mRNA_H-akashiwo_Contig1041.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1041.1.1
Unique NamemRNA_H-akashiwo_Contig1041.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1041.1.1 vs. uniprot
Match: A0A7S3XXI1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXI1_HETAK)

HSP 1 Score: 142 bits (357), Expect = 7.010e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MLGLAGLGSLAVPGAGPNPANVLQNKALTKPYRDIYIGNLPEGTTGPQLQEALCALLAQMGLVNGPGEP 207
            MLGLAGLGSLAVPGAGPNPANVLQNKALTKPYRDIYIGNLPEGTTGPQLQEALCALLAQMGLVNGPGEP
Sbjct:  148 MLGLAGLGSLAVPGAGPNPANVLQNKALTKPYRDIYIGNLPEGTTGPQLQEALCALLAQMGLVNGPGEP 216
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BLAST of mRNA_H-akashiwo_Contig1041.1.1 vs. uniprot
Match: A0A6V1RKZ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RKZ3_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.610e-9
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:    1 MLGLAGLGSLAVPGAGPNPANVLQNKALTK 90
            MLGLAGLGSLAVPGAGPNPANVLQNKALTK
Sbjct:  148 MLGLAGLGSLAVPGAGPNPANVLQNKALTK 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XXI1_HETAK7.010e-40100.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A6V1RKZ3_HETAK1.610e-9100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1041contigH-akashiwo_Contig1041:12997..16509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra73811
PFAMsRRM_1
Model size207
Max annot lvl4776|Peronosporales
KEGG koko:K12837
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.64e-07
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota,3QDCR@4776|Peronosporales
DescriptionRNA recognition motif
Cds size207
COG categoryA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.26682-CDS-H-akashiwo_Contig1041:12996..130261681387061.26682-CDS-H-akashiwo_Contig1041:12996..13026Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1041 12997..13026 -
1681387061.2769382-CDS-H-akashiwo_Contig1041:13581..136681681387061.2769382-CDS-H-akashiwo_Contig1041:13581..13668Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1041 13582..13668 -
1681387061.2875855-CDS-H-akashiwo_Contig1041:16419..165091681387061.2875855-CDS-H-akashiwo_Contig1041:16419..16509Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1041 16420..16509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1041.1.1prot_H-akashiwo_Contig1041.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1041 12997..16509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1041.1.1

>prot_H-akashiwo_Contig1041.1.1 ID=prot_H-akashiwo_Contig1041.1.1|Name=mRNA_H-akashiwo_Contig1041.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=69bp
MLGLAGLGSLAVPGAGPNPANVLQNKALTKPYRDIYIGNLPEGTTGPQLQ
EALCALLAQMGLVNGPGEP
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mRNA from alignment at H-akashiwo_Contig1041:12997..16509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1041.1.1 ID=mRNA_H-akashiwo_Contig1041.1.1|Name=mRNA_H-akashiwo_Contig1041.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3513bp|location=Sequence derived from alignment at H-akashiwo_Contig1041:12997..16509- (Heterosigma akashiwo CCMP452)
ATGCTGGGGCTGGCCGGCCTGGGCTCGCTGGCCGTGCCCGGGGCGGGCCC
CAACCCGGCCAACGTGCTCCAGAACAAGGCCCTCACCAAGGTGGGGGGCC
GCCCGACGACCCCCCCGGCCGGGCCCGGGGCGGCGGGCTCCGCCCCCCTG
CGTTGCAGCACTTTCGGTGGAAAATTTGCCTGCTGTTATATTATATGCAC
ATTTTTTTCTTTTTTTCTGTCTACGTAGTACCATCATGCTCTTCATGAGA
TGCGATGCGGTTCGTCGCCAGTTGCTACCTCTACCCATTATTGTCCATGC
GTGTGCAGTTGTCTTCTCAGATGAAGGTATCCTCCTTGTATCATGCACTG
CTATGTACTGGAGAGTGGGATGCTCAAAAGATCGTTCCATATTTCTGGGA
CTCTAGCTCTATGGCATCTTTCGAAACTTCAGTTAGCTATACAGCAAGTC
GAGCTGACTTCAAGGTGTTGGGGCAGGTTGGTCATTGAACTCTGGTGTTC
TCTGCCCTCTCTTCCCAGTGCCCCTCCGCCCTTGCCCTCTTCCCCCAGCC
CACCGGTTTCTCCACGGCTCTCGGGCAGGGGCTTGGGGCCTTCTGAACTG
CCCTGCATCAACACCCTCCTTCTTGTTACGAGAGAGGCTCGGAGAGCAAG
GCGCTGTGCTGGTGAGGGACTGTTGAGCTAGAGTACCCGACCAAATATCA
TCTCGGTCACCATTGCTTTTTAATTTTTTGACGCTGAAGGATGCTTCTTT
GGAGAGATAAATTCAGCTGTGTCTCTTTCTTATACAGAGTGTCGTTTCTC
TTTCTTCTTTTCAAACCCTCCTGGTTGGTGTGTTATGTAACATATATTTT
GACGTTGAAGGATGCTTCTTTGGAGAGGAAAATTCAGCAGTGTCTCTTTC
TTCTTTTTAAACCTTCCTGGTTGGTGTGTTATGTAATATATAGTAGAGTT
CTGGAGGAATGCATGAGGAAAAGGGAGGGGAGAACACCACAGCACCTACA
ACAACTGAAGCATAGAGCTGAACTTCACACGGTCCTTGCAAAAGACAAGA
GCTTGTTGTACAGGGTGAGGCAATCAGGAATATGGAAGAACACTCAAAAT
CATGGTATTCATCCTGTGAACAAAAACTCAAATATAGAACATATAATTCT
TGCAGATTCAGAGAGAAGCAGCTTCAAACTCAGATGAAGATGGGTGCGGG
CGGCGGCAGCAGTGGATAAGTTCTGATCAATATCACTTCATCATCATACA
TGTCAAAATGAAGCTAAAACAACAAAAAATACATGAGAGCAGATATTTCA
TTTTGTCATTTGTCTTAAGGATGGAACGAGGCGGGTTGTTAAGTGAAGCA
AAAGTCAGAATTCTAGATAATTGTGAGCATGGGGCCTTTTAGTCGAGTGC
AAGTATAATTTGAATACTACCACACCATACCCCAAGTCTTTGGCCATCTG
TCATTTAACGTAATACACCAGGGAACGGCGGACCTGTTCTGGATGGGATG
CCGAAAGTCTTGCGGAGCTTGATTCAATGTCCAGGGGCCCTCCAACTGGG
AAAGCAAGGCTGTTCCTGCCATTCATCAAACTGGAGCATTTACATTACTT
GATGCTGGATTAGGTTGTGTAACACGTACCACCAAACAAGCTGTTCTTTT
GTTTTGATGCTATCTCCCAGGCGATTGGCGGTGGATAAACGATAAATCTC
CATGTTCCTCAAGGTGGAAGATTTTAAGTAGTGCAGCAACTGAAACTAAA
CTTGTGTAGTAGTATACATTCAAGACATAAATGTATTTTGGCTCTCACAA
GAAGAGTCTTTGTTTTGGATTAGGCACTGTTGTCTATCGATCACGCACGC
CTGTATTTTTCTTCACCTTTTCACGATGATAATACAGATAGAGCAAGGGT
CTTTGTTGCTGGTGTTTGCGCCCGCCTAAAAGCAACCTTAACATAGCCAA
AAGGTGCCACAGGGGTCTGCCTTCATTTTTCGCTTTTGTGTTGAGCCTGA
TGCCCCATTTTCAATTGTAGTGAGAGTAGCTGTTTTGGTTCACCTGCTCG
TCCCAACATCATCTGCTGGCTGTCTGAACACTCAAGGGAGGGAGGCGTTG
GTTTTCAAAAGGCCGTACCGACACATACGACACGCGCCAGGGGGCAACAC
CACTGCCAGCCGGGCGTGCTGGGGCCGCCGCGGCTTGCCAAAGAAGTTGC
GACTGCGCCCTCCCCCTCCTGGGGGGCGCAAGGTAGAGGGGGGCCCCGGG
GCAACCCAGGGACGCTCGGGGGCCCAACAGCTATTATAGGCCCTGCTAAT
CTAGATGCACTAAACTAAGTTTTAAATAACAAGATGTATATTTGACAAAG
TGCCCTGCATCCCAGGTTATTTCAACTATAAGTTATTTAACCTAGATGCC
AGGGCACCTTGCTTGTTCTAGACGCGAATCGTATTTTTCATGCCCTCAAA
GAGGGAGGAAGAACAAGCAAGGTGCCCTCTGCATGCCATGCGATGTTGCA
CCTCTTTGAGGGCATAAAAAATACGATGAAGAAGACCTGGTGCTGCACTT
TCACGACATCGCATGTGGCACCTCATGACGCTCTTTATCATATATAATAC
GTGTGTAAAATGTATGTATATATGTATACATAAATACTACATTAATATCA
CTCCAAATACTAGTGCCAATTCGATATGCAAAATCCAGGCCAACACAAAC
TTAACTGAGATGCCGGGCGCCATGAGTCAATAACCGTGCTGAGCTCCCCC
CCCTCCCTCCCCCCCGCCGCCCCCCCCTTCCCCCCCCCTCACCCCCCTTG
CCGCCGCCGCCGCCAGCGGCCAAGCCCCCCGCCCGCTTCAGCCCTACCGG
GACATCTACATCGGCAACCTCCCCGAGGGGACCACGGGGCCGCAGCTCCA
GGAGGCGCTCTGCGCGCTGCTGGCCCAGGTGCGAGGGCGGGTGGGCGGGC
CGGGGGGGGGCTGGCCGGTCGGTGCCCGCGGGAAAGTTGTTCTTGCTGAT
TCGATCTCACTGGAAGGTTCAGAGTTGGGTTGTGTGCAAGCAGAAGGAGA
CTTCGGCGCCGCTGCTGACCCGGCGCCGCTGTACCATGTGATTCGACTGT
GGCCAGACACTGTGCGAACATAAACCCAGCAGCGGGAGGACTGAGACTGG
TGACGGTGACGATGCCTATAGTTTTGTGGCACTCCGCCTGCCCCCGCGCC
ACACACATAACACCAGTTGCTGGGACTGGCACCTGGCCCTGCTAGTCGTG
CACTCTTTTTTAATGGCATGTTGTTTTTTGCTGTATACTATAAAGGACGC
TCTGGTATCCCTGAGTATACAAAATCATTATCAAAGTGATGAATGACCAA
TGTCGCAGACCAATCAAATAATATTTCAGCAATGGAACCATCCGGTCAAA
ATCCAACTGGGCCCGGTGAACAACCGAAGCAGCCTGTCCCAGCCACCGGG
CTCGCCCGCCGTCGGTTTCTCGTCCGCCCCCAGATGGGCCTGGTGAACGG
GCCGGGCGAGCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1041:12997..16509-

>mRNA_H-akashiwo_Contig1041.1.1 ID=mRNA_H-akashiwo_Contig1041.1.1|Name=mRNA_H-akashiwo_Contig1041.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=207bp|location=Sequence derived from alignment at H-akashiwo_Contig1041:12997..16509- (Heterosigma akashiwo CCMP452)
ATGCTGGGGCTGGCCGGCCTGGGCTCGCTGGCCGTGCCCGGGGCGGGCCC
CAACCCGGCCAACGTGCTCCAGAACAAGGCCCTCACCAAGCCCTACCGGG
ACATCTACATCGGCAACCTCCCCGAGGGGACCACGGGGCCGCAGCTCCAG
GAGGCGCTCTGCGCGCTGCTGGCCCAGATGGGCCTGGTGAACGGGCCGGG
CGAGCCG
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