mRNA_H-akashiwo_Contig1037.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1037.4.1
Unique NamemRNA_H-akashiwo_Contig1037.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 346 bits (888), Expect = 6.620e-116
Identity = 167/170 (98.24%), Postives = 169/170 (99.41%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIY 510
            LLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAR MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCI+
Sbjct:  120 LLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIF 289          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 346 bits (888), Expect = 1.340e-113
Identity = 167/170 (98.24%), Postives = 169/170 (99.41%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIY 510
            LLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAR MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCI+
Sbjct:  120 LLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIF 289          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 259 bits (662), Expect = 4.550e-84
Identity = 122/151 (80.79%), Postives = 135/151 (89.40%), Query Frame = 1
Query:   58 MVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIY 510
            MV KKTGETRMCLDLR+LNAITTP+KFPLPT R MFD L  AYYF+SLDMLWAYWSVPLR+ DK KTAFTVRN+KYAFNVMCFGLTNAPATFSHLVNKVFQGCQ++FALCFLDDVLCY+  +F+LHL  L +IF RM  ANLKFKLPKC++
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLF 151          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A0P5XPI7_9CRUS (Polyprotein of retroviral origin (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5XPI7_9CRUS)

HSP 1 Score: 155 bits (393), Expect = 8.700e-43
Identity = 77/173 (44.51%), Postives = 107/173 (61.85%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIYLEQ 519
            +L   ++ ES S F A IVMV KK GE RMC+D RALN IT   K+PLP      D L  ++YF+ LD+L  YW + + E DK KTAF     +Y FN M FGLTNAP+TF   +N + +   Y+FAL +LDD++ +S  + T H+ HL  +F+ ++ A LK K  KC + ++
Sbjct:  123 MLSNKILRESHSPFAAAIVMVPKKDGEMRMCIDYRALNKITVKDKYPLPRIDDTIDALCGSFYFSILDLLSGYWQIEIEESDKHKTAFICEFGQYEFNRMPFGLTNAPSTFQRAMNNILKTVLYKFALVYLDDIIVFS-NSITDHVTHLEAVFRLLKQAGLKLKRKKCEFFKE 294          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A6B0VG58_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VG58_IXORI)

HSP 1 Score: 158 bits (399), Expect = 1.360e-41
Identity = 76/170 (44.71%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIY 510
            +LK+GVI  S S+F++P+V+V KK G  R C+D R LN IT    +P+P      D+L  A YF+SLD+   YW +P+ E DK KTAF   +  Y FNVM FGL NAPATF  +++ + +G +++  LC+LDD++ +S  NF  HL  LSQ+   + AANL+    KC +
Sbjct:   59 MLKKGVIRPSCSSFSSPVVLVKKKDGGIRFCIDYRELNEITRKDLYPMPRIDDALDSLQGAEYFSSLDLRSGYWQIPVNEEDKEKTAFVTPDGLYEFNVMPFGLCNAPATFERMIDNILRGLKWKTCLCYLDDIVIFSS-NFEEHLERLSQVLSCLSAANLQLNTKKCTF 227          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A0P5U4C5_9CRUS (Polyprotein of retroviral origin (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5U4C5_9CRUS)

HSP 1 Score: 147 bits (372), Expect = 1.810e-41
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFK 492
            +L   ++ ES S F A IVMV KK GE RMC+D RALN IT   K+PLP      D L  + YF+ LD+L  YW + + E DK KTAF     +Y FN M FGLTNAP+TF   +N + +   Y+FAL +LDD++ +S  + T H+ HL  +F+ ++ A LK K
Sbjct:   62 MLSNKILRESHSPFAAAIVMVPKKDGEMRMCIDYRALNKITVKDKYPLPRIDDTIDALCGSVYFSILDLLSDYWQIEIEESDKHKTAFICEFGQYEFNRMPFGLTNAPSTFQRAMNNILKTVLYKFALVYLDDIIVFS-NSITDHVTHLEAVFRLLKQAGLKLK 224          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A015L6B7_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015L6B7_RHIIW)

HSP 1 Score: 145 bits (367), Expect = 3.440e-41
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 1
Query:   10 QGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIY 510
            QG+I +S+S + +P+V+V KK GE R+C+D R LNA+T    +PLP    M ++ + A +FT+LD+   YW V +   D  KTAF      Y F VM FGL  AP TF  L+N++ Q    +F   +LDDV+ YS      HL HL Q+F+ +R ANLK KL KC +
Sbjct:    4 QGLIRKSASPWASPVVIVDKKGGEKRLCIDYRKLNAVTKADAYPLPRIDDMLESFSNATWFTTLDLASGYWQVAMDPADIEKTAFITPFGLYKFLVMPFGLAYAPGTFQRLMNRILQEYLGKFVAVYLDDVIIYSKGTLEQHLDHLRQVFETLRRANLKIKLKKCYF 170          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A2G8JPY9_STIJA (Retrovirus-related Pol polyprotein from transposon n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JPY9_STIJA)

HSP 1 Score: 149 bits (375), Expect = 4.400e-41
Identity = 74/173 (42.77%), Postives = 104/173 (60.12%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIYLEQ 519
            +LK+GVI  SSS + +P+V+V KK G TR C+D R LN ITT   +P+P      D+L  + +FT+LD+   YW V + E D+ KTAF   +  Y F VM FGL NAPATF  L+ K+  G Q++  L +LDDV+ +  +NF  H+  +  +F R + A LK    KC   +Q
Sbjct:    1 MLKRGVIEPSSSPWASPVVLVKKKDGSTRFCVDYRRLNDITTKDSYPIPRIDDSLDSLNGSTWFTTLDLASGYWQVEMDESDREKTAFITHSGLYQFCVMPFGLCNAPATFERLMEKILSGLQWQTCLVYLDDVIIFG-KNFEEHIAAIDDVFTRFKLAGLKLSPKKCFLFKQ 172          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A815BYL6_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815BYL6_9BILA)

HSP 1 Score: 150 bits (378), Expect = 1.240e-40
Identity = 72/168 (42.86%), Postives = 107/168 (63.69%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKC 504
            LLKQG+I ES+S +++PIV+V KK G  R C+D R LN ITT   FP+P    +FD+L++A Y+T++D    Y+ V L   D+ KTAF+ R+R Y F V+  G+TN P  F  +V+++    +++++L +LDD + YSP  F  HL HL  I  R+  AN +  + KC
Sbjct:   85 LLKQGIIEESTSPWSSPIVLVRKKDGSVRFCIDFRKLNNITTKDAFPIPQIDDIFDHLSQAEYYTTIDFKSGYFQVGLDPKDRPKTAFSTRDRHYQFTVLPQGVTNDPPAFQRIVSQILGPTRWQYSLAYLDDAIIYSP-TFDQHLTHLDDILNRLNDANFRLNVNKC 251          
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Match: A0A015J1N0_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J1N0_RHIIW)

HSP 1 Score: 150 bits (379), Expect = 1.410e-40
Identity = 72/170 (42.35%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    1 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIY 510
            +L+QG+I  S+S ++ P+V+V KK G+ R C++ + LN IT    +PLP    + D+L +A +FT+LD+   YW + +R  D+ KTAF  +   Y F VM FGL NAPATF   ++KV  G + +F L +LDDV+ YS + F  H+ HL ++  R+R ANL+ K  KC +
Sbjct:    1 MLEQGLIKPSTSPWSFPVVVVKKKNGKLRFCVNYKPLNDITKKDNYPLPRIDELLDSLQDAQWFTTLDLASGYWQIKVRAEDQEKTAFITKFGTYEFKVMPFGLCNAPATFQRTMDKVLHGIKEKFVLVYLDDVIIYS-KTFKDHIQHLEEVLNRIRKANLRLKAEKCYF 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1037.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK6.620e-11698.24Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK1.340e-11398.24Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK4.550e-8480.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P5XPI7_9CRUS8.700e-4344.51Polyprotein of retroviral origin (Fragment) n=1 Ta... [more]
A0A6B0VG58_IXORI1.360e-4144.71RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
A0A0P5U4C5_9CRUS1.810e-4145.73Polyprotein of retroviral origin (Fragment) n=1 Ta... [more]
A0A015L6B7_RHIIW3.440e-4143.71Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]
A0A2G8JPY9_STIJA4.400e-4142.77Retrovirus-related Pol polyprotein from transposon... [more]
A0A815BYL6_9BILA1.240e-4042.86Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A015J1N0_RHIIW1.410e-4042.35Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1037contigH-akashiwo_Contig1037:119912..120430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4096.XP_009797113.1
PFAMsRVP_2,RVT_1,Retrotrans_gag,rve
Model size519
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.55e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37NRU@33090|Viridiplantae,3GGV0@35493|Streptophyta,44PGP@71274|asterids
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size519
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387058.9338307-CDS-H-akashiwo_Contig1037:119911..1204301681387058.9338307-CDS-H-akashiwo_Contig1037:119911..120430Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1037 119912..120430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1037.4.1prot_H-akashiwo_Contig1037.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1037 119912..120430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1037.4.1

>prot_H-akashiwo_Contig1037.4.1 ID=prot_H-akashiwo_Contig1037.4.1|Name=mRNA_H-akashiwo_Contig1037.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=173bp
LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPT
ARGMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVM
CFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLS
QIFKRMRAANLKFKLPKCIYLEQ
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mRNA from alignment at H-akashiwo_Contig1037:119912..120430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1037.4.1 ID=mRNA_H-akashiwo_Contig1037.4.1|Name=mRNA_H-akashiwo_Contig1037.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=519bp|location=Sequence derived from alignment at H-akashiwo_Contig1037:119912..120430- (Heterosigma akashiwo CCMP452)
TTGTTGAAACAAGGAGTAATCTCAGAGAGTTCAAGTAATTTCAACGCACC AATAGTAATGGTGGCTAAGAAAACGGGGGAGACACGAATGTGTTTAGATT TGAGGGCTCTGAACGCTATCACAACGCCATCAAAATTTCCTTTACCAACA GCCAGGGGAATGTTTGACAATTTGGCGGAAGCATACTACTTTACCAGCTT GGACATGCTATGGGCGTATTGGAGTGTTCCGTTGAGAGAAGGAGACAAGT CCAAGACAGCTTTTACTGTGAGAAACAGAAAGTATGCATTCAACGTAATG TGCTTTGGACTAACAAACGCACCAGCCACTTTCAGTCATTTGGTGAATAA GGTTTTCCAAGGGTGCCAGTACGAGTTCGCACTGTGTTTTCTGGATGACG TACTGTGTTACTCACCCAGGAATTTCACACTACATCTGTATCACTTGAGT CAGATATTCAAGAGAATGAGGGCAGCCAACTTGAAGTTCAAATTGCCCAA GTGCATATATTTGGAGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1037:119912..120430-

>mRNA_H-akashiwo_Contig1037.4.1 ID=mRNA_H-akashiwo_Contig1037.4.1|Name=mRNA_H-akashiwo_Contig1037.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=519bp|location=Sequence derived from alignment at H-akashiwo_Contig1037:119912..120430- (Heterosigma akashiwo CCMP452)
TTGTTGAAACAAGGAGTAATCTCAGAGAGTTCAAGTAATTTCAACGCACC
AATAGTAATGGTGGCTAAGAAAACGGGGGAGACACGAATGTGTTTAGATT
TGAGGGCTCTGAACGCTATCACAACGCCATCAAAATTTCCTTTACCAACA
GCCAGGGGAATGTTTGACAATTTGGCGGAAGCATACTACTTTACCAGCTT
GGACATGCTATGGGCGTATTGGAGTGTTCCGTTGAGAGAAGGAGACAAGT
CCAAGACAGCTTTTACTGTGAGAAACAGAAAGTATGCATTCAACGTAATG
TGCTTTGGACTAACAAACGCACCAGCCACTTTCAGTCATTTGGTGAATAA
GGTTTTCCAAGGGTGCCAGTACGAGTTCGCACTGTGTTTTCTGGATGACG
TACTGTGTTACTCACCCAGGAATTTCACACTACATCTGTATCACTTGAGT
CAGATATTCAAGAGAATGAGGGCAGCCAACTTGAAGTTCAAATTGCCCAA
GTGCATATATTTGGAGCAG
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