mRNA_H-akashiwo_Contig1093.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1093.5.1
Unique NamemRNA_H-akashiwo_Contig1093.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A6T5NAE1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NAE1_HETAK)

HSP 1 Score: 526 bits (1356), Expect = 6.340e-188
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 3
Query:   87 MLSVIIRSVMILLLAALGKASALNVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGADVSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRRS 926
            MLSVIIRSVMILLLAALGKASALNVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGADVSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRRS
Sbjct:    1 MLSVIIRSVMILLLAALGKASALNVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGADVSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRRS 280          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A1Z5KSI1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSI1_FISSO)

HSP 1 Score: 335 bits (859), Expect = 2.770e-112
Identity = 170/257 (66.15%), Postives = 196/257 (76.26%), Query Frame = 3
Query:  156 NVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGADVSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRRS 926
            NVI VGGSSGM           GG VLLVSRS++KLE AR +L         SIA +D++DE  V+ F  TL       WD LV++AAG+APH PV TL T+  R ++++K+W AYHCAKH  P L + GA+   AGILNRRPG+NCAPLAMANGALEGLTRTLALEW P+LRVNCLSPGFCDTERFDHM   RK  M+ +TA+SLPLQKVGQPSDMG+AIYYLLTAPFCTGV+LDVDGGHGIRQYANPM DPMRR+
Sbjct:   32 NVIIVGGSSGMGLAAARQVLQHGGHVLLVSRSVSKLERARDQLACP---ERTSIAAMDITDESQVQAF--TLPPLD---WDGLVITAAGRAPHEPVLTLETNHARTLLDSKLWGAYHCAKHWSPHLCDDGAVVLCAGILNRRPGVNCAPLAMANGALEGLTRTLALEWAPRLRVNCLSPGFCDTERFDHMDPSRKHAMLEHTASSLPLQKVGQPSDMGEAIYYLLTAPFCTGVVLDVDGGHGIRQYANPMNDPMRRN 280          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A448ZFF2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFF2_9STRA)

HSP 1 Score: 326 bits (836), Expect = 2.890e-108
Identity = 165/273 (60.44%), Postives = 193/273 (70.70%), Query Frame = 3
Query:  153 LNVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGADVSIAD--------------LDVSDEGAVEKFAETLRE-SSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRRS 926
            +N+I VGGSSGM           GGK L+VSRS  KL  A +E+ +  P  D S  D              LD SDE AVE F++TL      E+WD LV+SAAG APHG +E L TS TR + E+K W+AYHCAK++GP L EG  + FVAG+LNRRPG NC PLA  NGALEGLTR+LALEWGP+LRVNCLSPGFCDTERFD M  +RKE M++NTA SLPL++ G P DMG+ IYYLLTA FCTGV+LDVDGGHGIRQYAN   DPMR+S
Sbjct:   40 INIIVVGGSSGMGKAAAIACVKRGGKALIVSRSEEKLARAAEEIQSYAPQRDTSCEDSDDESTASMVTTAVLDASDEEAVELFSKTLPSVMGDETWDGLVISAAGSAPHGAMEELETSKTRDLFESKFWSAYHCAKYIGPKLSEGSGVVFVAGVLNRRPGKNCVPLASTNGALEGLTRSLALEWGPRLRVNCLSPGFCDTERFDRMDPERKEAMLANTADSLPLKRTGVPEDMGEGIYYLLTAGFCTGVVLDVDGGHGIRQYANAQSDPMRQS 312          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A7S2Y9I8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y9I8_9STRA)

HSP 1 Score: 321 bits (823), Expect = 2.210e-106
Identity = 175/303 (57.76%), Postives = 216/303 (71.29%), Query Frame = 3
Query:   78 IRRMLSVIIRSVMILLLAALGKASALNVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGAD---------VSIADLDVSDEGAVEKFAETLRESSTES----WDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLL----QEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGP----KLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRR 923
            I ++LS+ +  V  L LA+   +++ NVI +GGSSGM           GG+VLLVSRS+ KL++A++EL+  +             + +A +DV++E  V   A +   +   S    W+ LV++AAG+A HG VE+L + D R MME+K+W AY+CAKHLG  L    ++G AI F AGI+NRRPGLNCAPLAMANGALEGLTRTLALE G     ++RVNCLSPGFCDTERF+HM   RK+QMM NTAASLPLQKVGQP DMGQAIYYLLTAPFCTGVILDVDGGHGIRQYAN  KDPMR+
Sbjct:    7 ILQLLSLPLFLVYSLALASSPTSASRNVIVIGGSSGMGKAAAFEVLSHGGRVLLVSRSMEKLKNAKKELMVAISSTGEGKEDVEDLIHLASVDVTNEDQVAALAASQMPTDDNSASIPWNGLVITAAGRAAHGSVESLSSGDARDMMESKLWGAYYCAKHLGTKLDTSSEDGAAIVFCAGIINRRPGLNCAPLAMANGALEGLTRTLALELGTSTQGRIRVNCLSPGFCDTERFNHMDPTRKQQMMENTAASLPLQKVGQPQDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANAQKDPMRQ 309          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A8J2WUW4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WUW4_9STRA)

HSP 1 Score: 317 bits (813), Expect = 2.160e-105
Identity = 165/274 (60.22%), Postives = 205/274 (74.82%), Query Frame = 3
Query:  120 LLLAALGKASALN---VICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGAD---VSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRR 923
            L+LA +  A+A+     I VGGSSGM           GG  LLVSRS  KL+ AR+E++ +  GAD   V  A +D +DE +V  FA  L   + +S+DALVVSAAG+APHGPV  L  +D R MM++K WTA+HCAKH+ P+L +GG+I FVAG+LNRRPG NCAPLA  NGALEGLTR+LAL+ GP+LRVNC+SPGFCDTERFDHM  +RK  M++NTAASLPLQ+VG+P+DMG AI+YL +A F TGV+LDVDGGHG+RQYA+   DPMRR
Sbjct:    3 LVLAWIAAATAMTPQRAIVVGGSSGMGKAAAKQFVKNGGHALLVSRSADKLQRAREEIMRET-GADAYAVDTAAVDATDEASVAAFAAGL---APDSYDALVVSAAGRAPHGPVAELDVADARGMMDSKFWTAWHCAKHVAPVLADGGSITFVAGVLNRRPGKNCAPLAATNGALEGLTRSLALDLGPRLRVNCMSPGFCDTERFDHMDTERKAAMLANTAASLPLQRVGEPADMGAAIHYLASAQFVTGVVLDVDGGHGVRQYADAATDPMRR 272          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A7S1Z6C0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z6C0_TRICV)

HSP 1 Score: 318 bits (815), Expect = 5.210e-105
Identity = 162/268 (60.45%), Postives = 193/268 (72.01%), Query Frame = 3
Query:  156 NVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVP------GAD--VSIADLDVSDEGAVEKFAETLR---ESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRRS 926
            NVI VGGSSGM           GG+ L+  RS  +L+ A +E+ + V       GA+  V    LD SDE  VE+FA  LR   +     WD LVVSAAG APHGPV +L TS TR + +TK W+AYHCAKH+ PLL++GG++ FVAG+LNRRPG+NCAPLA  NGALEGLTR LALE+GP+LRVNCLSPGFCDTERFD M   RK  M++NTA SLPL KVG+P DMG+AIYYLLTA F TG +LDVDGGHG+RQYAN   DPMR++
Sbjct:   47 NVIVVGGSSGMGKAAAVAAVRRGGRALIAGRSEERLQRAAEEIRSYVSPEEDGDGAEDRVRTVVLDASDESEVERFAALLRGEGKDGESEWDGLVVSAAGPAPHGPVTSLETSKTRGLFDTKFWSAYHCAKHVSPLLRDGGSVAFVAGVLNRRPGINCAPLAATNGALEGLTRALALEFGPRLRVNCLSPGFCDTERFDRMDPDRKAAMLANTAESLPLGKVGRPEDMGEAIYYLLTAGFVTGTVLDVDGGHGVRQYANAANDPMRKT 314          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A7S4RXA8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RXA8_9STRA)

HSP 1 Score: 314 bits (805), Expect = 1.220e-104
Identity = 154/241 (63.90%), Postives = 190/241 (78.84%), Query Frame = 3
Query:  222 GGKVLLVSRSLTKLESARQELLTQVPG-------ADVSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRR 923
            GG  L+VSRS  KLE A +E++++            VS A LD SDE AVE+F  + +  + E WD LV SAAG+APHGP++ L TS T+ +M+ K W AYHCAKH+ P L++GGA  FV+G+LNRRPG+NC+PLA  NGALEGLTR+LALE+GP++RVNC+SPGFCDTERFDHM A+RK+ M+ NTA SLPL++VGQPSDMG+AIYYLLTAPF TGV+LDVDGGHGIRQYANP  DPMR+
Sbjct:    5 GGNALIVSRSPEKLEKASKEIISKAAANACCEKIGIVSTAILDASDESAVEEFICSTQVMNGE-WDGLVFSAAGRAPHGPIDKLDTSLTKELMDIKFWGAYHCAKHIVPKLRDGGACVFVSGVLNRRPGINCSPLACTNGALEGLTRSLALEFGPRIRVNCMSPGFCDTERFDHMDAERKKAMLENTADSLPLKRVGQPSDMGEAIYYLLTAPFVTGVVLDVDGGHGIRQYANPNSDPMRK 244          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: R1B6I3_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1B6I3_EMIHU)

HSP 1 Score: 310 bits (794), Expect = 2.820e-102
Identity = 149/255 (58.43%), Postives = 188/255 (73.73%), Query Frame = 3
Query:  156 NVICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGADVSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMR 920
            + I +GGSSGM           GG VLL SR+  +L+SA  ++  +VP A ++   LD  DE AV+ F E L       WDAL+ +AAG+APHGP+  L T+DT  + ++K WTA++  KHL P L +GGA+   AG+LNRRPG+NC+PLA  NGALEGLTR LALE+GP+LRVNCLSPGFCDTERFDHMPA+RK  M++NTAASLPL++VG PSDMG+A+YYL++APF TGV+LD DGGH IRQYA+   DPMR
Sbjct:   18 SAIVIGGSSGMGRAAAIAVASRGGSVLLASRTQARLDSAADDIRREVPDAQLTTRVLDARDEAAVKAFGEELEGR----WDALICTAAGRAPHGPIGELDTADTAALFDSKFWTAHNVCKHLAPRLADGGAVALTAGLLNRRPGMNCSPLAAVNGALEGLTRALALEFGPRLRVNCLSPGFCDTERFDHMPAERKAAMLANTAASLPLRRVGAPSDMGEALYYLVSAPFVTGVVLDCDGGHHIRQYADASSDPMR 268          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A7R9WXI9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WXI9_9STRA)

HSP 1 Score: 305 bits (780), Expect = 7.560e-102
Identity = 141/176 (80.11%), Postives = 155/176 (88.07%), Query Frame = 3
Query:  396 DALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDPMRR 923
            D LV+SAAGKAPHGP+ +L TSD R MMETKVWTAYHCAKH+   L EGG++ FVAGILNRRPG+NC+PLAMANGALEGLTR+LALEWGP+LRVNCLSPGFCDTERFDH+  +RK  M +NTA SLPLQKVGQPSDMG AIYYL TAPF TGVILDVDGGHGIRQYANP  DPMR+
Sbjct:    1 DGLVISAAGKAPHGPMTSLATSDARDMMETKVWTAYHCAKHISVKLNEGGSVTFVAGILNRRPGMNCSPLAMANGALEGLTRSLALEWGPRLRVNCLSPGFCDTERFDHLSEERKASMFANTAGSLPLQKVGQPSDMGDAIYYLATAPFTTGVILDVDGGHGIRQYANPQNDPMRK 176          
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Match: A0A7S3ZSS3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSS3_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.500e-101
Identity = 162/271 (59.78%), Postives = 202/271 (74.54%), Query Frame = 3
Query:  120 LLLAALGKASALN---VICVGGSSGMXXXXXXXXXXXGGKVLLVSRSLTKLESARQELLTQVPGAD---VSIADLDVSDEGAVEKFAETLRESSTESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQEGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCLSPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTAPFCTGVILDVDGGHGIRQYANPMKDP 914
            L+LA +  A+A+     I VGGSSGM           GG  LLVSRS  KL+ AR+E++ +  GAD   V  A +D +DE +V  FA  L   + +S+DALVVSAAG+APHGPV  L  +D R MM++K WTA+HCAKH+ P+L +GG+I FVAG+LNRRPG NCAPLA  NGALEGLTR+LAL+ GP+LRVNC+SPGFCDTERFDHM  +RK  M++NTAASLPLQ+VG+P+DMG AI+YL +A F TGV+LDVDGGHG+RQYA+   DP
Sbjct:    3 LVLAWIAAATAMTPQRAIVVGGSSGMGKAAAKQFVKNGGHALLVSRSADKLQRAREEIMRET-GADAYAVDTAAVDATDEASVAAFAAGL---APDSYDALVVSAAGRAPHGPVAELDVADARGMMDSKFWTAWHCAKHVAPVLADGGSITFVAGVLNRRPGKNCAPLAATNGALEGLTRSLALDLGPRLRVNCMSPGFCDTERFDHMDTERKAAMLANTAASLPLQRVGEPADMGAAIHYLASAQFVTGVVLDVDGGHGVRQYADAATDP 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1093.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6T5NAE1_HETAK6.340e-188100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5KSI1_FISSO2.770e-11266.15Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A448ZFF2_9STRA2.890e-10860.44Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2Y9I8_9STRA2.210e-10657.76Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A8J2WUW4_9STRA2.160e-10560.22Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1Z6C0_TRICV5.210e-10560.45Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4RXA8_9STRA1.220e-10463.90Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
R1B6I3_EMIHU2.820e-10258.43Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7R9WXI9_9STRA7.560e-10280.11Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3ZSS3_9STRA1.500e-10159.78Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1093contigH-akashiwo_Contig1093:229793..230721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD09287
PFAMsadh_short,adh_short_C2
Model size929
Max annot lvl2759|Eukaryota
KEGG rclassRC00089
KEGG koko:K04708
KEGG ReactionR02978
KEGG Pathwayko00600,ko01100,map00600,map01100
KEGG ModuleM00094,M00099
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.78e-104
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
EC1.1.1.102
Descriptionoxidation-reduction process
Cds size843
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387075.1146228-UTR-H-akashiwo_Contig1093:229792..2298781681387075.1146228-UTR-H-akashiwo_Contig1093:229792..229878Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1093 229793..229878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387075.1252334-CDS-H-akashiwo_Contig1093:229878..2307211681387075.1252334-CDS-H-akashiwo_Contig1093:229878..230721Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1093 229879..230721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1093.5.1prot_H-akashiwo_Contig1093.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1093 229879..230721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1093.5.1

>prot_H-akashiwo_Contig1093.5.1 ID=prot_H-akashiwo_Contig1093.5.1|Name=mRNA_H-akashiwo_Contig1093.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=281bp
MLSVIIRSVMILLLAALGKASALNVICVGGSSGMGKASALEVVRNGGKVL
LVSRSLTKLESARQELLTQVPGADVSIADLDVSDEGAVEKFAETLRESST
ESWDALVVSAAGKAPHGPVETLPTSDTRLMMETKVWTAYHCAKHLGPLLQ
EGGAICFVAGILNRRPGLNCAPLAMANGALEGLTRTLALEWGPKLRVNCL
SPGFCDTERFDHMPAQRKEQMMSNTAASLPLQKVGQPSDMGQAIYYLLTA
PFCTGVILDVDGGHGIRQYANPMKDPMRRS*
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mRNA from alignment at H-akashiwo_Contig1093:229793..230721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1093.5.1 ID=mRNA_H-akashiwo_Contig1093.5.1|Name=mRNA_H-akashiwo_Contig1093.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=929bp|location=Sequence derived from alignment at H-akashiwo_Contig1093:229793..230721+ (Heterosigma akashiwo CCMP452)
CAATGTTGAAAGGCTAAAGTGAACTGGTGTTCTTTGGACCGAAGGCTGCC TGAGCATTATTCAAATTCACTTAATCGATAAGAAGAATGCTATCGGTCAT CATAAGGTCGGTGATGATCTTATTGCTGGCAGCCCTGGGCAAAGCCTCGG CGCTCAATGTCATATGTGTTGGAGGGAGCAGCGGTATGGGTAAAGCCTCG GCTCTTGAAGTGGTTCGGAATGGGGGGAAAGTTCTCTTGGTAAGCCGATC GCTCACGAAGCTTGAGAGTGCGCGGCAAGAACTGCTAACCCAGGTGCCGG GTGCAGATGTTTCCATCGCAGACTTGGATGTTTCTGATGAGGGGGCGGTT GAAAAGTTTGCTGAGACTCTCCGTGAAAGCTCTACTGAAAGCTGGGATGC TTTGGTTGTATCAGCAGCAGGAAAGGCTCCACATGGACCGGTAGAAACCT TGCCTACTTCAGACACAAGATTAATGATGGAGACGAAAGTGTGGACAGCC TATCACTGTGCGAAGCACCTTGGCCCTTTATTGCAAGAGGGCGGTGCAAT ATGCTTTGTGGCTGGTATTCTGAACCGACGCCCCGGTCTGAACTGCGCGC CACTGGCTATGGCAAATGGCGCGCTTGAGGGCTTGACAAGAACTCTTGCA CTTGAATGGGGCCCAAAGTTGAGGGTGAATTGCCTGTCACCTGGGTTCTG TGACACTGAGCGCTTTGATCACATGCCTGCACAGCGAAAAGAACAGATGA TGTCAAATACAGCTGCCTCCTTGCCACTTCAAAAAGTGGGGCAGCCGAGT GACATGGGACAAGCAATCTACTATCTTCTGACAGCACCCTTTTGCACTGG CGTAATCTTGGATGTGGACGGTGGTCATGGGATCCGACAGTATGCAAACC CGATGAAAGACCCAATGAGAAGATCTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1093:229793..230721+

>mRNA_H-akashiwo_Contig1093.5.1 ID=mRNA_H-akashiwo_Contig1093.5.1|Name=mRNA_H-akashiwo_Contig1093.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=843bp|location=Sequence derived from alignment at H-akashiwo_Contig1093:229793..230721+ (Heterosigma akashiwo CCMP452)
ATGCTATCGGTCATCATAAGGTCGGTGATGATCTTATTGCTGGCAGCCCT
GGGCAAAGCCTCGGCGCTCAATGTCATATGTGTTGGAGGGAGCAGCGGTA
TGGGTAAAGCCTCGGCTCTTGAAGTGGTTCGGAATGGGGGGAAAGTTCTC
TTGGTAAGCCGATCGCTCACGAAGCTTGAGAGTGCGCGGCAAGAACTGCT
AACCCAGGTGCCGGGTGCAGATGTTTCCATCGCAGACTTGGATGTTTCTG
ATGAGGGGGCGGTTGAAAAGTTTGCTGAGACTCTCCGTGAAAGCTCTACT
GAAAGCTGGGATGCTTTGGTTGTATCAGCAGCAGGAAAGGCTCCACATGG
ACCGGTAGAAACCTTGCCTACTTCAGACACAAGATTAATGATGGAGACGA
AAGTGTGGACAGCCTATCACTGTGCGAAGCACCTTGGCCCTTTATTGCAA
GAGGGCGGTGCAATATGCTTTGTGGCTGGTATTCTGAACCGACGCCCCGG
TCTGAACTGCGCGCCACTGGCTATGGCAAATGGCGCGCTTGAGGGCTTGA
CAAGAACTCTTGCACTTGAATGGGGCCCAAAGTTGAGGGTGAATTGCCTG
TCACCTGGGTTCTGTGACACTGAGCGCTTTGATCACATGCCTGCACAGCG
AAAAGAACAGATGATGTCAAATACAGCTGCCTCCTTGCCACTTCAAAAAG
TGGGGCAGCCGAGTGACATGGGACAAGCAATCTACTATCTTCTGACAGCA
CCCTTTTGCACTGGCGTAATCTTGGATGTGGACGGTGGTCATGGGATCCG
ACAGTATGCAAACCCGATGAAAGACCCAATGAGAAGATCTTAA
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