mRNA_H-akashiwo_Contig104.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.7.1
Unique NamemRNA_H-akashiwo_Contig104.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig104.7.1 vs. uniprot
Match: A0A7S3XUP7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUP7_HETAK)

HSP 1 Score: 152 bits (384), Expect = 3.040e-43
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:    1 LSEIQKFRLRQAERDRQLEKERRDKLEKRIRASLEQQKREEAATEIRLQQEVAELEREEEKDRLREKVLAEIVDAKVEELMAMKKKLKAAGLDASDDE 294
            LSEIQKFRLRQAERDRQLEK  RDKLEKRIRASLEQQKREEAATEIRLQQEVAELEREEEKDRLREKVLAEIVDAKVEELMAMKKKLKAAGLDASDDE
Sbjct:   84 LSEIQKFRLRQAERDRQLEKXXRDKLEKRIRASLEQQKREEAATEIRLQQEVAELEREEEKDRLREKVLAEIVDAKVEELMAMKKKLKAAGLDASDDE 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XUP7_HETAK3.040e-4397.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:350322..351852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons4
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.5343065-CDS-H-akashiwo_Contig104:350323..3504401681387059.5343065-CDS-H-akashiwo_Contig104:350323..350440Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 350324..350440 -
1681387059.542147-CDS-H-akashiwo_Contig104:350797..3508871681387059.542147-CDS-H-akashiwo_Contig104:350797..350887Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 350798..350887 -
1681387059.5496845-CDS-H-akashiwo_Contig104:351143..3512211681387059.5496845-CDS-H-akashiwo_Contig104:351143..351221Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 351144..351221 -
1681387059.5574265-CDS-H-akashiwo_Contig104:351819..3518521681387059.5574265-CDS-H-akashiwo_Contig104:351819..351852Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 351820..351852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.7.1prot_H-akashiwo_Contig104.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 350324..351852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.7.1

>prot_H-akashiwo_Contig104.7.1 ID=prot_H-akashiwo_Contig104.7.1|Name=mRNA_H-akashiwo_Contig104.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=106bp
LSEIQKFRLRQAERDRQLEKERRDKLEKRIRASLEQQKREEAATEIRLQQ
EVAELEREEEKDRLREKVLAEIVDAKVEELMAMKKKLKAAGLDASDDEDE
RRASKK
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mRNA from alignment at H-akashiwo_Contig104:350322..351852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.7.1 ID=mRNA_H-akashiwo_Contig104.7.1|Name=mRNA_H-akashiwo_Contig104.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1531bp|location=Sequence derived from alignment at H-akashiwo_Contig104:350322..351852- (Heterosigma akashiwo CCMP452)
CTCAGCGAGATCCAGAAGTTCCGCCTGCGTCAGGTGGGGGGGGCGCGGCG
CGCGCGCGTATTCCGGCTCGGTCTGTGTAGAGAGCCAGGCGCCCCTGTTG
TGCCGGGCGCGATGTTACAGGCCGATGCGGCTGGAGTTCCAGGGGGCTCC
AGCTCCGGTACCGCGTGTATAGCCAGGATCTCTGGTTGCCCTCGGATCAA
TCACAAAAAAAAAGAAGGAACAAAGTCTGCTGCCACATGTTGATACGGAG
TGAGGAGGGGGGGTTGCTTCGGTTGCACTTCGCTTCGGAGGCAGCGATGC
CCATGCCACACTCCATTCCCCGAAGCGTGCGCTCTGCGACCGGTGGGACG
AGGATCCCCCCTTGCCGAGGGGGGGGGGGAGGGGTGGTGTCGGGTTGGGG
AGGTCCCGCACTCCTGAGCTGCAAGCTCCTCTCTCGGCACGCTCACGCTC
ACCCGGTCATACATCTACTAATGAACGAGCCCTTGATGTAAAGTGGGAAA
GTGCCTTTAAATGTATTACATATATATATATATGTAGTGCCTACTATGTA
GGAGCTACCTAAAGGAGGAAAGCTTTCTGAGCAGTGCGGCCAGCTCAGAG
CACTCGAAAAAATCATCACACCTTCACCCAGGCGGAGCGCGACCGTCAGC
TGGAGAAGGAGCGCCGGGACAAGCTTGAGAAACGCATCCGTGCCTCGCTG
GAGCAGCAGGTACACAGGCACAAGCCCCCCCCTTCTTGTCCCTGCTCCTG
TGCGCCTCTCACGTGTGTTGTGGACTCGAAAACATGGGGTGTGGAAGAAG
ACATGAGGCTTGTTTCCCTCTTGCACAGGGATAGTTCTCTTTTCTTTGCC
AGCACCAGCACCGCGGCTGGCCCTTACAATCAAAGACAAAGACGGAAAAG
CGAGGCCAGCCCCCGCCCGCCCCCGCCCCGCCCGCCCCCGGCTCTGCGAT
CCCTTGCGCCCCCAGAAGCGGGAGGAGGCGGCGACGGAGATCCGCCTGCA
GCAGGAAGTGGCCGAGCTCGAGCGCGAGGAGGAAAAGGACCGCCTGCGGG
AGAAGGCGCGCGCCCCCTCTCCTTCTGTGCCGTGTTGTCTTTTATTTGTT
CAATACTTTTTGTTTGTACGTTCATACAAGTGGTGCATATATGTTGTACA
CTTGATAATGAAATCATGCTGAAGAATCGGCGAATGAAACAAAGGAGCAT
TATCTCAGTCTCTTAAAAAGGTTACGATGTACGTTTCAGGTTTCCCCTTC
ATCAGGTAAGATCACAAAGCTATCTCAGAAGAAATCTCATCTCCGAAGAA
ATGAGCAAAGGACTTTTCTTTTATTTTTGTTTGTACTCTATTCTTCTTTT
AGACCAGATAATGCCATCCGCTCTTTTTTCATTGGCTTTGCACGGACCAT
GTATAACCACAGGTTCTGGCCGAAATAGTGGACGCCAAAGTGGAAGAGCT
GATGGCAATGAAGAAAAAGCTCAAGGCCGCGGGTCTAGACGCCAGCGACG
ACGAGGATGAGCGCCGGGCGTCCAAGAAAGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig104:350322..351852-

>mRNA_H-akashiwo_Contig104.7.1 ID=mRNA_H-akashiwo_Contig104.7.1|Name=mRNA_H-akashiwo_Contig104.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=318bp|location=Sequence derived from alignment at H-akashiwo_Contig104:350322..351852- (Heterosigma akashiwo CCMP452)
CTCAGCGAGATCCAGAAGTTCCGCCTGCGTCAGGCGGAGCGCGACCGTCA
GCTGGAGAAGGAGCGCCGGGACAAGCTTGAGAAACGCATCCGTGCCTCGC
TGGAGCAGCAGAAGCGGGAGGAGGCGGCGACGGAGATCCGCCTGCAGCAG
GAAGTGGCCGAGCTCGAGCGCGAGGAGGAAAAGGACCGCCTGCGGGAGAA
GGTTCTGGCCGAAATAGTGGACGCCAAAGTGGAAGAGCTGATGGCAATGA
AGAAAAAGCTCAAGGCCGCGGGTCTAGACGCCAGCGACGACGAGGATGAG
CGCCGGGCGTCCAAGAAA
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