mRNA_H-akashiwo_Contig104.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.16.1
Unique NamemRNA_H-akashiwo_Contig104.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig104.16.1 vs. uniprot
Match: A0A7S4DI51_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI51_HETAK)

HSP 1 Score: 171 bits (432), Expect = 1.460e-53
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 AHSEASSHAPPPTAPVIRLAPYTEAVWDEDPDLLGMRHHYQPNFVRAWEEAMDQYVAGDWRAAHDAFEALQVMLPIDGP 237
            AHSEASSHAPPPTAPVIRLAPYTEAVWDEDPDLLGMRHHYQPNFVRAWEEAMDQYVAGDWRAAHDAFEALQVMLPIDGP
Sbjct:   16 AHSEASSHAPPPTAPVIRLAPYTEAVWDEDPDLLGMRHHYQPNFVRAWEEAMDQYVAGDWRAAHDAFEALQVMLPIDGP 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DI51_HETAK1.460e-53100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:677593..678135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps24682
PFAMsGuanylate_cyc
Model size237
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.45e-05
EggNOG OGs28IMH@1|root,2SMM2@2759|Eukaryota,2XEI4@2836|Bacillariophyta
DescriptionAdenylate and Guanylate cyclase catalytic domain
Cds size237
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387060.024759-CDS-H-akashiwo_Contig104:677592..6776141681387060.024759-CDS-H-akashiwo_Contig104:677592..677614Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 677593..677614 -
1681387060.0334194-CDS-H-akashiwo_Contig104:677920..6781351681387060.0334194-CDS-H-akashiwo_Contig104:677920..678135Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 677921..678135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.16.1prot_H-akashiwo_Contig104.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 677593..678135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.16.1

>prot_H-akashiwo_Contig104.16.1 ID=prot_H-akashiwo_Contig104.16.1|Name=mRNA_H-akashiwo_Contig104.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=79bp
AHSEASSHAPPPTAPVIRLAPYTEAVWDEDPDLLGMRHHYQPNFVRAWEE
AMDQYVAGDWRAAHDAFEALQVMLPIDGP
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mRNA from alignment at H-akashiwo_Contig104:677593..678135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.16.1 ID=mRNA_H-akashiwo_Contig104.16.1|Name=mRNA_H-akashiwo_Contig104.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=543bp|location=Sequence derived from alignment at H-akashiwo_Contig104:677593..678135- (Heterosigma akashiwo CCMP452)
GCGCACAGCGAGGCCAGCTCGCACGCGCCGCCGCCGACGGCCCCCGTGAT
CCGGCTGGCGCCGTACACGGAGGCCGTGTGGGACGAGGACCCGGACCTGC
TGGGCATGCGGCACCACTACCAGCCGAACTTTGTGCGCGCGTGGGAGGAG
GCCATGGACCAGTACGTGGCCGGGGACTGGCGGGCCGCGCACGACGCCTT
CGAGGCCCTGCAAGTGTGAGTGCCCCCCCCCTACAACTGCCGTCTGCCCC
TTGCCTGATTCGTACTACTATACTACGATGATGTAGTGCAGCCACCACCG
TTAAAAAAGTGGAAGTGGGCCCCACGTATAAATGGGAATCCACTTGAGGA
CGTTCTCCGGCTTTCCATGTTAGATAGTCAATGCAAAAAACTTTATGCAC
ATTCGCTGTGTAGGTTTCTCTCCTCTTGTTAAAAGTGATCTGATTTGCTA
ATTAATTGCGATGTGCCACTCTCGCATTCATCTGTGTTGCAATGACATTG
TAATGTGTACTTATGGAACAGGATGCTACCAATCGACGGCCCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig104:677593..678135-

>mRNA_H-akashiwo_Contig104.16.1 ID=mRNA_H-akashiwo_Contig104.16.1|Name=mRNA_H-akashiwo_Contig104.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=237bp|location=Sequence derived from alignment at H-akashiwo_Contig104:677593..678135- (Heterosigma akashiwo CCMP452)
GCGCACAGCGAGGCCAGCTCGCACGCGCCGCCGCCGACGGCCCCCGTGAT
CCGGCTGGCGCCGTACACGGAGGCCGTGTGGGACGAGGACCCGGACCTGC
TGGGCATGCGGCACCACTACCAGCCGAACTTTGTGCGCGCGTGGGAGGAG
GCCATGGACCAGTACGTGGCCGGGGACTGGCGGGCCGCGCACGACGCCTT
CGAGGCCCTGCAAGTGATGCTACCAATCGACGGCCCT
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