mRNA_H-akashiwo_Contig1033.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1033.5.1
Unique NamemRNA_H-akashiwo_Contig1033.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1033.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1033contigH-akashiwo_Contig1033:150780..151353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categorychloroplast
Exons3
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.4618654-CDS-H-akashiwo_Contig1033:150779..1509011681387057.4618654-CDS-H-akashiwo_Contig1033:150779..150901Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 150780..150901 +
1681387057.4708352-CDS-H-akashiwo_Contig1033:151017..1511551681387057.4708352-CDS-H-akashiwo_Contig1033:151017..151155Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 151018..151155 +
1681387057.4800618-CDS-H-akashiwo_Contig1033:151268..1513531681387057.4800618-CDS-H-akashiwo_Contig1033:151268..151353Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 151269..151353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1033.5.1prot_H-akashiwo_Contig1033.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1033 150780..151353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1033.5.1

>prot_H-akashiwo_Contig1033.5.1 ID=prot_H-akashiwo_Contig1033.5.1|Name=mRNA_H-akashiwo_Contig1033.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=115bp
MVAFAPVLYLFLSLAFQASCFKVASAKRFRQHKDLQSFTRRSQLAMATEK
NAVDIKTSVEVPVEAKQFASCMGTAHAITGAWGFVGRSQKFGKVEIETFN
IMTTRMFRDIDQGK*
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mRNA from alignment at H-akashiwo_Contig1033:150780..151353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1033.5.1 ID=mRNA_H-akashiwo_Contig1033.5.1|Name=mRNA_H-akashiwo_Contig1033.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=574bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:150780..151353+ (Heterosigma akashiwo CCMP452)
ATGGTCGCATTTGCTCCTGTATTATATTTGTTTTTATCTCTTGCATTTCA
AGCTTCCTGTTTCAAGGTTGCATCCGCAAAACGTTTTCGGCAGCATAAAG
ATTTGCAATCATTCACGAGAAGGTAGGCTGGGTGAGCAGTAAAATGCGGA
CAGCAACCCAATGTGCTGAATACATTAAAAGATCAGGTTGCGAGCATATG
CATGAATGATTCTCCATAATCTATACTGGCATGAACAGATCGCAACTTGC
CATGGCCACAGAGAAAAATGCGGTCGACATCAAAACGAGTGTTGAAGTCC
CTGTCGAGGCAAAGCAGTTTGCCAGCTGCATGGGAACAGCTCATGCAATA
ACTGGGGCCTGGGGATTCGTTGGGAGGTACAGCTGGCTTCTACTTTCTCC
TTGAGCTGACCACTGGGTCTTTTTTGCTCGCCGCCTAATGTCAACTTTGA
TAGCACCTTATTTTTATCCATCCCAAAATTCTTTTGTAGATCTCAAAAGT
TTGGAAAGGTGGAAATAGAAACTTTCAACATCATGACCACCAGAATGTTT
CGAGATATTGATCAAGGAAAGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1033:150780..151353+

>mRNA_H-akashiwo_Contig1033.5.1 ID=mRNA_H-akashiwo_Contig1033.5.1|Name=mRNA_H-akashiwo_Contig1033.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=345bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:150780..151353+ (Heterosigma akashiwo CCMP452)
ATGGTCGCATTTGCTCCTGTATTATATTTGTTTTTATCTCTTGCATTTCA
AGCTTCCTGTTTCAAGGTTGCATCCGCAAAACGTTTTCGGCAGCATAAAG
ATTTGCAATCATTCACGAGAAGATCGCAACTTGCCATGGCCACAGAGAAA
AATGCGGTCGACATCAAAACGAGTGTTGAAGTCCCTGTCGAGGCAAAGCA
GTTTGCCAGCTGCATGGGAACAGCTCATGCAATAACTGGGGCCTGGGGAT
TCGTTGGGAGATCTCAAAAGTTTGGAAAGGTGGAAATAGAAACTTTCAAC
ATCATGACCACCAGAATGTTTCGAGATATTGATCAAGGAAAGTAA
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