mRNA_H-akashiwo_Contig1037.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1037.5.1
Unique NamemRNA_H-akashiwo_Contig1037.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A7S2UU84_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU84_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.970e-44
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = -1
Query:  292 PEGGGDESSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGG 549
            P+GGG+E++TITIRV+DQTGEETFFKVKKTTRMEKVFTTYA RKGV V+ALRFLLDGERVNP HTPKMLDLE+ DQIDCMLEQQGG
Sbjct:   15 PDGGGEENNTITIRVRDQTGEETFFKVKKTTRMEKVFTTYASRKGVQVNALRFLLDGERVNPAHTPKMLDLEDQDQIDCMLEQQGG 100          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A835YTL0_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.330e-36
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = -1
Query:  292 EPTEPTQGEETTKPEGGGDESSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGG 588
            E ++P  G E  KP G      TITIRV+DQTGEETFFKVKKTTRMEKVF+TYAQRKGV  SALRFLLDG+RV+P+ TP  LDLE+ D IDCMLEQQGG
Sbjct:    3 EDSKPDVGAEDKKPAG-----ETITIRVRDQTGEETFFKVKKTTRMEKVFSTYAQRKGVQASALRFLLDGDRVDPNQTPGELDLEDQDMIDCMLEQQGG 96          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A7S2G492_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G492_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.590e-35
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = -1
Query:  289 KPEGGGDESS-TITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGGC 552
            KP+   DE   TITIRV+DQTGEETFFKVKK+TR EKVF+TYAQRKGV+V++LRFL+DGER+NP  +P  LD+E+ DQIDCMLEQQGGC
Sbjct:   28 KPKPSADEKGETITIRVRDQTGEETFFKVKKSTRFEKVFSTYAQRKGVNVASLRFLIDGERINPSQSPAELDMEDQDQIDCMLEQQGGC 116          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A7S2W0L4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0L4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.450e-33
Identity = 65/98 (66.33%), Postives = 76/98 (77.55%), Query Frame = -1
Query:  292 PTEPTQGEETTKPEGGGDESSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGG 585
            P  P    E  KP+   D+++TITIRVKDQ+GEETFFKVKKTTRMEKVF TYA RKGV    LRFLLDG+R+N + TP+ LDLE+ DQIDC+LEQ GG
Sbjct:   17 PLAPGAMAEEEKPKPAADDANTITIRVKDQSGEETFFKVKKTTRMEKVFNTYASRKGVRTDTLRFLLDGDRINGEMTPEQLDLEDQDQIDCLLEQVGG 114          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A448ZJ15_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ15_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.960e-33
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = -1
Query:  292 ITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGG 519
            ITIRV+DQTGEETFFK+KKTT+M KVF TYA RKGV +S+LRFLLDGER+ PD TPKML+L++ DQIDCMLEQ GG
Sbjct:   15 ITIRVRDQTGEETFFKIKKTTKMSKVFGTYANRKGVQLSSLRFLLDGERIEPDQTPKMLELDDQDQIDCMLEQSGG 90          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A7S1D4N0_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D4N0_CYCTE)

HSP 1 Score: 123 bits (309), Expect = 5.270e-33
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = -1
Query:  295 ETTKPEGGGDESSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQG 561
            E  KPEG    S  ITIRV+DQTGEETFFK+KKTT+M KVF TYAQRKGV  ++LRFLLDGER+ PD TPKML+L++ DQIDCMLEQ G
Sbjct:    3 EEAKPEG----SEPITIRVRDQTGEETFFKIKKTTKMSKVFETYAQRKGVQSTSLRFLLDGERIEPDATPKMLELDDQDQIDCMLEQTG 87          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: B7G0R2_PHATC (Small ubiquitin-like modifier n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0R2_PHATC)

HSP 1 Score: 123 bits (308), Expect = 7.910e-33
Identity = 57/79 (72.15%), Postives = 71/79 (89.87%), Query Frame = -1
Query:  292 SSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGG 528
            + +IT+RV+DQTGEETFFK+KKTT+M+KVF TYA RKGV V++LRFLLDG+R+ PD TPKML+LE+ DQIDC+LEQ GG
Sbjct:   14 AESITVRVRDQTGEETFFKIKKTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLELEDQDQIDCVLEQTGG 92          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A7S2XQM2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQM2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 8.730e-33
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  292 TKPEGGGDESSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGG 555
            TKPEG    S  ITIRV+DQTGEETFFK+KKTT+M KVF TYAQRKGV  ++LRFLLDGER+ PD TP+ L+L++ DQIDCMLEQ GG
Sbjct:   33 TKPEGA---SEPITIRVRDQTGEETFFKIKKTTKMAKVFETYAQRKGVQSASLRFLLDGERIQPDATPRQLELDDQDQIDCMLEQTGG 117          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A067CC35_SAPPC (Ubiquitin-like domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CC35_SAPPC)

HSP 1 Score: 122 bits (307), Expect = 9.100e-33
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = -1
Query:  289 GGDESSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGGC 540
            G D+  TITIRVKDQ+GEETFFKVK  T+MEK+F+ YAQRKGV V+ALRFLLDG R+  D TPKML+LE+ DQIDC LEQ GGC
Sbjct:   13 GEDKKQTITIRVKDQSGEETFFKVKPHTKMEKIFSAYAQRKGVPVTALRFLLDGTRIAADQTPKMLELEDQDQIDCALEQVGGC 96          
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Match: A0A7S1YCA7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YCA7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 9.140e-32
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = -1
Query:  292 SSTITIRVKDQTGEETFFKVKKTTRMEKVFTTYAQRKGVSVSALRFLLDGERVNPDHTPKMLDLEEHDQIDCMLEQQGG 528
            S  ITIRV+DQ+GEETFFK+KKTT+M KVF TYAQRKGV+ S+LRFLLDGER+  D TPKML+L++ DQIDCMLEQ GG
Sbjct:   46 SEPITIRVRDQSGEETFFKIKKTTKMSKVFETYAQRKGVNSSSLRFLLDGERIEGDQTPKMLELDDQDQIDCMLEQTGG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1037.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UU84_9STRA3.970e-4487.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YTL0_9STRA6.330e-3671.72Ubiquitin-related domain-containing protein n=1 Ta... [more]
A0A7S2G492_9STRA1.590e-3573.03Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2W0L4_9STRA1.450e-3366.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A448ZJ15_9STRA1.960e-3377.63Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A7S1D4N0_CYCTE5.270e-3371.91Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7G0R2_PHATC7.910e-3372.15Small ubiquitin-like modifier n=3 Tax=Phaeodactylu... [more]
A0A7S2XQM2_9STRA8.730e-3371.59Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A067CC35_SAPPC9.100e-3372.62Ubiquitin-like domain-containing protein n=4 Tax=S... [more]
A0A7S1YCA7_9STRA9.140e-3274.68Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1037contigH-akashiwo_Contig1037:151845..152474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size632
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387058.844282-UTR-H-akashiwo_Contig1037:151844..1520991681387058.844282-UTR-H-akashiwo_Contig1037:151844..152099Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1037 151845..152099 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387058.8549101-CDS-H-akashiwo_Contig1037:152099..1524741681387058.8549101-CDS-H-akashiwo_Contig1037:152099..152474Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1037 152100..152474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1037.5.1prot_H-akashiwo_Contig1037.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1037 152100..152474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1037.5.1

>prot_H-akashiwo_Contig1037.5.1 ID=prot_H-akashiwo_Contig1037.5.1|Name=mRNA_H-akashiwo_Contig1037.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=125bp
MCCDIEKSKCSAPSLLLKHAVNLIMFFEIKHLGGVIWIYTLSIKKKPKCT
DRHTLSLGVCCKNLFHPRCLLYFEKCFLPSLILDPNSDSAGLIAATLWFG
GLLPLSWFGRFISLTLHFRSKLLSF
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mRNA from alignment at H-akashiwo_Contig1037:151845..152474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1037.5.1 ID=mRNA_H-akashiwo_Contig1037.5.1|Name=mRNA_H-akashiwo_Contig1037.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=630bp|location=Sequence derived from alignment at H-akashiwo_Contig1037:151845..152474+ (Heterosigma akashiwo CCMP452)
TTTTGAGAAAGCGTTTACATCAATAATTATGATTGAGTTAAATAACACAA ATGACTTCTTCCTAGGAGAATCCACTACAGAGGGAATATCCATTCCCAGC AATGCAGTGGTAGAAAATATGATGATACCTAAGTGCAAATGAATCCAATA AAGATAAAGATAAAGCCACGAGCACATTTGATTTACATCCGTCGAGACCA GAAAATCCAAAGAAAGCACCGATAACATCGATGCACCTGCACCGATCCAA GAACTATGTGTTGTGATATCGAAAAATCCAAGTGTTCAGCACCCTCCTTG CTGCTCAAGCATGCAGTCAATTTGATCATGTTCTTCGAGATCAAGCATCT TGGGGGTGTGATCTGGATTTACACGCTCTCCATCAAGAAGAAACCGAAGT GCACTGACAGACACACCCTTTCGTTGGGCGTATGTTGTAAAAACCTTTTC CATCCGCGTTGTCTTCTTTACTTTGAAAAATGTTTCCTCCCCAGTCTGAT CCTTGACCCGAATAGTGATAGTGCTGGACTCATCGCCGCCACCCTCTGGT TTGGTGGTCTCCTCCCCCTGAGTTGGTTCGGTCGGTTCATCAGTCTTACC CTCCATTTTAGAAGCAAGCTACTTTCTTTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1037:151845..152474+

>mRNA_H-akashiwo_Contig1037.5.1 ID=mRNA_H-akashiwo_Contig1037.5.1|Name=mRNA_H-akashiwo_Contig1037.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig1037:151845..152474+ (Heterosigma akashiwo CCMP452)
ATGTGTTGTGATATCGAAAAATCCAAGTGTTCAGCACCCTCCTTGCTGCT
CAAGCATGCAGTCAATTTGATCATGTTCTTCGAGATCAAGCATCTTGGGG
GTGTGATCTGGATTTACACGCTCTCCATCAAGAAGAAACCGAAGTGCACT
GACAGACACACCCTTTCGTTGGGCGTATGTTGTAAAAACCTTTTCCATCC
GCGTTGTCTTCTTTACTTTGAAAAATGTTTCCTCCCCAGTCTGATCCTTG
ACCCGAATAGTGATAGTGCTGGACTCATCGCCGCCACCCTCTGGTTTGGT
GGTCTCCTCCCCCTGAGTTGGTTCGGTCGGTTCATCAGTCTTACCCTCCA
TTTTAGAAGCAAGCTACTTTCTTTC
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