mRNA_H-akashiwo_Contig1057.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1057.7.1
Unique NamemRNA_H-akashiwo_Contig1057.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: UPI0005F5870B (uncharacterized protein LOC105568001 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F5870B)

HSP 1 Score: 99.0 bits (245), Expect = 9.160e-24
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA      A+L   EL HL +T   NGY
Sbjct:   17 FLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 117
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BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: A0A6J1QJD7_9HYME (uncharacterized protein LOC112461499 n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1QJD7_9HYME)

HSP 1 Score: 100 bits (249), Expect = 3.220e-23
Identity = 53/102 (51.96%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  LN  HP I++    E+N Q+PFLDVLV RN+DG+ +  VYRKPTH+DRYLH TS+H    K S I +LVYRA     + SL   EL HL +    NGY
Sbjct:   53 FLAFLNSQHPNIQFTMEVEQNSQIPFLDVLVRRNDDGTLSHQVYRKPTHTDRYLHATSHHHPSQKNSVISSLVYRALTISESTSLN-GELEHLNQALTKNGY 153
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: UPI0010FB9FDF (uncharacterized protein LOC107292515 n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI0010FB9FDF)

HSP 1 Score: 101 bits (252), Expect = 6.230e-23
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            F+  LN I+P IK+    E  G L FLDV+V R  DGS +T VYRKPTH+DR LH+ SNHPV  K+S I+TL  R + +CSTA  K  E  +L +    NGY
Sbjct:   28 FMGILNSIYPDIKFTMEEEARGSLAFLDVMVQRLPDGSVSTKVYRKPTHTDRILHYNSNHPVSHKVSCIKTLFQRIHTHCSTARAKFEERRYLHQVCRLNGY 129
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: UPI0005F54FC3 (uncharacterized protein LOC105562922 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F54FC3)

HSP 1 Score: 98.6 bits (244), Expect = 8.580e-23
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  +N  HP I++    E+N Q+PFLDVL+ RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA      A+L   EL HL +T   NGY
Sbjct:   40 FLTFINSQHPNIQFTMETEQNSQIPFLDVLIRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 140
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: UPI0005F425C1 (uncharacterized protein LOC105566767 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F425C1)

HSP 1 Score: 98.6 bits (244), Expect = 1.070e-22
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA      A+L   EL HL +T   NGY
Sbjct:   53 FLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSIISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 153
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: A0A401QI04_SCYTO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI04_SCYTO)

HSP 1 Score: 100 bits (248), Expect = 1.870e-22
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  LN IHP IK+    E+NGQ+PFLDVLV RN +G+ + TVYRK TH+DRYLH  S+H  K K   + TL +R+        L+  EL HL++  A NGY
Sbjct:  329 FLGHLNSIHPNIKFTMEIEENGQIPFLDVLVKRNAEGTLSHTVYRKTTHTDRYLHAESHHHPKQKRGILHTLAHRSKTISDKQHLR-EELQHLQQALASNGY 429
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: UPI0005F52B34 (uncharacterized protein LOC105562568 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F52B34)

HSP 1 Score: 95.9 bits (237), Expect = 2.020e-22
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+    VYRKPTH+DRYLH  S+H    K S I +LV+RA      A+L   +L HL +    NGY
Sbjct:   53 FLTFINSQHPNIQFTIEIEQNSQIPFLDVLVCRNEDGTLGHNVYRKPTHTDRYLHANSHHHPAQKNSVINSLVHRALSISEPAALD-GKLNHLHRALTRNGY 153
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: UPI0005F49CD5 (uncharacterized protein LOC105556100 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F49CD5)

HSP 1 Score: 99.0 bits (245), Expect = 5.250e-22
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA      A+L   EL HL +T   NGY
Sbjct:  354 FLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 454
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: A0A654GVG9_9CEST (Reverse transcriptase domain-containing protein n=3 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654GVG9_9CEST)

HSP 1 Score: 97.8 bits (242), Expect = 6.390e-22
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            F + LN I P I++    EK+ QLPFLDVLV R EDG   TTVYRK T++ R L + SNHP+  K S +RTL  R   +C+  + K AE   LRK FA NGY
Sbjct:  117 FTQHLNSIFPDIQFTMEEEKDCQLPFLDVLVQRKEDGGLKTTVYRKATNTSRILSFLSNHPLSHKRSCVRTLYRRVETHCTEPADKKAEAQFLRKLFAMNGY 218
[Close]
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Match: UPI0005F50163 (uncharacterized protein LOC105570918 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F50163)

HSP 1 Score: 97.4 bits (241), Expect = 6.450e-22
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:    1 FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADNGY 306
            FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRY H  S+H    K S I +LV+RA      A+L   EL HL +T   NGY
Sbjct:  239 FLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYFHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1057.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0005F5870B9.160e-2450.98uncharacterized protein LOC105568001 n=1 Tax=Volle... [more]
A0A6J1QJD7_9HYME3.220e-2351.96uncharacterized protein LOC112461499 n=1 Tax=Temno... [more]
UPI0010FB9FDF6.230e-2350.98uncharacterized protein LOC107292515 n=1 Tax=Proto... [more]
UPI0005F54FC38.580e-2350.00uncharacterized protein LOC105562922 n=1 Tax=Volle... [more]
UPI0005F425C11.070e-2250.98uncharacterized protein LOC105566767 n=2 Tax=Volle... [more]
A0A401QI04_SCYTO1.870e-2250.00Reverse transcriptase domain-containing protein (F... [more]
UPI0005F52B342.020e-2249.02uncharacterized protein LOC105562568 n=1 Tax=Volle... [more]
UPI0005F49CD55.250e-2250.98uncharacterized protein LOC105556100 n=1 Tax=Volle... [more]
A0A654GVG9_9CEST6.390e-2250.98Reverse transcriptase domain-containing protein n=... [more]
UPI0005F501636.450e-2250.00uncharacterized protein LOC105570918 n=2 Tax=Volle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1057contigH-akashiwo_Contig1057:97043..97348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size306
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.33e-21
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.1039119-CDS-H-akashiwo_Contig1057:97042..973481681387065.1039119-CDS-H-akashiwo_Contig1057:97042..97348Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1057 97043..97348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1057.7.1prot_H-akashiwo_Contig1057.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1057 97043..97348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1057.7.1

>prot_H-akashiwo_Contig1057.7.1 ID=prot_H-akashiwo_Contig1057.7.1|Name=mRNA_H-akashiwo_Contig1057.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp
FLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHS
DRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTASLKMAELTHLRKTFADN
GY
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mRNA from alignment at H-akashiwo_Contig1057:97043..97348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1057.7.1 ID=mRNA_H-akashiwo_Contig1057.7.1|Name=mRNA_H-akashiwo_Contig1057.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig1057:97043..97348+ (Heterosigma akashiwo CCMP452)
TTTTTGAAGAAGCTCAATGGCATACACCCGAAGATCAAGTGGGAGGCAGT
GTTTGAGAAGAATGGGCAGTTGCCTTTTCTGGACGTGTTGGTGGTGAGAA
ATGAGGATGGCTCTTTTACTACCACGGTCTACAGGAAACCCACGCACTCT
GACAGGTATCTCCATTGGACTTCCAACCATCCTGTGAAGGACAAACTTTC
TGGTATTAGAACTTTGGTCTATCGTGCTAACCACTACTGCTCTACGGCGA
GCCTGAAGATGGCGGAGTTGACCCATTTGAGGAAGACTTTTGCTGACAAC
GGGTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1057:97043..97348+

>mRNA_H-akashiwo_Contig1057.7.1 ID=mRNA_H-akashiwo_Contig1057.7.1|Name=mRNA_H-akashiwo_Contig1057.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig1057:97043..97348+ (Heterosigma akashiwo CCMP452)
TTTTTGAAGAAGCTCAATGGCATACACCCGAAGATCAAGTGGGAGGCAGT
GTTTGAGAAGAATGGGCAGTTGCCTTTTCTGGACGTGTTGGTGGTGAGAA
ATGAGGATGGCTCTTTTACTACCACGGTCTACAGGAAACCCACGCACTCT
GACAGGTATCTCCATTGGACTTCCAACCATCCTGTGAAGGACAAACTTTC
TGGTATTAGAACTTTGGTCTATCGTGCTAACCACTACTGCTCTACGGCGA
GCCTGAAGATGGCGGAGTTGACCCATTTGAGGAAGACTTTTGCTGACAAC
GGGTAT
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