mRNA_H-akashiwo_Contig107.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig107.15.1
Unique NamemRNA_H-akashiwo_Contig107.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig107.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig107contigH-akashiwo_Contig107:846456..847136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size681
Hectar predicted targeting categorysignal peptide
Exons1
Cds size600
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387068.196116-UTR-H-akashiwo_Contig107:846455..8464971681387068.196116-UTR-H-akashiwo_Contig107:846455..846497Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig107 846456..846497 +
1681387068.214558-UTR-H-akashiwo_Contig107:847097..8471361681387068.214558-UTR-H-akashiwo_Contig107:847097..847136Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig107 847098..847136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387068.2061348-CDS-H-akashiwo_Contig107:846497..8470971681387068.2061348-CDS-H-akashiwo_Contig107:846497..847097Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig107 846498..847097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig107.15.1prot_H-akashiwo_Contig107.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig107 846498..847097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig107.15.1

>prot_H-akashiwo_Contig107.15.1 ID=prot_H-akashiwo_Contig107.15.1|Name=mRNA_H-akashiwo_Contig107.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=200bp
MPRSRRSCCCLCLFAVIFLLLPAGNADSGLDSKAADLKSSYIDTVLQTKR
NQMDFAGELSKCFTAGEECSSHNECCSASCGDFEGTGLTVCSLLDESGAV
TDQEQRDRENEIERREREAEANAVREYLKGTKTGTSFLEVSGGDEGSQSI
SSRPRSWYTSPLFLSLAFVVSSFAAVIAITNSSHQTEYEQLNAAGFISL*
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mRNA from alignment at H-akashiwo_Contig107:846456..847136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig107.15.1 ID=mRNA_H-akashiwo_Contig107.15.1|Name=mRNA_H-akashiwo_Contig107.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=681bp|location=Sequence derived from alignment at H-akashiwo_Contig107:846456..847136+ (Heterosigma akashiwo CCMP452)
CTGCCATTCTCATTCTCGCAATCTTTCCTTGTCCGTCACGAAATGCCTCG
ATCTCGCAGGAGCTGCTGCTGTCTATGCCTTTTTGCAGTTATATTTCTGC
TTTTGCCAGCTGGAAATGCAGATTCGGGACTAGATAGCAAAGCTGCAGAT
CTCAAATCGTCGTATATTGACACAGTGCTCCAAACAAAACGAAATCAGAT
GGATTTCGCTGGGGAACTTTCTAAGTGTTTCACAGCTGGTGAAGAATGCA
GCTCTCATAATGAGTGTTGTTCAGCTAGCTGTGGGGATTTCGAAGGTACT
GGTTTGACGGTGTGTAGTTTGCTGGATGAATCGGGAGCTGTGACGGATCA
AGAACAAAGGGACAGGGAGAATGAAATAGAGCGGCGTGAGAGGGAGGCTG
AAGCCAATGCTGTCAGGGAGTATTTGAAGGGAACAAAGACTGGAACTTCT
TTTTTGGAAGTCAGTGGTGGCGATGAAGGTTCACAGAGCATATCTTCTCG
ACCAAGAAGCTGGTACACAAGCCCCCTCTTTCTCAGCCTTGCTTTTGTAG
TATCTAGTTTTGCAGCTGTGATAGCAATAACAAACAGTAGTCATCAAACA
GAGTACGAGCAGCTAAATGCAGCTGGCTTCATTTCGCTCTGAATCTATTT
GGTCTGTTAAATGATAACAAAATATAAATGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig107:846456..847136+

>mRNA_H-akashiwo_Contig107.15.1 ID=mRNA_H-akashiwo_Contig107.15.1|Name=mRNA_H-akashiwo_Contig107.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=600bp|location=Sequence derived from alignment at H-akashiwo_Contig107:846456..847136+ (Heterosigma akashiwo CCMP452)
ATGCCTCGATCTCGCAGGAGCTGCTGCTGTCTATGCCTTTTTGCAGTTAT
ATTTCTGCTTTTGCCAGCTGGAAATGCAGATTCGGGACTAGATAGCAAAG
CTGCAGATCTCAAATCGTCGTATATTGACACAGTGCTCCAAACAAAACGA
AATCAGATGGATTTCGCTGGGGAACTTTCTAAGTGTTTCACAGCTGGTGA
AGAATGCAGCTCTCATAATGAGTGTTGTTCAGCTAGCTGTGGGGATTTCG
AAGGTACTGGTTTGACGGTGTGTAGTTTGCTGGATGAATCGGGAGCTGTG
ACGGATCAAGAACAAAGGGACAGGGAGAATGAAATAGAGCGGCGTGAGAG
GGAGGCTGAAGCCAATGCTGTCAGGGAGTATTTGAAGGGAACAAAGACTG
GAACTTCTTTTTTGGAAGTCAGTGGTGGCGATGAAGGTTCACAGAGCATA
TCTTCTCGACCAAGAAGCTGGTACACAAGCCCCCTCTTTCTCAGCCTTGC
TTTTGTAGTATCTAGTTTTGCAGCTGTGATAGCAATAACAAACAGTAGTC
ATCAAACAGAGTACGAGCAGCTAAATGCAGCTGGCTTCATTTCGCTCTGA
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