mRNA_H-akashiwo_Contig104.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.18.1
Unique NamemRNA_H-akashiwo_Contig104.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: A0A7S4D974_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D974_HETAK)

HSP 1 Score: 179 bits (454), Expect = 1.070e-54
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 2
Query:    2 LLEGDVMPPFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGYSNTGANPAAKMLVGDLLFGKTVTVH 271
            LLEGDVMPPFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGYSNTGANPAAKMLVGDLLFGKTVTVH
Sbjct:  180 LLEGDVMPPFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGYSNTGANPAAKMLVGDLLFGKTVTVH 269          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: A0A433XM38_9HYPH (GNAT family N-acetyltransferase n=1 Tax=Arsenicitalea aurantiaca TaxID=1783274 RepID=A0A433XM38_9HYPH)

HSP 1 Score: 54.3 bits (129), Expect = 4.060e-7
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 2
Query:   29 FIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGYS 199
            FI  L V+ DYRR G+A AL+AE   A  +RG + ++L+VE +N VA+ LY+  G++
Sbjct:   94 FIRELAVHADYRRLGLASALLAEAFQAFSARGVDQVALRVEEENAVARHLYDDIGFA 150          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: A0A1Q2U108_9SYNE (Acetyltransferase, GNAT family n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1Q2U108_9SYNE)

HSP 1 Score: 54.3 bits (129), Expect = 7.920e-7
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 2
Query:   26 PFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGY 196
            P+IA L VN DYRR GIA+ L+A CE+      Y +++L V   N  AK LY S GY
Sbjct:  117 PYIANLAVNPDYRRLGIARKLLARCETQGRYWNYSSVALHVLENNEAAKQLYLSCGY 173          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: A0A7S0GA21_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GA21_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.250e-6
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 2
Query:   26 PFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGY 196
            P+++ L V+ ++RRKGIA ALI+ CE  V S G   L L+VE KN  A S+Y   GY
Sbjct:   44 PYLSDLVVDINWRRKGIANALISRCEDKVKSYGSNDLYLRVEFKNNAAISMYGKLGY 100          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: K0Z2N7_9ACTO (N-acetyltransferase domain-containing protein n=2 Tax=Schaalia turicensis TaxID=131111 RepID=K0Z2N7_9ACTO)

HSP 1 Score: 52.8 bits (125), Expect = 1.870e-6
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 2
Query:   26 PFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGYSN 202
            PF+  L V  +YRRKGIA ALIAE        G++ LSL ++S+++ A SLY++ G+++
Sbjct:  103 PFVVDLVVAPEYRRKGIATALIAEVARRCQDWGFDGLSLTIDSRHMGAASLYDALGFTD 161          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: J1HLF2_9ACTO (FR47-like protein n=4 Tax=Schaalia georgiae TaxID=52768 RepID=J1HLF2_9ACTO)

HSP 1 Score: 52.4 bits (124), Expect = 2.180e-6
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 2
Query:   26 PFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGYSN 202
            PF+  L V  +YRR+GIA AL+AE        G+++LSL+++S++  AK LY   G+ +
Sbjct:   91 PFVVDLMVAPEYRRRGIATALVAEAARRCAEWGFDSLSLRIDSRHTGAKELYSVLGFDH 149          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: A0A7K0K8T7_9ACTO (GNAT family N-acetyltransferase n=2 Tax=Schaalia hyovaginalis TaxID=29316 RepID=A0A7K0K8T7_9ACTO)

HSP 1 Score: 52.0 bits (123), Expect = 3.660e-6
Identity = 22/61 (36.07%), Postives = 39/61 (63.93%), Query Frame = 2
Query:   26 PFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGYSNTG 208
            PF+  L V+ +YRR+GIA AL+ E        GY++L+L++++++  A  LY+  G+ + G
Sbjct:  103 PFVVDLIVDPEYRRRGIATALVGEIARRCKDWGYDSLALRIDARHAGAAELYDDLGFEDVG 163          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: B1XNS6_SYNP2 (Acetyltransferase, GNAT family n=7 Tax=unclassified Synechococcus TaxID=2626047 RepID=B1XNS6_SYNP2)

HSP 1 Score: 52.0 bits (123), Expect = 4.750e-6
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 2
Query:   26 PFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGY 196
            P+I+ L VN  YRR GIA+ L+A CE+ V    Y +++L V   N  AK LY S GY
Sbjct:   99 PYISNLAVNPQYRRLGIARKLLARCETQVRYWHYGSVALHVLENNEAAKQLYLSCGY 155          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: A0A7J3T2K8_9ARCH (GNAT family N-acetyltransferase n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J3T2K8_9ARCH)

HSP 1 Score: 50.4 bits (119), Expect = 1.030e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 2
Query:    2 LLEGDVMPPFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGY 196
            ++  D+   +I  L V+  +RR+G+AKALI ECE  + + G +     V+  NV +K L++S GY
Sbjct:   61 VMSSDLRRGWINRLAVDPSFRRRGVAKALILECERVLRTHGLKLFCALVDDANVASKKLFKSCGY 125          
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Match: A0A7S3S007_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S007_9SPIT)

HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 2
Query:   26 PFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVAKSLYESNGY 196
            P++A L V ++YRRKGIA+ L+ E E+   S GY  L L+V + N  A   Y   GY
Sbjct:  148 PYVASLAVERNYRRKGIARKLLREAEAIAQSWGYRELLLEVSAFNNAAIKFYSRGGY 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D974_HETAK1.070e-54100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A433XM38_9HYPH4.060e-745.61GNAT family N-acetyltransferase n=1 Tax=Arsenicita... [more]
A0A1Q2U108_9SYNE7.920e-749.12Acetyltransferase, GNAT family n=3 Tax=unclassifie... [more]
A0A7S0GA21_9STRA1.250e-649.12Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0Z2N7_9ACTO1.870e-644.07N-acetyltransferase domain-containing protein n=2 ... [more]
J1HLF2_9ACTO2.180e-640.68FR47-like protein n=4 Tax=Schaalia georgiae TaxID=... [more]
A0A7K0K8T7_9ACTO3.660e-636.07GNAT family N-acetyltransferase n=2 Tax=Schaalia h... [more]
B1XNS6_SYNP24.750e-647.37Acetyltransferase, GNAT family n=7 Tax=unclassifie... [more]
A0A7J3T2K8_9ARCH1.030e-536.92GNAT family N-acetyltransferase n=1 Tax=Candidatus... [more]
A0A7S3S007_9SPIT1.140e-543.86Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:700277..700547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog102232.GLO73106DRAFT_00035550
PFAMsAcetyltransf_1
Model size272
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.22e-09
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,1G5GJ@1117|Cyanobacteria
DescriptionPFAM Acetyltransferase (GNAT) family
Cds size252
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387060.057726-UTR-H-akashiwo_Contig104:700276..7002951681387060.057726-UTR-H-akashiwo_Contig104:700276..700295Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig104 700277..700295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387060.0669029-CDS-H-akashiwo_Contig104:700295..7005471681387060.0669029-CDS-H-akashiwo_Contig104:700295..700547Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 700296..700547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.18.1prot_H-akashiwo_Contig104.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 700296..700547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.18.1

>prot_H-akashiwo_Contig104.18.1 ID=prot_H-akashiwo_Contig104.18.1|Name=mRNA_H-akashiwo_Contig104.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=84bp
MPPFIAGLCVNKDYRRKGIAKALIAECESAVLSRGYETLSLKVESKNVVA
KSLYESNGYSNTGANPAAKMLVGDLLFGKTVTVH
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mRNA from alignment at H-akashiwo_Contig104:700277..700547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.18.1 ID=mRNA_H-akashiwo_Contig104.18.1|Name=mRNA_H-akashiwo_Contig104.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=271bp|location=Sequence derived from alignment at H-akashiwo_Contig104:700277..700547+ (Heterosigma akashiwo CCMP452)
GTTGCTAGAAGGAGATGTTATGCCTCCATTCATAGCAGGCCTCTGTGTGA ACAAAGATTATAGGCGTAAAGGAATTGCAAAAGCTTTGATTGCTGAGTGC GAATCAGCTGTGCTATCAAGGGGATATGAAACATTGTCGTTGAAAGTTGA GAGTAAGAATGTGGTTGCAAAATCGCTGTACGAGAGTAATGGGTACTCAA ATACTGGTGCCAACCCTGCAGCAAAAATGCTAGTTGGAGACCTTTTGTTT GGAAAAACTGTGACGGTCCAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig104:700277..700547+

>mRNA_H-akashiwo_Contig104.18.1 ID=mRNA_H-akashiwo_Contig104.18.1|Name=mRNA_H-akashiwo_Contig104.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=252bp|location=Sequence derived from alignment at H-akashiwo_Contig104:700277..700547+ (Heterosigma akashiwo CCMP452)
ATGCCTCCATTCATAGCAGGCCTCTGTGTGAACAAAGATTATAGGCGTAA
AGGAATTGCAAAAGCTTTGATTGCTGAGTGCGAATCAGCTGTGCTATCAA
GGGGATATGAAACATTGTCGTTGAAAGTTGAGAGTAAGAATGTGGTTGCA
AAATCGCTGTACGAGAGTAATGGGTACTCAAATACTGGTGCCAACCCTGC
AGCAAAAATGCTAGTTGGAGACCTTTTGTTTGGAAAAACTGTGACGGTCC
AT
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