mRNA_H-akashiwo_Contig1077.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1077.3.1
Unique NamemRNA_H-akashiwo_Contig1077.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S4DB43_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB43_HETAK)

HSP 1 Score: 535 bits (1378), Expect = 5.270e-186
Identity = 258/266 (96.99%), Postives = 260/266 (97.74%), Query Frame = 1
Query:    1 DDGPFTMFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVPVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNMNGFSASRLLRLGFPQGGVGPPIYWTTHNNRVAVYVEVVGGEALFIGYADDNGFTVEGGPDELGALVELA 798
            DDGPFT FELRREIFQRGGYKAPGPDMIIGRVLKECIDEV  HLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASK LEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRV VAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLN+NGFSAS+LLRLGFPQGGVGPPIYWTTHNNRVAVYVEV GGEALFIGYADDNGFTVEGGPDELGALVELA
Sbjct:  192 DDGPFTTFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVEPHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKILEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVLVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNVNGFSASKLLRLGFPQGGVGPPIYWTTHNNRVAVYVEV-GGEALFIGYADDNGFTVEGGPDELGALVELA 456          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S3Y8X7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8X7_HETAK)

HSP 1 Score: 450 bits (1158), Expect = 1.360e-154
Identity = 231/243 (95.06%), Postives = 232/243 (95.47%), Query Frame = 1
Query:  625 GFPQGGVGPPIYWTTHNNRVAVYVEVVGGEALFIGYADDNGFTVEGGPDELGALVELAARVLVSVIKQCRPLKINFSKDPEKMKAMAFTTCRVGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRRVVKQIYKEAVEPIMLNGVVAWAAALTKKGAQGRLRSVQRLAALAMTGCFRTTSTPAALALAGLLPAEMAAGKV 1353
            G    GVGPPIYWTTHN+RVAVYVEV GGEALFIGYADDNGFTVEGGPDELGALVELAARVLVSVIKQCRPLKINFSKDPEKMKAMAFTTCR GHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGR VVKQIYK AVEPIMLNGVVAWAAAL KKGAQ RLRSVQRLAALAMTGCFRTTST AALALAGLLPAEMAAGKV
Sbjct:   56 GLSPRGVGPPIYWTTHNDRVAVYVEV-GGEALFIGYADDNGFTVEGGPDELGALVELAARVLVSVIKQCRPLKINFSKDPEKMKAMAFTTCREGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRSVVKQIYKGAVEPIMLNGVVAWAAALPKKGAQRRLRSVQRLAALAMTGCFRTTSTKAALALAGLLPAEMAAGKV 297          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S4DD44_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD44_HETAK)

HSP 1 Score: 410 bits (1055), Expect = 9.630e-131
Identity = 220/464 (47.41%), Postives = 289/464 (62.28%), Query Frame = 1
Query:   13 FTMFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVPVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNMNGFSASRLLRLGFPQGGVGPPIYWTTHNNRVAVYVEVVG-----------------GEALFIGYADDNGFTVEGGPDELGALVELAARVLVSVIKQCRPLKINFSKDPEKMKAMAFTTC---RVGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRRVVKQIYKEAVEPIMLNGVVAWAAALTKKGAQGRLRSVQRLAALAMTGCFRTTSTPAALALAGLLPAEMAA 1344
            ++  E+RR + +  GYKAPGPDMI G++L+   DE+  HLA + NA   LGYF R WK +  VA  KPGKKD+T+ KAYR+L+L     K  E +   R +WRAE   W H    GFR  R+ D AV  +V   E AI R R  + + FDV+GAFN+SWHPA+L  L ++GCPPGLFC ++SFLR+R+C L +NG+SAS+ L  GFPQG +     W  H++RV  +++ +                  GE+    YADDN    EG PD+LGALV+    +LV + ++C   KI FSKD  K++ + FTT    RVG  GKD+  P +VLDC DMP+WH H + V  EL  L   LD+KL+WA+H+    +KA+ L   +  C R  WGL  RVVK ++K AVEPI+LNGV  WAAAL +KG    LR  QR+AALA T CF+TTST A LALAG+ P +M A
Sbjct:  150 YSQEEVRRVVGRSRGYKAPGPDMICGKLLEVLCDELLPHLAELYNAGLTLGYFARPWKGDLEVALGKPGKKDFTVYKAYRMLSLTNEMGKDQEYLGVRRFNWRAENQGWIHPSQSGFRSGRSVDMAVGGVVAPVEHAISRRRAVLLMVFDVEGAFNKSWHPALLEGLAQRGCPPGLFCQVASFLRDRKCVLVINGYSASKELTRGFPQGVIWSTSLWNIHDDRVLHHLDDIAEQLKVQGRIKEDEAEGLGESKPGAYADDNWNLQEGDPDDLGALVQCGGEILVELFRRCEEAKIAFSKD--KLEVIGFTTAKERRVG--GKDVKFPDMVLDCPDMPQWHNHRVVVQRELEMLSFALDKKLSWAAHVSKRVEKARVLLARLQMCVRRTWGLKPRVVKLLWKGAVEPILLNGVGVWAAALKRKGVVKALRGAQRMAALAKTRCFKTTSTEAVLALAGMPPIDMVA 609          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S3Y2N9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N9_HETAK)

HSP 1 Score: 314 bits (804), Expect = 4.730e-103
Identity = 162/187 (86.63%), Postives = 171/187 (91.44%), Query Frame = 1
Query:  793 LAARVLVSVIKQCRPLKINFSKDPEKMKAMAFTTCRVGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRRVVKQIYKEAVEPIMLNGVVAWAAALTKKGAQGRLRSVQRLAALAMTGCFRTTSTPAALALAGLLPAEMAAGKV 1353
            +AARVLVSVIKQCRPLKINFSKDPEKMKA+AFTTCR G RGKDI VP  VLDCQD+PEWHGHSIP   ++   GVILDRKLTW SHIEACTKKAKQLAVAM SCARAKWGLGRRVV+QIYK AVEPIMLNGVVAWAAAL+K+GAQ RLRSVQRLAALAMTGCFRTTST AALALAGLLPAEMAAGK+
Sbjct:    1 MAARVLVSVIKQCRPLKINFSKDPEKMKAIAFTTCRDGQRGKDIAVPDTVLDCQDIPEWHGHSIPFGADIP--GVILDRKLTWISHIEACTKKAKQLAVAMASCARAKWGLGRRVVQQIYKGAVEPIMLNGVVAWAAALSKRGAQRRLRSVQRLAALAMTGCFRTTSTNAALALAGLLPAEMAAGKL 185          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S4DEH0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEH0_HETAK)

HSP 1 Score: 302 bits (774), Expect = 5.390e-98
Identity = 155/161 (96.27%), Postives = 155/161 (96.27%), Query Frame = 1
Query:  871 MKAMAFTTCRVGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRRVVKQIYKEAVEPIMLNGVVAWAAALTKKGAQGRLRSVQRLAALAMTGCFRTTSTPAALALAGLLPAEMAAGKV 1353
            MKAMAFTTCR GHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGR VVKQIYK AVEPIMLNGVVAWAAAL KKGAQ RLRSVQRLAALAMTGCFRTTST AALALAGLLPAEMAAGKV
Sbjct:    1 MKAMAFTTCREGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRSVVKQIYKGAVEPIMLNGVVAWAAALPKKGAQRRLRSVQRLAALAMTGCFRTTSTKAALALAGLLPAEMAAGKV 161          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S3Y2G0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2G0_HETAK)

HSP 1 Score: 272 bits (695), Expect = 1.330e-84
Identity = 132/143 (92.31%), Postives = 135/143 (94.41%), Query Frame = 1
Query:    1 DDGPFTMFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVS-WRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAI 426
            DDGPFT FELRREIFQRGGYKAPGPDMIIGRVLKECIDEV  HLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASK LEGM+TSRVS WRAER SWFHE AYG RPDRN+DGAVEELVTRA+RAI
Sbjct:  192 DDGPFTTFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVEPHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKILEGMMTSRVSSWRAERRSWFHEPAYGSRPDRNRDGAVEELVTRADRAI 334          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S3Y6J6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J6_HETAK)

HSP 1 Score: 245 bits (626), Expect = 3.170e-74
Identity = 129/295 (43.73%), Postives = 175/295 (59.32%), Query Frame = 1
Query:   13 FTMFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVPVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNMNGFSASRLLRLGFPQGGVGPPIYWTTHNNRVAVYVEVVG-----------------GEALFIGYADDNGFTVEGGPDELGALVELAARVLVSVIKQCRPLKI 846
            ++  E+RR + +  GYKAPG DMI G++L+   DE+  HLA + NA   LGYF R WK +  VA  KPGKKD+T+ KAYR+L+L     K  E +   R +WRAE   W H    GFR  R+ D AV  +V   E AI R R  + + FDV+GAFN+SWHPA+L  L ++GCPPGLFC ++SFLR+R+C L +NG+SAS+ L  GFPQG +     W  H++RV  +++ +                  GE+    YADDN    EG  D+LGALV+     LV + ++C   KI
Sbjct:   48 YSQEEVRRVVGRTRGYKAPGADMICGKLLEVLCDELLPHLAELYNAGLTLGYFARPWKGDLEVALGKPGKKDFTVYKAYRMLSLTNEMGKDQEYLGVRRFNWRAENQGWIHPSQSGFRSGRSVDMAVGGVVAPVEHAISRRRAVLLMVFDVEGAFNKSWHPALLEGLAQRGCPPGLFCQVASFLRDRKCVLVINGYSASKELTRGFPQGVIWSTSLWNIHDDRVLHHLDDIAEQLKVQGRIKEDEAEGLGESTPGAYADDNWNLQEGDQDDLGALVQCGGETLVELFRRCEEAKI 342          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S4D502_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D502_HETAK)

HSP 1 Score: 248 bits (633), Expect = 5.800e-74
Identity = 120/237 (50.63%), Postives = 157/237 (66.24%), Query Frame = 1
Query:   10 PFTMFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVPVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNMNGFSASRLLRLGFPQGGVGPPIYWTTHNNRVAVYVEVVGGEAL 720
            P T  E+R  + +R G+KAPGPDM+ GRVL E  + +  +L  + NAC  LGYFP  WKV+  +A +KPGK  Y ++KAYRL+ LLC   K LEG++  R SW AE+    H   YG+R    ++  VE++V+ AE A+  G+V +AV FDVDGAFN+SWHPA+L  L E+ CPPGLFCL +S LR+R+CNL +NGF AS+ L  GFPQGG   P  W  H +RV   VE +G E L
Sbjct:  180 PLTEEEVRWVVMRRRGFKAPGPDMVYGRVLAEAGEILMPYLRPLYNACLKLGYFPGKWKVDLEIALSKPGKPSYDVIKAYRLICLLCEMGKDLEGLLARRQSWWAEQEGRLHPRQYGYRAGMAREMMVEDVVSEAEEAMDNGQVLLAVVFDVDGAFNKSWHPAMLAGLAERNCPPGLFCLSASQLRDRECNLRVNGFEASKQLTRGFPQGGKKSPDDWKIHGDRVPRAVEEIGEELL 416          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S3Y0V7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0V7_HETAK)

HSP 1 Score: 221 bits (562), Expect = 1.230e-64
Identity = 109/238 (45.80%), Postives = 150/238 (63.03%), Query Frame = 1
Query:    1 DDGPFTMFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVPVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNMNGFSASRLLRLGFPQGGVGPPIYWTTHNNRVAVYVEVVGGE 714
            ++ P+T +E+R    +  G+KAPGPDMI G+VL+   +E+  H+  + NA   LGY PR WK +   A  K  KKDYT++KAYRLL+L     K  E +   R  WRAE   W H   YGFR  R+ D A+  + + AERAI   R  + + FDV+GAFN+S H A+L  L ++GCPPGLFC +SSFL +RQC L +NG+SA++ L  GFPQG +  P  W  H++RV  ++E + GE
Sbjct:  101 EEPPYTEYEVRSVTGRARGHKAPGPDMICGQVLQALTEELLPHVTQLYNAGLALGYHPRPWKGDLEKAAPKADKKDYTVVKAYRLLSLTDELGKDQERLGVRRFMWRAENQGWIHPRQYGFRAGRSVDMAMGGIESAAERAISSRRALLLMVFDVEGAFNKSCHSALLEGLAQRGCPPGLFCQVSSFLSDRQCTLVINGYSATKRLTRGFPQGVIWSPPLWDVHDDRVLRHIEDIAGE 338          
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Match: A0A7S3Y0N8_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0N8_HETAK)

HSP 1 Score: 221 bits (562), Expect = 3.440e-63
Identity = 109/238 (45.80%), Postives = 150/238 (63.03%), Query Frame = 1
Query:    1 DDGPFTMFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVPVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNMNGFSASRLLRLGFPQGGVGPPIYWTTHNNRVAVYVEVVGGE 714
            ++ P+T +E+R    +  G+KAPGPDMI G+VL+   +E+  H+  + NA   LGY PR WK +   A  K  KKDYT++KAYRLL+L     K  E +   R  WRAE   W H   YGFR  R+ D A+  + + AERAI   R  + + FDV+GAFN+S H A+L  L ++GCPPGLFC +SSFL +RQC L +NG+SA++ L  GFPQG +  P  W  H++RV  ++E + GE
Sbjct:  227 EEPPYTEYEVRSVTGRARGHKAPGPDMICGQVLQALTEELLPHVTQLYNAGLALGYHPRPWKGDLEKAAPKADKKDYTVVKAYRLLSLTDELGKDQERLGVRRFMWRAENQGWIHPRQYGFRAGRSVDMAMGGIESAAERAISSRRALLLMVFDVEGAFNKSCHSALLEGLAQRGCPPGLFCQVSSFLSDRQCTLVINGYSATKRLTRGFPQGVIWSPPLWDVHDDRVLRHIEDIAGE 464          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1077.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DB43_HETAK5.270e-18696.99Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8X7_HETAK1.360e-15495.06Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DD44_HETAK9.630e-13147.41Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y2N9_HETAK4.730e-10386.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DEH0_HETAK5.390e-9896.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y2G0_HETAK1.330e-8492.31Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y6J6_HETAK3.170e-7443.73Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D502_HETAK5.800e-7450.63Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y0V7_HETAK1.230e-6445.80Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y0N8_HETAK3.440e-6345.80Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1077contigH-akashiwo_Contig1077:105520..106872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog225117.XP_009351357.1
PFAMsRVT_1
Model size1353
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-46
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size1335
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387069.7863371-UTR-H-akashiwo_Contig1077:105519..1055371681387069.7863371-UTR-H-akashiwo_Contig1077:105519..105537Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1077 105520..105537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387069.7975185-CDS-H-akashiwo_Contig1077:105537..1068721681387069.7975185-CDS-H-akashiwo_Contig1077:105537..106872Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1077 105538..106872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1077.3.1prot_H-akashiwo_Contig1077.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1077 105538..106872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1077.3.1

>prot_H-akashiwo_Contig1077.3.1 ID=prot_H-akashiwo_Contig1077.3.1|Name=mRNA_H-akashiwo_Contig1077.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=445bp
MFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVALHLASVTNACRDLGY
FPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKTLEGMITSRVSW
RAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVPVAVFFDVD
GAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNMNGFSASRLL
RLGFPQGGVGPPIYWTTHNNRVAVYVEVVGGEALFIGYADDNGFTVEGGP
DELGALVELAARVLVSVIKQCRPLKINFSKDPEKMKAMAFTTCRVGHRGK
DIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTK
KAKQLAVAMTSCARAKWGLGRRVVKQIYKEAVEPIMLNGVVAWAAALTKK
GAQGRLRSVQRLAALAMTGCFRTTSTPAALALAGLLPAEMAAGKV
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mRNA from alignment at H-akashiwo_Contig1077:105520..106872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1077.3.1 ID=mRNA_H-akashiwo_Contig1077.3.1|Name=mRNA_H-akashiwo_Contig1077.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-akashiwo_Contig1077:105520..106872+ (Heterosigma akashiwo CCMP452)
GACGACGGACCGTTCACCATGTTTGAGCTCCGCCGGGAAATCTTCCAGAG GGGCGGCTACAAGGCTCCCGGCCCTGATATGATCATCGGGCGGGTGCTCA AGGAGTGCATTGACGAGGTCGCGCTACATCTGGCCAGTGTGACCAACGCC TGCAGGGATCTCGGCTACTTCCCCCGCGGCTGGAAGGTGGAGGACGGGGT GGCCTGCGCCAAGCCGGGGAAGAAGGACTACACGCTGATGAAGGCGTACA GGCTGCTGGCTCTGCTCTGCGCCGCGAGCAAGACCCTAGAGGGTATGATA ACCTCGAGGGTGTCTTGGCGGGCGGAGCGCGGGAGCTGGTTCCACGAGCA CGCGTATGGGTTCCGCCCCGACAGGAACAAGGATGGCGCAGTGGAGGAGC TGGTAACCAGGGCGGAGCGAGCGATTCACCGCGGACGGGTGCCGGTGGCG GTCTTCTTCGACGTGGACGGGGCCTTCAACCAGTCCTGGCACCCAGCGGT ACTGACGGCTCTGCAGGAGAAGGGGTGCCCACCTGGCCTCTTCTGCCTCA TCAGCAGCTTCCTTCGGGAACGGCAGTGCAACCTGAACATGAACGGGTTC AGCGCCTCCAGGCTCCTGCGCCTGGGCTTTCCTCAAGGGGGAGTTGGTCC GCCCATCTACTGGACCACACATAACAACAGGGTGGCGGTGTATGTGGAGG TGGTGGGCGGTGAGGCTCTTTTCATCGGCTATGCAGACGACAACGGGTTC ACCGTGGAGGGGGGGCCCGACGAGCTCGGCGCCCTGGTGGAGCTGGCTGC CCGCGTACTTGTCTCCGTGATAAAACAATGTAGGCCACTGAAGATCAACT TCTCAAAGGACCCGGAGAAGATGAAGGCCATGGCCTTCACGACCTGCAGA GTTGGCCACAGGGGCAAGGACATCGTTGTCCCGGCCATCGTGCTGGACTG CCAGGACATGCCGGAATGGCATGGGCACTCCATCCCGGTCGCGGACGAGC TGACTTTCCTGGGGGTGATCCTGGACAGGAAGCTCACCTGGGCTAGCCAC ATCGAGGCCTGCACGAAGAAGGCTAAGCAGCTGGCGGTGGCAATGACGAG CTGTGCGCGGGCGAAGTGGGGACTGGGGCGCAGGGTGGTCAAACAGATCT ACAAGGAGGCGGTGGAGCCCATCATGCTCAATGGGGTAGTGGCATGGGCG GCCGCCCTGACCAAGAAGGGGGCACAGGGGAGGCTGCGTAGTGTACAGCG CCTGGCGGCCCTAGCCATGACCGGCTGCTTCCGGACGACCTCGACCCCAG CGGCACTGGCGCTAGCGGGCCTGCTACCGGCGGAGATGGCCGCTGGGAAG GTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1077:105520..106872+

>mRNA_H-akashiwo_Contig1077.3.1 ID=mRNA_H-akashiwo_Contig1077.3.1|Name=mRNA_H-akashiwo_Contig1077.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1335bp|location=Sequence derived from alignment at H-akashiwo_Contig1077:105520..106872+ (Heterosigma akashiwo CCMP452)
ATGTTTGAGCTCCGCCGGGAAATCTTCCAGAGGGGCGGCTACAAGGCTCC
CGGCCCTGATATGATCATCGGGCGGGTGCTCAAGGAGTGCATTGACGAGG
TCGCGCTACATCTGGCCAGTGTGACCAACGCCTGCAGGGATCTCGGCTAC
TTCCCCCGCGGCTGGAAGGTGGAGGACGGGGTGGCCTGCGCCAAGCCGGG
GAAGAAGGACTACACGCTGATGAAGGCGTACAGGCTGCTGGCTCTGCTCT
GCGCCGCGAGCAAGACCCTAGAGGGTATGATAACCTCGAGGGTGTCTTGG
CGGGCGGAGCGCGGGAGCTGGTTCCACGAGCACGCGTATGGGTTCCGCCC
CGACAGGAACAAGGATGGCGCAGTGGAGGAGCTGGTAACCAGGGCGGAGC
GAGCGATTCACCGCGGACGGGTGCCGGTGGCGGTCTTCTTCGACGTGGAC
GGGGCCTTCAACCAGTCCTGGCACCCAGCGGTACTGACGGCTCTGCAGGA
GAAGGGGTGCCCACCTGGCCTCTTCTGCCTCATCAGCAGCTTCCTTCGGG
AACGGCAGTGCAACCTGAACATGAACGGGTTCAGCGCCTCCAGGCTCCTG
CGCCTGGGCTTTCCTCAAGGGGGAGTTGGTCCGCCCATCTACTGGACCAC
ACATAACAACAGGGTGGCGGTGTATGTGGAGGTGGTGGGCGGTGAGGCTC
TTTTCATCGGCTATGCAGACGACAACGGGTTCACCGTGGAGGGGGGGCCC
GACGAGCTCGGCGCCCTGGTGGAGCTGGCTGCCCGCGTACTTGTCTCCGT
GATAAAACAATGTAGGCCACTGAAGATCAACTTCTCAAAGGACCCGGAGA
AGATGAAGGCCATGGCCTTCACGACCTGCAGAGTTGGCCACAGGGGCAAG
GACATCGTTGTCCCGGCCATCGTGCTGGACTGCCAGGACATGCCGGAATG
GCATGGGCACTCCATCCCGGTCGCGGACGAGCTGACTTTCCTGGGGGTGA
TCCTGGACAGGAAGCTCACCTGGGCTAGCCACATCGAGGCCTGCACGAAG
AAGGCTAAGCAGCTGGCGGTGGCAATGACGAGCTGTGCGCGGGCGAAGTG
GGGACTGGGGCGCAGGGTGGTCAAACAGATCTACAAGGAGGCGGTGGAGC
CCATCATGCTCAATGGGGTAGTGGCATGGGCGGCCGCCCTGACCAAGAAG
GGGGCACAGGGGAGGCTGCGTAGTGTACAGCGCCTGGCGGCCCTAGCCAT
GACCGGCTGCTTCCGGACGACCTCGACCCCAGCGGCACTGGCGCTAGCGG
GCCTGCTACCGGCGGAGATGGCCGCTGGGAAGGTG
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