mRNA_H-akashiwo_Contig1034.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1034.11.1
Unique NamemRNA_H-akashiwo_Contig1034.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1034.11.1 vs. uniprot
Match: A0A7S3XZ23_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ23_HETAK)

HSP 1 Score: 132 bits (332), Expect = 6.040e-38
Identity = 76/88 (86.36%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:   46 RAQAVGPAPGQRGASWASVVRGEGGRQPAAGPEGGEAELGSPGVHVVGAAPMAHGTSGAPAPRGGDREPARAQDVGAAELR-GPFSQV 306
            RAQAVGPAPGQRGASWASVVRG GGRQPA  PEGGEAELGSPGVHVVG A MAHG SGA APRGGDREPARAQDVGAA L  GP SQ 
Sbjct:    1 RAQAVGPAPGQRGASWASVVRGGGGRQPATRPEGGEAELGSPGVHVVGTALMAHGASGASAPRGGDREPARAQDVGAAALWCGPHSQA 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1034.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XZ23_HETAK6.040e-3886.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1034contigH-akashiwo_Contig1034:216959..217272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387058.1333258-CDS-H-akashiwo_Contig1034:216958..2172701681387058.1333258-CDS-H-akashiwo_Contig1034:216958..217270Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1034 216959..217270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1034.11.1prot_H-akashiwo_Contig1034.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1034 216959..217270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1034.11.1

>prot_H-akashiwo_Contig1034.11.1 ID=prot_H-akashiwo_Contig1034.11.1|Name=mRNA_H-akashiwo_Contig1034.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
CQPAGRSCGAEHGSHRAQAVGPAPGQRGASWASVVRGEGGRQPAAGPEGG
EAELGSPGVHVVGAAPMAHGTSGAPAPRGGDREPARAQDVGAAELRGPFS
QVEG
back to top

mRNA from alignment at H-akashiwo_Contig1034:216959..217272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1034.11.1 ID=mRNA_H-akashiwo_Contig1034.11.1|Name=mRNA_H-akashiwo_Contig1034.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=314bp|location=Sequence derived from alignment at H-akashiwo_Contig1034:216959..217272+ (Heterosigma akashiwo CCMP452)
TGCCAGCCGGCCGGCCGCAGCTGCGGGGCCGAGCACGGCAGTCACAGAGC
GCAGGCGGTGGGCCCGGCCCCCGGCCAGCGCGGAGCCTCCTGGGCGTCAG
TAGTCCGGGGGGAAGGAGGGCGCCAGCCAGCTGCTGGACCCGAGGGTGGC
GAGGCTGAGCTGGGCAGCCCTGGTGTGCATGTGGTGGGCGCAGCCCCCAT
GGCGCACGGAACCTCTGGGGCGCCGGCCCCGAGAGGTGGCGACCGCGAGC
CGGCACGCGCACAGGATGTTGGCGCTGCCGAGCTGCGCGGCCCCTTTTCG
CAGGTGGAGGGCGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1034:216959..217272+

>mRNA_H-akashiwo_Contig1034.11.1 ID=mRNA_H-akashiwo_Contig1034.11.1|Name=mRNA_H-akashiwo_Contig1034.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig1034:216959..217272+ (Heterosigma akashiwo CCMP452)
TGCCAGCCGGCCGGCCGCAGCTGCGGGGCCGAGCACGGCAGTCACAGAGC
GCAGGCGGTGGGCCCGGCCCCCGGCCAGCGCGGAGCCTCCTGGGCGTCAG
TAGTCCGGGGGGAAGGAGGGCGCCAGCCAGCTGCTGGACCCGAGGGTGGC
GAGGCTGAGCTGGGCAGCCCTGGTGTGCATGTGGTGGGCGCAGCCCCCAT
GGCGCACGGAACCTCTGGGGCGCCGGCCCCGAGAGGTGGCGACCGCGAGC
CGGCACGCGCACAGGATGTTGGCGCTGCCGAGCTGCGCGGCCCCTTTTCG
CAGGTGGAGGGC
back to top