mRNA_H-akashiwo_Contig108.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig108.3.1
Unique NamemRNA_H-akashiwo_Contig108.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: W4HCB9_9STRA (Dynein light chain n=26 Tax=Oomycota TaxID=4762 RepID=W4HCB9_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.720e-57
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM EDMQQDAVDCASQALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
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BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: A0A2C9K100_BIOGL (Dynein light chain n=4 Tax=Euthyneura TaxID=216307 RepID=A0A2C9K100_BIOGL)

HSP 1 Score: 179 bits (455), Expect = 2.720e-57
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM+EDMQQDAVDCA+QALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
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BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: C1FDC9_MICCC (Dynein light chain n=2 Tax=Eukaryota TaxID=2759 RepID=C1FDC9_MICCC)

HSP 1 Score: 179 bits (454), Expect = 3.860e-57
Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM+EDMQQDAVDCA+QALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
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BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: A0A485LAB0_9STRA (Dynein light chain n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAB0_9STRA)

HSP 1 Score: 179 bits (455), Expect = 7.910e-57
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM EDMQQDAVDCASQALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   35 MSERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 123
[Close]
BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: A0A6A3E1H5_9STRA (Dynein light chain n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3E1H5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.020e-56
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM EDMQQDAVDCASQALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   43 MSERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 131
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BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: C1ML17_MICPC (Dynein light chain n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1ML17_MICPC)

HSP 1 Score: 178 bits (451), Expect = 1.110e-56
Identity = 84/89 (94.38%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM+ED+QQDAVDCA+QALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MSERKAVIKNADMSEDLQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
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BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: M4BH12_HYAAE (Dynein light chain n=5 Tax=Eukaryota TaxID=2759 RepID=M4BH12_HYAAE)

HSP 1 Score: 178 bits (451), Expect = 1.110e-56
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            M+ERKAVIKNADM EDMQQDAVDCASQALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MAERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
[Close]
BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: H3BFR6_LATCH (Dynein light chain n=6 Tax=Eukaryota TaxID=2759 RepID=H3BFR6_LATCH)

HSP 1 Score: 179 bits (453), Expect = 1.240e-56
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM EDMQQDAVDCA+QALE+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   27 MSERKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 115
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BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: A0A7L9QEK2_9CHLO (Dynein light chain n=1 Tax=Trebouxia sp. TR9 TaxID=1825957 RepID=A0A7L9QEK2_9CHLO)

HSP 1 Score: 178 bits (452), Expect = 1.550e-56
Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MSERKAVIKNADM+EDMQQDA+DCA+QALE+YN+EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:   23 MSERKAVIKNADMSEDMQQDAIDCATQALEKYNVEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 111
[Close]
BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Match: A0A401QGE4_SCYTO (Dynein light chain n=3 Tax=Chondrichthyes TaxID=7777 RepID=A0A401QGE4_SCYTO)

HSP 1 Score: 177 bits (450), Expect = 1.580e-56
Identity = 84/89 (94.38%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 267
            MS+RKAVIKNADM+EDMQQDAVDCA+QA+E+YNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig108.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4HCB9_9STRA2.720e-5797.75Dynein light chain n=26 Tax=Oomycota TaxID=4762 Re... [more]
A0A2C9K100_BIOGL2.720e-5796.63Dynein light chain n=4 Tax=Euthyneura TaxID=216307... [more]
C1FDC9_MICCC3.860e-5795.51Dynein light chain n=2 Tax=Eukaryota TaxID=2759 Re... [more]
A0A485LAB0_9STRA7.910e-5797.75Dynein light chain n=1 Tax=Aphanomyces stellatus T... [more]
A0A6A3E1H5_9STRA1.020e-5697.75Dynein light chain n=2 Tax=Phytophthora TaxID=4783... [more]
C1ML17_MICPC1.110e-5694.38Dynein light chain n=2 Tax=Micromonas pusilla TaxI... [more]
M4BH12_HYAAE1.110e-5695.51Dynein light chain n=5 Tax=Eukaryota TaxID=2759 Re... [more]
H3BFR6_LATCH1.240e-5696.63Dynein light chain n=6 Tax=Eukaryota TaxID=2759 Re... [more]
A0A7L9QEK2_9CHLO1.550e-5693.26Dynein light chain n=1 Tax=Trebouxia sp. TR9 TaxID... [more]
A0A401QGE4_SCYTO1.580e-5694.38Dynein light chain n=3 Tax=Chondrichthyes TaxID=77... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig108contigH-akashiwo_Contig108:785101..785537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008610951.1
Preferred nameDYNLL1
PFAMsDynein_light
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000086,GO:0000278,GO:0000775,GO:0000776,GO:0001505,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005875,GO:0005886,GO:0005929,GO:0006807,GO:0006809,GO:0006810,GO:0006887,GO:0006888,GO:0006914,GO:0006928,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007346,GO:0008022,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010563,GO:0010564,GO:0010638,GO:0010646,GO:0010647,GO:0010817,GO:0010970,GO:0012505,GO:0012506,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0019220,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030141,GO:0030154,GO:0030234,GO:0030235,GO:0030286,GO:0030424,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031344,GO:0031346,GO:0031410,GO:0031503,GO:0031982,GO:0032024,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032838,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033043,GO:0033267,GO:0034641,GO:0035721,GO:0035735,GO:0035774,GO:0036230,GO:0042073,GO:0042119,GO:0042133,GO:0042136,GO:0042325,GO:0042326,GO:0042623,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0043462,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044248,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045019,GO:0045055,GO:0045321,GO:0045428,GO:0045505,GO:0045724,GO:0045936,GO:0046209,GO:0046883,GO:0046887,GO:0046903,GO:0046907,GO:0046982,GO:0046983,GO:0048002,GO:0048193,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048869,GO:0050708,GO:0050714,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051959,GO:0060271,GO:0060341,GO:0060491,GO:0061178,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070820,GO:0070821,GO:0070925,GO:0071840,GO:0071944,GO:0072593,GO:0072686,GO:0090087,GO:0090276,GO:0090277,GO:0097110,GO:0097458,GO:0097542,GO:0097708,GO:0097711,GO:0098588,GO:0098687,GO:0098772,GO:0098805,GO:0099111,GO:0099503,GO:0099568,GO:0101002,GO:0101003,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120111,GO:0140056,GO:1901987,GO:1901990,GO:1902017,GO:1902115,GO:1902117,GO:1902494,GO:1902749,GO:1902855,GO:1902857,GO:1903047,GO:1903409,GO:1903426,GO:1903427,GO:1903530,GO:1903532,GO:1904115,GO:1904406,GO:1904951,GO:2000377,GO:2000378,GO:2000574,GO:2000576,GO:2000580,GO:2000582,GO:2001057
Exons2
Evalue4.46e-58
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size270
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.5083597-CDS-H-akashiwo_Contig108:785100..7852081681387070.5083597-CDS-H-akashiwo_Contig108:785100..785208Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig108 785101..785208 +
1681387070.5188298-CDS-H-akashiwo_Contig108:785375..7855371681387070.5188298-CDS-H-akashiwo_Contig108:785375..785537Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig108 785376..785537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig108.3.1prot_H-akashiwo_Contig108.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig108 785101..785537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig108.3.1

>prot_H-akashiwo_Contig108.3.1 ID=prot_H-akashiwo_Contig108.3.1|Name=mRNA_H-akashiwo_Contig108.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=90bp
MSERKAVIKNADMAEDMQQDAVDCASQALERYNIEKDIAAFIKKEFDKKY
NPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG*
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mRNA from alignment at H-akashiwo_Contig108:785101..785537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig108.3.1 ID=mRNA_H-akashiwo_Contig108.3.1|Name=mRNA_H-akashiwo_Contig108.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=437bp|location=Sequence derived from alignment at H-akashiwo_Contig108:785101..785537+ (Heterosigma akashiwo CCMP452)
ATGTCTGAGCGTAAGGCCGTCATAAAAAATGCCGATATGGCAGAGGACAT
GCAACAGGATGCCGTGGATTGCGCTTCTCAGGCGCTTGAAAGATATAACA
TCGAAAAGGTTTTGGTTTTCTTACATTCTTCGATGACTCTGAAAATATCT
GCACTTGTGCTTGTGAAATCCGGCTGTGAGACCATTCCTGCCTCAATTTT
CAGAATATTATCGGTTTTAGCACCCTCATTTGAGAATCTAATCCCAAATT
TCATTTTATTTTTCCCTTTCCACAGGACATTGCCGCTTTTATCAAGAAAG
AGTTTGACAAGAAGTACAACCCAACATGGCACTGCATTGTGGGCCGGAAC
TTTGGCTCGTATGTGACCCACGAAACCAAACACTTCATCTATTTTTATCT
GGGGCAAGTTGCCATTTTGCTTTTCAAGTCGGGGTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig108:785101..785537+

>mRNA_H-akashiwo_Contig108.3.1 ID=mRNA_H-akashiwo_Contig108.3.1|Name=mRNA_H-akashiwo_Contig108.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=270bp|location=Sequence derived from alignment at H-akashiwo_Contig108:785101..785537+ (Heterosigma akashiwo CCMP452)
ATGTCTGAGCGTAAGGCCGTCATAAAAAATGCCGATATGGCAGAGGACAT
GCAACAGGATGCCGTGGATTGCGCTTCTCAGGCGCTTGAAAGATATAACA
TCGAAAAGGACATTGCCGCTTTTATCAAGAAAGAGTTTGACAAGAAGTAC
AACCCAACATGGCACTGCATTGTGGGCCGGAACTTTGGCTCGTATGTGAC
CCACGAAACCAAACACTTCATCTATTTTTATCTGGGGCAAGTTGCCATTT
TGCTTTTCAAGTCGGGGTAG
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