mRNA_H-akashiwo_Contig1038.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1038.1.1
Unique NamemRNA_H-akashiwo_Contig1038.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: T1J704_STRMM (GPI mannosyltransferase 1 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J704_STRMM)

HSP 1 Score: 71.6 bits (174), Expect = 2.620e-12
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:  164 VTGWLKYADVIAFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAF 331
            +T WLKY  V A L+R+ L+ +G W D  F +KYTD+DYHVF+DAA +VT+GKS +
Sbjct:   28 LTKWLKYQLVSAALVRICLVFYGTWHDVNFALKYTDVDYHVFSDAALLVTDGKSPY 83
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BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: A0A4Z2E8S5_9TELE (GPI mannosyltransferase 1 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2E8S5_9TELE)

HSP 1 Score: 67.8 bits (164), Expect = 3.220e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  197 AFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAFD 334
            +F +RL L+A+GD+QD    VKYTDIDYHVFTDAAR +TEG+S ++
Sbjct:   18 SFAVRLALVAYGDYQDRTMAVKYTDIDYHVFTDAARFITEGQSPYN 63
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BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: A0A3M6UWS7_POCDA (GPI mannosyltransferase 1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6UWS7_POCDA)

HSP 1 Score: 71.2 bits (173), Expect = 3.570e-12
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 2 
Query:  194 IAFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAF 331
            IAFLLRL LI +G+WQD    VKYTDIDYHVFTDAAR V EG S +
Sbjct:   17 IAFLLRLCLIVYGEWQDKNMVVKYTDIDYHVFTDAARHVVEGNSPY 62
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BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: UPI000C0429F2 (GPI mannosyltransferase 1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0429F2)

HSP 1 Score: 71.2 bits (173), Expect = 3.570e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2 
Query:  191 VIAFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAF 331
            +IAFLLR+ LI +G+WQD+   VKYTDIDYHVFTDAAR V EG S +
Sbjct:   16 MIAFLLRICLIVYGEWQDTNMVVKYTDIDYHVFTDAARHVVEGNSPY 62
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BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: A0A0S7M016_9TELE (GPI mannosyltransferase 1 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7M016_9TELE)

HSP 1 Score: 67.8 bits (164), Expect = 3.610e-12
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:  197 AFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAFD 334
            +F LRL L+A+GD+QD    VKYTDIDYHVFTDAAR +T+G+S ++
Sbjct:   18 SFALRLALVAYGDYQDRTMAVKYTDIDYHVFTDAARFITQGESPYN 63
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BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: A0A250XGI0_9CHLO (GPI mannosyltransferase 1 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XGI0_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 3.860e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2 
Query:  203 LLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAFD 334
            +LRL+LIAWG++QD  FEVKYTDIDYHVFTDAA  VT GKS ++
Sbjct:   18 VLRLLLIAWGEFQDRNFEVKYTDIDYHVFTDAAWYVTRGKSPYE 61
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BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: A0A2B4RT97_STYPI (Fucosyltransferase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RT97_STYPI)

HSP 1 Score: 71.2 bits (173), Expect = 4.170e-12
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2 
Query:  191 VIAFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAF 331
            +IAFLLR+ LI +G+WQD+   VKYTDIDYHVFTDAAR V EG S +
Sbjct:   16 MIAFLLRICLIVYGEWQDTNMVVKYTDIDYHVFTDAARHVVEGNSPY 62
[Close]
BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: A0A7N6B143_ANATE (GPI mannosyltransferase 1 n=3 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N6B143_ANATE)

HSP 1 Score: 70.5 bits (171), Expect = 6.620e-12
Identity = 29/47 (61.70%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:  194 IAFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAFD 334
            ++F +RL L+A+GD+QD   +VKYTDIDYHVFTDAAR +TEG+S ++
Sbjct:   17 VSFAIRLALVAYGDYQDRTLDVKYTDIDYHVFTDAARFITEGESPYN 63
[Close]
BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: A0A6P7KF48_9TELE (GPI mannosyltransferase 1 n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7KF48_9TELE)

HSP 1 Score: 70.5 bits (171), Expect = 6.640e-12
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:  197 AFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAFD 334
            +F++RL L+A+GD+QDS   VKYTDIDYHVFTDAAR +TEG+S ++
Sbjct:   18 SFVIRLALVAYGDYQDSTMVVKYTDIDYHVFTDAARFITEGESPYN 63
[Close]
BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Match: UPI0001CB95AE (GPI mannosyltransferase 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB95AE)

HSP 1 Score: 70.1 bits (170), Expect = 7.580e-12
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  176 LKYADVIAFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKSAFD 334
            +K++   A L RLVL+ +G+WQD   +VKYTD+DYHVFTDAAR VT+G+S ++
Sbjct:    4 VKHSVCAAVLTRLVLLLYGEWQDRTMQVKYTDVDYHVFTDAARYVTQGESPYE 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1038.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T1J704_STRMM2.620e-1255.36GPI mannosyltransferase 1 n=1 Tax=Strigamia mariti... [more]
A0A4Z2E8S5_9TELE3.220e-1263.04GPI mannosyltransferase 1 n=1 Tax=Liparis tanakae ... [more]
A0A3M6UWS7_POCDA3.570e-1271.74GPI mannosyltransferase 1 n=2 Tax=Pocillopora dami... [more]
UPI000C0429F23.570e-1268.09GPI mannosyltransferase 1-like n=1 Tax=Stylophora ... [more]
A0A0S7M016_9TELE3.610e-1263.04GPI mannosyltransferase 1 n=1 Tax=Poeciliopsis pro... [more]
A0A250XGI0_9CHLO3.860e-1272.73GPI mannosyltransferase 1 n=1 Tax=Chlamydomonas eu... [more]
A0A2B4RT97_STYPI4.170e-1268.09Fucosyltransferase n=1 Tax=Stylophora pistillata T... [more]
A0A7N6B143_ANATE6.620e-1261.70GPI mannosyltransferase 1 n=3 Tax=Anabas testudine... [more]
A0A6P7KF48_9TELE6.640e-1265.22GPI mannosyltransferase 1 n=1 Tax=Parambassis rang... [more]
UPI0001CB95AE7.580e-1256.60GPI mannosyltransferase 1-like n=1 Tax=Saccoglossu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1038contigH-akashiwo_Contig1038:36978..37570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog126957.SMAR009435-PA
Preferred namePIGM
PFAMsMannosyl_trans
Model size335
Max annot lvl33208|Metazoa
KEGG koko:K05284
KEGG ReactionR05919
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
Hectar predicted targeting categoryother localisation
GOsGO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019637,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
Exons3
Evalue3.23e-13
EggNOG OGsKOG3893@1|root,KOG3893@2759|Eukaryota,38CA7@33154|Opisthokonta,3BDX4@33208|Metazoa,3CXU1@33213|Bilateria,41TY8@6656|Arthropoda
DescriptionTransferase activity, transferring hexosyl groups. It is involved in the biological process described with GPI anchor biosynthetic process
Cds size309
COG categoryG
CAZyGT50
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.1276252-UTR-H-akashiwo_Contig1038:36977..370021681387059.1276252-UTR-H-akashiwo_Contig1038:36977..37002Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1038 36978..37002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.1395757-CDS-H-akashiwo_Contig1038:37002..371471681387059.1395757-CDS-H-akashiwo_Contig1038:37002..37147Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1038 37003..37147 +
1681387059.152856-CDS-H-akashiwo_Contig1038:37272..373511681387059.152856-CDS-H-akashiwo_Contig1038:37272..37351Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1038 37273..37351 +
1681387059.168208-CDS-H-akashiwo_Contig1038:37485..375701681387059.168208-CDS-H-akashiwo_Contig1038:37485..37570Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1038 37486..37570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1038.1.1prot_H-akashiwo_Contig1038.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1038 37003..37570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1038.1.1

>prot_H-akashiwo_Contig1038.1.1 ID=prot_H-akashiwo_Contig1038.1.1|Name=mRNA_H-akashiwo_Contig1038.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
MTMAAKRRGRGKQQDTKDEIVGPLPSIPPSQPATPETMADKAPETPVTGW
LKYADVIAFLLRLVLIAWGDWQDSRFEVKYTDIDYHVFTDAARMVTEGKS
AFD
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mRNA from alignment at H-akashiwo_Contig1038:36978..37570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1038.1.1 ID=mRNA_H-akashiwo_Contig1038.1.1|Name=mRNA_H-akashiwo_Contig1038.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=593bp|location=Sequence derived from alignment at H-akashiwo_Contig1038:36978..37570+ (Heterosigma akashiwo CCMP452)
CTCGTCCTTGGCGTCACTGTAACTTATGACAATGGCAGCAAAAAGGCGGG
GGCGAGGAAAACAACAAGACACAAAAGATGAAATCGTAGGCCCGCTACCA
AGTATCCCACCTTCTCAACCTGCCACCCCTGAAACAATGGCAGACAAAGC
CCCGGAAACTCCTGTTACAGGTACAATCTGGTACATAGCTTTGACATACC
ATTTTGCTGCAAAAATATTGTGGGCTGTAGATAAAGTTCTGACTAAAAAC
ATAAATCAATGATTGATTGTATTCTGTGTGTTTTGAATTCTTTAGGTTGG
TTGAAGTATGCCGATGTCATCGCTTTTTTGCTTCGATTAGTTCTAATCGC
CTGGGGGGATTGGCAAGACAGCAGGTACAATCGAACAATAAGAGCACAAA
TGATCAAGGCAGCCTTACTTATCTCGTATTTTTGAAATATTTACCTCTAA
TACGGCCACAAGCACTGCTGCTTATCAATTCAAAACTTTACTTTTTTTTT
GGCGCCAGGTTTGAAGTGAAGTACACCGATATTGACTACCATGTGTTTAC
GGACGCAGCCAGGATGGTTACAGAGGGGAAATCTGCCTTTGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1038:36978..37570+

>mRNA_H-akashiwo_Contig1038.1.1 ID=mRNA_H-akashiwo_Contig1038.1.1|Name=mRNA_H-akashiwo_Contig1038.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig1038:36978..37570+ (Heterosigma akashiwo CCMP452)
ATGACAATGGCAGCAAAAAGGCGGGGGCGAGGAAAACAACAAGACACAAA
AGATGAAATCGTAGGCCCGCTACCAAGTATCCCACCTTCTCAACCTGCCA
CCCCTGAAACAATGGCAGACAAAGCCCCGGAAACTCCTGTTACAGGTTGG
TTGAAGTATGCCGATGTCATCGCTTTTTTGCTTCGATTAGTTCTAATCGC
CTGGGGGGATTGGCAAGACAGCAGGTTTGAAGTGAAGTACACCGATATTG
ACTACCATGTGTTTACGGACGCAGCCAGGATGGTTACAGAGGGGAAATCT
GCCTTTGAT
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