mRNA_H-akashiwo_Contig1034.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1034.5.1
Unique NamemRNA_H-akashiwo_Contig1034.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1034.5.1 vs. uniprot
Match: A0A7S4DEM6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEM6_HETAK)

HSP 1 Score: 217 bits (553), Expect = 6.670e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 3 
Query:    3 GYWHSTVAMYSLSRQSSVAQQKYNLDQLEELEHWGHPGHLDEKQQKCLQQMRARVSSDELEHIKFQVESEDSALCRYLRARKFDVDAAYEMVKNCRKRRLADDVARCVA 329
            GYWHSTVAMYSLSRQSSVAQQKYNLDQLEELEHWGHPGHLDEKQQKCLQQMRARVSSDELEHIKFQVESEDSALCRYLRARKFDVDAAYEMVKNCRKRRLADDVARCVA
Sbjct:   13 GYWHSTVAMYSLSRQSSVAQQKYNLDQLEELEHWGHPGHLDEKQQKCLQQMRARVSSDELEHIKFQVESEDSALCRYLRARKFDVDAAYEMVKNCRKRRLADDVARCVA 121
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BLAST of mRNA_H-akashiwo_Contig1034.5.1 vs. uniprot
Match: A0A7S3UMK7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UMK7_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 4.690e-14
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 3 
Query:  102 WGHPGHLDEKQQKCLQQMRARVSSDELEHIKFQVESEDSALCRYLRARKFDVDAAYEMVKNCRK 293
            WG PGHLD KQ+   + +R +++ D+L  IKF+VE+E+SALCR+LRARKFD+ A   M++ C K
Sbjct:   25 WGFPGHLDSKQESAYEAVRQKITPDQLRVIKFEVETEESALCRFLRARKFDIGATTAMIEECVK 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1034.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4DEM6_HETAK6.670e-71100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UMK7_HETAK4.690e-1453.13Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1034contigH-akashiwo_Contig1034:164305..165100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5478.XP_445602.2
Preferred nameSEC14
PFAMsCRAL_TRIO,CRAL_TRIO_N
Model size330
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000226,GO:0003006,GO:0003674,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006656,GO:0006657,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006892,GO:0006893,GO:0006896,GO:0006900,GO:0006996,GO:0007010,GO:0007017,GO:0007034,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008525,GO:0008526,GO:0008610,GO:0008654,GO:0009058,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010563,GO:0010876,GO:0010927,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019637,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0030427,GO:0030435,GO:0030437,GO:0031090,GO:0031321,GO:0031322,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031984,GO:0032153,GO:0032502,GO:0032505,GO:0032989,GO:0033036,GO:0034293,GO:0034613,GO:0035838,GO:0042763,GO:0042764,GO:0042886,GO:0043001,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0045184,GO:0045833,GO:0045936,GO:0046470,GO:0046474,GO:0046486,GO:0046488,GO:0046890,GO:0046907,GO:0048193,GO:0048194,GO:0048468,GO:0048519,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051055,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051286,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0060187,GO:0061024,GO:0061951,GO:0065007,GO:0070727,GO:0071071,GO:0071072,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0072659,GO:0080090,GO:0090150,GO:0090407,GO:0097164,GO:0098588,GO:0098791,GO:0098876,GO:0120009,GO:0120010,GO:1901351,GO:1901352,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:1903725,GO:1903726,GO:1990778,GO:2001245,GO:2001246
Exons4
Evalue4.27e-06
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota,38H26@33154|Opisthokonta,3NW62@4751|Fungi,3QK3I@4890|Ascomycota,3RTH1@4891|Saccharomycetes,3RZ24@4893|Saccharomycetaceae
Descriptionto Saccharomyces cerevisiae YKL091C and SEC14 (YMR079W)
Cds size303
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387058.3478436-CDS-H-akashiwo_Contig1034:164304..1643381681387058.3478436-CDS-H-akashiwo_Contig1034:164304..164338Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1034 164305..164338 -
1681387058.3619587-CDS-H-akashiwo_Contig1034:164595..1646971681387058.3619587-CDS-H-akashiwo_Contig1034:164595..164697Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1034 164596..164697 -
1681387058.3702133-CDS-H-akashiwo_Contig1034:164806..1649011681387058.3702133-CDS-H-akashiwo_Contig1034:164806..164901Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1034 164807..164901 -
1681387058.3783438-CDS-H-akashiwo_Contig1034:165002..1650741681387058.3783438-CDS-H-akashiwo_Contig1034:165002..165074Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1034 165003..165074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387058.3873837-UTR-H-akashiwo_Contig1034:165074..1651001681387058.3873837-UTR-H-akashiwo_Contig1034:165074..165100Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1034 165075..165100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1034.5.1prot_H-akashiwo_Contig1034.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1034 164305..165074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1034.5.1

>prot_H-akashiwo_Contig1034.5.1 ID=prot_H-akashiwo_Contig1034.5.1|Name=mRNA_H-akashiwo_Contig1034.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
MYSLSRQSSVAQQKYNLDQLEELEHWGHPGHLDEKQQKCLQQMRARVSSD
ELEHIKFQVESEDSALCRYLRARKFDVDAAYEMVKNCRKRRLADDVARCV
A
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mRNA from alignment at H-akashiwo_Contig1034:164305..165100-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1034.5.1 ID=mRNA_H-akashiwo_Contig1034.5.1|Name=mRNA_H-akashiwo_Contig1034.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=796bp|location=Sequence derived from alignment at H-akashiwo_Contig1034:164305..165100- (Heterosigma akashiwo CCMP452)
GGGGTTATTGGCATTCCACAGTGGCCATGTACAGTCTCAGCAGACAGAGT
AGCGTTGCTCAACAGAAGTATAATCTGGATCAGCTCGAAGAATTGGAGGT
GAGCCCCTTCGTTCTTGGGTGCCTTAACTAGCAGAGAAAACAAAAACCTG
TCGAATGTCATTCTTCATCATGTTTACGTACATGTATGTCATTCCACAGC
ACTGGGGCCATCCTGGTCATCTTGATGAGAAGCAGCAAAAATGTCTCCAA
CAGATGAGAGCAAGGGTGTCGTCAGATGAGTTAGAACACATTAAGTGAGC
CCAAACAGCCTTGTTATTATGAAAAAAAAAAATCCCAAACTTCTTCTTTG
GCGAACATGTTTGTCCCATCAAAACCTATTTGATTGATTTCTATTGTTAT
CAGATTTCAGGTTGAGAGCGAAGACAGTGCCTTGTGCAGATACTTGAGGG
CAAGAAAGTTTGATGTAGACGCTGCATATGAAATGGTCAAAAACTGTAGG
AAGAGGTGAGGAAAAAGTCAGATTGGGTATAATACCAAAAGTGCAGGCGC
CCGTTTTACATTGCCACCTTGTACAAGAGGATCAATTTGGTGGTCCGTAC
CCCCTACTTGTCACTAAAGGCAGCGAGTGGTCTCTGCAGACAAGAAATCT
CTCTTAGTCGTGCTCCGGAGGCAACGGAAATGGTGTGCTGCTGCAGGTCA
GCGCCGGCGCCCGTCAGTTCCGCCCTCCCCACCCACCCACCCACCCACCC
TCCCCTCCCCAGGCGGCTGGCGGACGACGTGGCGCGCTGCGTGGCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1034:164305..165100-

>mRNA_H-akashiwo_Contig1034.5.1 ID=mRNA_H-akashiwo_Contig1034.5.1|Name=mRNA_H-akashiwo_Contig1034.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig1034:164305..165100- (Heterosigma akashiwo CCMP452)
ATGTACAGTCTCAGCAGACAGAGTAGCGTTGCTCAACAGAAGTATAATCT
GGATCAGCTCGAAGAATTGGAGCACTGGGGCCATCCTGGTCATCTTGATG
AGAAGCAGCAAAAATGTCTCCAACAGATGAGAGCAAGGGTGTCGTCAGAT
GAGTTAGAACACATTAAATTTCAGGTTGAGAGCGAAGACAGTGCCTTGTG
CAGATACTTGAGGGCAAGAAAGTTTGATGTAGACGCTGCATATGAAATGG
TCAAAAACTGTAGGAAGAGGCGGCTGGCGGACGACGTGGCGCGCTGCGTG
GCA
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