mRNA_H-akashiwo_Contig1039.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1039.5.1
Unique NamemRNA_H-akashiwo_Contig1039.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1039.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1039contigH-akashiwo_Contig1039:225974..226655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size682
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.2317283-UTR-H-akashiwo_Contig1039:225973..2261861681387059.2317283-UTR-H-akashiwo_Contig1039:225973..226186Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1039 225974..226186 +
1681387059.2523487-UTR-H-akashiwo_Contig1039:226570..2266551681387059.2523487-UTR-H-akashiwo_Contig1039:226570..226655Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1039 226571..226655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.242388-CDS-H-akashiwo_Contig1039:226186..2265701681387059.242388-CDS-H-akashiwo_Contig1039:226186..226570Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1039 226187..226570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1039.5.1prot_H-akashiwo_Contig1039.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1039 226187..226570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1039.5.1

>prot_H-akashiwo_Contig1039.5.1 ID=prot_H-akashiwo_Contig1039.5.1|Name=mRNA_H-akashiwo_Contig1039.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=128bp
MAVNRGHSATALEQVESAPSRLQATGRGTISSVSIFEQHPNGTCQWLHVY
RMMKITPYEKKTCRGISFVCLLLRRRSHYSFHFFILSSHFYPESFLAHPH
DGDDDTQYLGVAVYTVVDMTMIWLYFQ*
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mRNA from alignment at H-akashiwo_Contig1039:225974..226655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1039.5.1 ID=mRNA_H-akashiwo_Contig1039.5.1|Name=mRNA_H-akashiwo_Contig1039.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=682bp|location=Sequence derived from alignment at H-akashiwo_Contig1039:225974..226655+ (Heterosigma akashiwo CCMP452)
TGAGCGTGTGCGGTGTGGGCGTTCCGCTTTGGGTGGCGGCGCCGTAGAGG
AGGGGACGGGGGCTCCTCCCTAGATCCGCTTGAGCTTTTCGCTGGGTGTC
ATCTCAGCTTCGCGCTGGGTTGCAACTGCCTGCCATGTCCCCAGATTCCG
GGACTGAGGCCAGGATCAAGTCAGATCACGAACACTCTCTGGGGCGACCC
TGCATGCCAGGGCATGGCAGTGAACCGAGGACACTCTGCAACTGCATTGG
AACAAGTAGAATCTGCACCCAGCAGGTTGCAAGCAACAGGAAGAGGAACA
ATCAGTTCCGTCTCAATATTCGAGCAGCATCCTAATGGAACGTGTCAGTG
GCTGCATGTATATCGTATGATGAAAAtTACACCATATGAAAAGAAAACAT
GCAGAGGCATTAGTTTTGTTTGTTTGCTGCTGCGCAGAAGGAGCCATTAC
TCTTTTCATTTTTTCATATTATCTTCTCATTTCTATCCTGAATCCTTCCT
TGCTCATCCCCATGATGGTGATGACGACACACAGTATCTAGGAGTAGCAG
TATATACAGTAGTAGATATGACGATGATCTGGCTGTATTTTCAATAACAA
AGAATTTTAAAGTTGTTTGAAAATACTACAGAACACATGTATTGATGCTT
GATCTCTTCACTGCTGGGTCCTGGCCCTGTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1039:225974..226655+

>mRNA_H-akashiwo_Contig1039.5.1 ID=mRNA_H-akashiwo_Contig1039.5.1|Name=mRNA_H-akashiwo_Contig1039.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=384bp|location=Sequence derived from alignment at H-akashiwo_Contig1039:225974..226655+ (Heterosigma akashiwo CCMP452)
ATGGCAGTGAACCGAGGACACTCTGCAACTGCATTGGAACAAGTAGAATC
TGCACCCAGCAGGTTGCAAGCAACAGGAAGAGGAACAATCAGTTCCGTCT
CAATATTCGAGCAGCATCCTAATGGAACGTGTCAGTGGCTGCATGTATAT
CGTATGATGAAAAtTACACCATATGAAAAGAAAACATGCAGAGGCATTAG
TTTTGTTTGTTTGCTGCTGCGCAGAAGGAGCCATTACTCTTTTCATTTTT
TCATATTATCTTCTCATTTCTATCCTGAATCCTTCCTTGCTCATCCCCAT
GATGGTGATGACGACACACAGTATCTAGGAGTAGCAGTATATACAGTAGT
AGATATGACGATGATCTGGCTGTATTTTCAATAA
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