA
back to top