mRNA_H-akashiwo_Contig1033.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1033.4.1
Unique NamemRNA_H-akashiwo_Contig1033.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A7S3XZI3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZI3_HETAK)

HSP 1 Score: 320 bits (821), Expect = 1.460e-108
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 3
Query:  399 DEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            DEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD
Sbjct:    1 DEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 161          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A3R7WGF1_9STRA (Cnd1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WGF1_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.580e-77
Identity = 128/231 (55.41%), Postives = 168/231 (72.73%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            SVR+N++VA+GDL FRFPN +EPWTS +YARLRD    VR   ++VLTHL+LNDMVKVKGQVSEIAL L DE++R+  +A+ FF EL++R NNP+YN+LPD +G LS    +  ++F+ I  +LL FI KDKQ ESLVEKLC RF  T ++   RD AYCL+ L LN++ L KLV L KL+K  L DD V++ F+++  KAKKFSK E +E + E E V+   H+G + DD
Sbjct:   75 SVRSNIVVALGDLSFRFPNLVEPWTSHIYARLRDINVNVRKNTIMVLTHLILNDMVKVKGQVSEIALSLVDEDKRICELAKLFFHELSKRGNNPIYNMLPDTIGRLSTSATLSKKSFQEITKFLLGFIHKDKQTESLVEKLCHRFVTTAEVAHWRDLAYCLANLSLNDKSLKKLVELRKLFKTCLVDDGVFECFQQLVSKAKKFSKAETKETLDELEHVINAIHSGENLDD 305          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A6G0XYQ8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYQ8_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.550e-75
Identity = 130/231 (56.28%), Postives = 176/231 (76.19%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            SVR+N++VA+GDL FRFPN +EPWTS +YARLRD    VR   ++VLTHL+LNDMVKVKGQ+SEIAL L DE++R+  +A+ FF EL++R NNP+YN+LPD +G LS   ++  ++F+ I  +LL FI+KDKQAESLVEKLCQRF  T ++ Q RDFAYCLS L  N+R L KL+ L K++K  L DD VY+ F+++  KAKKF K E++E++ E ER+++  H+G + DD
Sbjct:  949 SVRSNIVVALGDLSFRFPNLVEPWTSHIYARLRDIDVNVRKNTIMVLTHLILNDMVKVKGQISEIALSLVDEDKRICDLAKLFFHELSKRGNNPIYNMLPDTIGRLSTSSNLSKKSFQEITKFLLGFIQKDKQAESLVEKLCQRFVTTAEVTQWRDFAYCLSNLPFNDRALKKLIELRKMFKTCLVDDGVYESFQQIISKAKKFCKAEMKESLDEIERMIEVMHSGENVDD 1179          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A485LA88_9STRA (Aste57867_18260 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA88_9STRA)

HSP 1 Score: 256 bits (653), Expect = 6.710e-74
Identity = 129/231 (55.84%), Postives = 173/231 (74.89%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            SVR+N++VA+GDL FRFPN +EPWTS +YARLRD    VR   ++VLTHL+LNDMVKVKGQ+SEIAL L DE++R+  +A+ FF EL++R NNP+YN+LPD +G LS    +  ++F+ I  +LL FI+KD+Q ESLVEKLCQRF  T ++ Q RDFAYCL+ L LNE+ + KLV L KL+K  L D  V++ F++V  KAKKF KPE+++ + E ERV+   H+G + DD
Sbjct:  948 SVRSNIVVALGDLSFRFPNLVEPWTSHIYARLRDIDVNVRKNTIMVLTHLILNDMVKVKGQISEIALSLVDEDKRICDLAKLFFHELSKRGNNPIYNMLPDTIGRLSTSATLSKKSFQEITKFLLGFIQKDRQTESLVEKLCQRFVTTAEVAQWRDFAYCLANLSLNEKAVKKLVELRKLFKTCLVDKAVFESFQQVVVKAKKFCKPEMKDTLDELERVIHAIHSGENVDD 1178          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A7S1VJD1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJD1_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.170e-73
Identity = 119/218 (54.59%), Postives = 159/218 (72.94%), Query Frame = 3
Query:  186 VSVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWE 839
             S+RAN +VA+GD  FRFPNELEP+T R+YA LRD +  VR   L+VLTHL+LNDMVKVKGQV EIALCL+DE+ R+  ++R  F EL++R+NNP+YNLLPD++  LS +  +  E+F  I+S+LL FIKK++Q E LV+KLCQRF    +  Q  D AYC+SQL +NE+ +  L    KLYKD L D+ V + F  + KK KKF+KPE+++ + EWE
Sbjct:    7 TSLRANTVVALGDHAFRFPNELEPYTPRLYANLRDGSTTVRRHTLMVLTHLILNDMVKVKGQVCEIALCLKDEDPRICDLSRLLFHELSKRSNNPIYNLLPDIVSQLS-QLAIRQESFRTIMSFLLSFIKKERQNEMLVDKLCQRFPKCDNFAQAADLAYCISQLKINEKSIKCLTDNFKLYKDMLADEDVQKSFNSILKKTKKFAKPEMKDCLEEWE 223          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A067CDW8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDW8_SAPPC)

HSP 1 Score: 253 bits (647), Expect = 3.640e-73
Identity = 127/231 (54.98%), Postives = 168/231 (72.73%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            SVR N++VA+GDL FRFPN +EPWTS +YARLRD    VR   ++VLTHL+LNDMVKVKGQ+SEIALCL D+E R++ +A+ FF EL++R NNP+YN+LPD +G LS   D+  E+F  I  +L+ FI+KDKQ ESLV+K+CQRF  T +  Q RD A+CLS L  NE+ + KL+   K++K  L DD VY+ F ++  K KKF KPEL+E V E ERV+Q   A  +++D
Sbjct:  955 SVRCNIVVALGDLSFRFPNLVEPWTSHIYARLRDIDTNVRKNTIMVLTHLILNDMVKVKGQISEIALCLVDDEARIKDLAKLFFHELSKRGNNPIYNMLPDTIGRLST-SDLSKESFREITKFLIGFIQKDKQNESLVDKMCQRFVTTTEKAQWRDLAFCLSNLSFNEKAIKKLLEQKKVFKQCLQDDTVYESFEQIVAKCKKFCKPELKETVDELERVIQSLRANENEED 1184          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A1Y1HVC9_KLENI (Chromosome condensation complex Condensin subunit D2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HVC9_KLENI)

HSP 1 Score: 253 bits (646), Expect = 8.360e-73
Identity = 126/230 (54.78%), Postives = 165/230 (71.74%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDD 878
            +VR N +VA+GDL FRFPN +EPWT  VYARLRD +  VR   ++VLTHL+LNDM+KVKG +S +A+CL DE+ER+R + + FF EL+++ NNP+YNLLPD+L  LSA  +V  E+F  IL Y+L FI+KDKQ E L+EKLC RF  T ++ Q RD AYCL+QL   +R L KLV   K Y+D L DD V +HFR +  KAKKF+KPE++ AV E+E+ L   H    +D
Sbjct: 1155 AVRCNCVVALGDLAFRFPNLVEPWTEHVYARLRDESVLVRKNTVMVLTHLILNDMMKVKGHISSMAMCLEDEDERIRDLTKLFFHELSKKGNNPIYNLLPDMLSRLSADANVPPESFRAILEYMLGFIEKDKQTEGLIEKLCNRFPQTTEVKQWRDIAYCLAQLKFTDRGLKKLVEHFKSYQDTLFDDEVVEHFRTIISKAKKFAKPEMKAAVDEFEKQLTATHVEKKED 1384          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A024UUV2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUV2_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.540e-72
Identity = 129/231 (55.84%), Postives = 169/231 (73.16%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            SVR+N++VA+GDL FRFPN +EPWTS +YARLRD    VR   ++VLTHL+LNDMVKVKGQVSEIAL L DE++R+  +A+ FF EL++R NNP+YN+LPD +G LS    +  ++F+ I  YLL FI+KDKQ ESLVEKLC RF  T ++   RD AYCLS L LN++ L KLV L K++K  L DD V++ F+++  KAKKFSK E +E + E E V+   H+G + DD
Sbjct:  946 SVRSNIVVALGDLSFRFPNLVEPWTSHIYARLRDVNVNVRKNTIMVLTHLILNDMVKVKGQVSEIALSLVDEDKRICELAKLFFHELSKRGNNPIYNMLPDTIGRLSTSTTLSKKSFQEITKYLLGFIQKDKQTESLVEKLCHRFVTTAEVTHWRDLAYCLSNLTLNDKSLKKLVELRKMFKSCLVDDGVFECFQQLVAKAKKFSKAEAKETLDELENVINAIHSGENIDD 1176          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A7S2DPP1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPP1_9STRA)

HSP 1 Score: 241 bits (614), Expect = 4.050e-72
Identity = 118/231 (51.08%), Postives = 166/231 (71.86%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            SVR+N+MVAMGDL  RFPN++EP+T  +YA+L D    VR ++L+VLTHL+LNDM+KVKGQVSE+A CL D++E  + +AR FF EL++R NNP+YNL+PD++  LS R  VD   F  I+++L+ F+  DK + SLVEKLC RF++  ++   +D AYCL+QL +N++ LH+L AL + YKD L D+ VYQ F+++A KAKK  K E +E   EW   L+   +G D +D
Sbjct:  206 SVRSNVMVAMGDLASRFPNKIEPYTHHLYAKLHDDDAKVRTRSLMVLTHLILNDMIKVKGQVSEMACCLEDDDESTKDLARIFFTELSKRNNNPIYNLMPDLVSRLSKRDRVDTPAFRRIMTFLMNFVTSDKHSASLVEKLCSRFSSCDEVTHAQDMAYCLAQLRMNDKVLHRLDALFRTYKDQLFDEDVYQSFKQLALKAKKLPKQEDKELAAEWAAKLKAVRSGMDPED 436          
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Match: A0A397DUM4_9STRA (Cnd1 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DUM4_9STRA)

HSP 1 Score: 248 bits (634), Expect = 8.910e-72
Identity = 128/231 (55.41%), Postives = 168/231 (72.73%), Query Frame = 3
Query:  189 SVRANLMVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMVKVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTLSARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRDFAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSKPELREAVTEWERVLQRHHAGADDDD 881
            SVR+N++VA+GDL FRFPN +EPWTS +YARLRD    VR   ++VLTHL+LNDMVKVKGQVSEIAL L DE++R+  +A+ FF EL++R NNP+YN+LPD +G LS    +  ++F+ I  +LL FI KDKQ ESLVEKLC RF  T ++   RD AYCL+ L LN++ L KLV L KL+K  L DD V++ F+++  KAKKFSK E +E + E E V+   H+G + DD
Sbjct:  715 SVRSNIVVALGDLSFRFPNLVEPWTSHIYARLRDINVNVRKNTIMVLTHLILNDMVKVKGQVSEIALSLVDEDKRICELAKLFFHELSKRGNNPIYNMLPDTIGRLSTSATLSKKSFQEITKFLLGFIHKDKQTESLVEKLCHRFVTTAEVAHWRDLAYCLANLSLNDKSLKKLVELRKLFKTCLVDDGVFECFQQLVSKAKKFSKAETKETLDELEHVINAIHSGENLDD 945          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1033.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XZI3_HETAK1.460e-108100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3R7WGF1_9STRA1.580e-7755.41Cnd1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A6G0XYQ8_9STRA1.550e-7556.28Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LA88_9STRA6.710e-7455.84Aste57867_18260 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1VJD1_9STRA1.170e-7354.59Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A067CDW8_SAPPC3.640e-7354.98Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1Y1HVC9_KLENI8.360e-7354.78Chromosome condensation complex Condensin subunit ... [more]
A0A024UUV2_9STRA1.540e-7255.84Uncharacterized protein n=4 Tax=Aphanomyces invada... [more]
A0A7S2DPP1_9STRA4.050e-7251.08Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A397DUM4_9STRA8.910e-7255.41Cnd1 domain-containing protein (Fragment) n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1033contigH-akashiwo_Contig1033:58527..61445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008861151.1
Preferred nameNCAPD2
PFAMsCnd1,Cnd1_N,Cohesin_HEAT
Model size883
Max annot lvl2759|Eukaryota
KEGG koko:K06677
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000797,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035327,GO:0040029,GO:0042393,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045120,GO:0045132,GO:0045143,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1902679,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
Exons6
Evalue1.53e-71
EggNOG OGsCOG5098@1|root,KOG0414@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-14_002720.1
Descriptionmitotic chromosome condensation
Cds size675
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1033.4.1prot_H-akashiwo_Contig1033.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1033 58733..61445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.5503306-UTR-H-akashiwo_Contig1033:58526..587321681387057.5503306-UTR-H-akashiwo_Contig1033:58526..58732Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1033 58527..58732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.5628886-CDS-H-akashiwo_Contig1033:58732..587951681387057.5628886-CDS-H-akashiwo_Contig1033:58732..58795Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 58733..58795 +
1681387057.5723257-CDS-H-akashiwo_Contig1033:59918..600081681387057.5723257-CDS-H-akashiwo_Contig1033:59918..60008Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 59919..60008 +
1681387057.5820425-CDS-H-akashiwo_Contig1033:60165..603201681387057.5820425-CDS-H-akashiwo_Contig1033:60165..60320Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 60166..60320 +
1681387057.5917597-CDS-H-akashiwo_Contig1033:60538..606241681387057.5917597-CDS-H-akashiwo_Contig1033:60538..60624Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 60539..60624 +
1681387057.6015227-CDS-H-akashiwo_Contig1033:61016..612041681387057.6015227-CDS-H-akashiwo_Contig1033:61016..61204Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 61017..61204 +
1681387057.6110682-CDS-H-akashiwo_Contig1033:61352..614451681387057.6110682-CDS-H-akashiwo_Contig1033:61352..61445Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1033 61353..61445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1033.4.1

>prot_H-akashiwo_Contig1033.4.1 ID=prot_H-akashiwo_Contig1033.4.1|Name=mRNA_H-akashiwo_Contig1033.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=225bp
MVAMGDLCFRFPNELEPWTSRVYARLRDPAPAVRAQALLVLTHLVLNDMV
KVKGQVSEIALCLRDEEERLRRMARHFFQELAQRANNPVYNLLPDVLGTL
SARKDVDNETFEYILSYLLKFIKKDKQAESLVEKLCQRFAATHDLDQKRD
FAYCLSQLHLNERCLHKLVALLKLYKDFLHDDRVYQHFREVAKKAKKFSK
PELREAVTEWERVLQRHHAGADDDD
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mRNA from alignment at H-akashiwo_Contig1033:58527..61445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1033.4.1 ID=mRNA_H-akashiwo_Contig1033.4.1|Name=mRNA_H-akashiwo_Contig1033.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2919bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:58527..61445+ (Heterosigma akashiwo CCMP452)
TTTCCTTTTCGGTTTCTTTACATGCAGTTGTACTATATTTCGATGACCAA TTTGTACGATGAAATATCTCCTGTCCCTGATGACGCATTGAGTGTGCCGT TGTGATCCGGCGAGAACATGATAGCGGCCCCTGCTAATAACGGCCTTCCC CACCCCCCTCATCGTTCAACACTGCCCCCTGGAAGGTCTCGGTTCGTGCC AACCTGATGGTGGCGATGGGGGACCTCTGCTTCCGTTTCCCCAACGAGCT CGAGCCGTGGACCTCCCGGGTAATCAATGAATGCCCCCCCCTTCTGGCCA GTGTGTTGTTTTGTCTACATTTATTCATGCGCAATGCCACCCTCACTACC TGGCAGTGACACACTTCACTGCTGTTGTATACAGAGCCAGAGTTCTAGCA ACCTCATTGGAGTAGTATCTTTGGTATAGGAGTGACCTCTGCTATACCCC TGCAGCCCTAGACTGTGCGTCGGTGTGGACAGTTTTTGTCAATGTTCCAG GTATCCATGGCTCTGCCTTGCTTCCACCACTCCAGACTTTCTTCTCCAAG ACTCTCTCTTTCAGTCTCTCAATCTCCTCCCTTCTGTCTTCATTCAGACC AGATTACTGGGCACTATACTGTACGATGATACCAGACCTCAAAGGTAGAT TTGGTATGCCCATTCAATGAGATCCTTAGCGTTCCCAAAGCAATGAATCC GGGGGGAAGTCTTCCTGACTATTTCGCAACAGGCTCATACCTCTTGAATC AAAAATACAGAAAGAGCCACAGATGAGACAAAACACAATTACTTGTTATA CTCACAACTGTACACAACAATAAATTAGAGCGCTTAGATTATATCAAAAA GTCTGCATAGCCATGTGAATAGGATGAAAGGCCTCAGAGGGCCATTGATG AAGCTCCTACAGAATTGAGACGAAAAAAGCCCACTGAAGTCCAGGAAGCG GCTTTGCGGTCTTTTTGAGTACGGAGAGTCCCATGTACGTACACCTGTTC ACCCTCCTTCCCCTCCCCCTCTCGCCGGACCCTGCCGCAAGCTCCTGTGC AAAGGGCACAGCCCCAGCCCCGCCCCGCATCGGCGGAGGAGAGGGCCCGG CTTCCGCTCGCGCCACGGCGACCCGGAGCCTTCTCCCCTCCCCTCCACTC CTCGCCAACGAACCACACTATATATCCTCATCCTCATCACCACCACCACC ACCACAACACAGCAGCGGCGACAGCTGTGTCGGACAACTTTTTCTAACTC TGGTGGAGATGTTTAAGGAACGCAGTATGCTGTATTTTTGCTCGGTGCGG GCTTTAACCTTTTAGGAGCATATACATACTTCATTCCTTGGTGTTCATCG CCGGAAGAACCGGTCGCCCTTTTCCCATCGGCCTATACCCAGGTGTACGC CCGGCTGAGGGACCCCGCGCCGGCGGTGCGCGCCCAGGCCCTGCTGGTCC TCACGCACCTCGTGCTCAACGACATGGTCAAGGCAAGCCCCTTCCCAGAG TCCCCCCCCCCCTCGCCCCCCCACGCCGCCACACCGCCCCGCGCCCGCCC GGGGCCCCCTTCCCAGAGTCCCCCCCTTCCCCCCGGGCGCCCCTGCCCCT TGTCCCCCCGGGGGTCCCCCGGCGGCCCGGGGGGGGCAGGTGAAGGGCCA GGTGAGCGAGATCGCGCTGTGCCTGCGCGACGAGGAGGAGCGGCTGCGCC GCATGGCCCGGCACTTCTTCCAGGAGCTGGCCCAGCGCGCGAACAACCCC GTGTACAACCTGCTGCCGGACGTCCTGGGCACGCTCTCCGCCAGGTGCTG GGGGGGGAGGGTCCTCTGCTTTGTTGTCTTCTATAGACCTGTGTGGGTCC TGGGAGGGAACACGTGAACGGAATGCATACATACAACGGCATTTAACACT TCTGGGCTATAACGATGCAAATCACGATGCATATGACATGTGCGCTGTTT GTCTCCTTTTCCCGTTGCCTTTCTGTCTTCTTCCGAACAATTTCTCACTC TCCATGGTGCAGGAAGGATGTGGACAACGAAACCTTTGAGTACATCCTCT CTTACCTGCTCAAGTTCATCAAAAAGGACAAGCAGGCTGAATCTCTAGGT GAATGGGGCGCACCAGGGATCCTGGGATCAACTTTCATTCTTCATCATGA TCGCATTTCCTACAACAAAGTTGTCTTGGGCGCTGTTTATAACAGTATTT ATTAGCATCATTTTTTGAGGGTGATGATGATGATGATGGTTTCGTCTACT ATATATGTTATTCAATTTTCAGTTTTTTGGATGACATGTGCACTCGTGAG TATTTCATCGTCTTATAAAGCAAATATTCATACATAGTGCAGTGGGCTTC CCCTCTCATTCATTCTGCTGCACAAGGTGAGCGACGACGCTCGCTCTCAC CCTCCCCGCGGTATAGTGTGCCCAGCCCCCCCCCCCCTTCACCGCACCGC ACCCCACCGCACCCCCACCCCTCTCCCTCCGGCGGGGCAGTGGAGAAGCT CTGCCAGCGGTTCGCCGCCACCCACGACCTGGACCAGAAGCGCGACTTCG CCTACTGCCTCTCGCAGCTGCACCTGAACGAGCGCTGCCTGCACAAGCTC GTGGCGCTGCTGAAGCTGTACAAGGACTTCCTCCACGACGACCGCGTCTA CCAGCACTTCCGGGAGGTCGCCAAGAAGGTCCGTGCGTGTCTGTGTGTGT GTGTGTCCCGGGTCAGACCTGGTGGCCGGGGTGTGTGTGTGTGTGTGTGC TGTTTTTTCCACACGTGCCCCACCGCCCCGCGCCGCCGACCCCCCCTCCC CATCGCGGCGGCGGCGGCGGCGGCAGGCCAAGAAGTTCAGCAAGCCGGAG CTGCGGGAGGCGGTCACGGAGTGGGAGCGGGTGCTGCAGCGGCACCACGC GGGCGCGGACGACGACGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1033:58527..61445+

>mRNA_H-akashiwo_Contig1033.4.1 ID=mRNA_H-akashiwo_Contig1033.4.1|Name=mRNA_H-akashiwo_Contig1033.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=675bp|location=Sequence derived from alignment at H-akashiwo_Contig1033:58527..61445+ (Heterosigma akashiwo CCMP452)
ATGGTGGCGATGGGGGACCTCTGCTTCCGTTTCCCCAACGAGCTCGAGCC
GTGGACCTCCCGGGTGTACGCCCGGCTGAGGGACCCCGCGCCGGCGGTGC
GCGCCCAGGCCCTGCTGGTCCTCACGCACCTCGTGCTCAACGACATGGTC
AAGGTGAAGGGCCAGGTGAGCGAGATCGCGCTGTGCCTGCGCGACGAGGA
GGAGCGGCTGCGCCGCATGGCCCGGCACTTCTTCCAGGAGCTGGCCCAGC
GCGCGAACAACCCCGTGTACAACCTGCTGCCGGACGTCCTGGGCACGCTC
TCCGCCAGGAAGGATGTGGACAACGAAACCTTTGAGTACATCCTCTCTTA
CCTGCTCAAGTTCATCAAAAAGGACAAGCAGGCTGAATCTCTAGTGGAGA
AGCTCTGCCAGCGGTTCGCCGCCACCCACGACCTGGACCAGAAGCGCGAC
TTCGCCTACTGCCTCTCGCAGCTGCACCTGAACGAGCGCTGCCTGCACAA
GCTCGTGGCGCTGCTGAAGCTGTACAAGGACTTCCTCCACGACGACCGCG
TCTACCAGCACTTCCGGGAGGTCGCCAAGAAGGCCAAGAAGTTCAGCAAG
CCGGAGCTGCGGGAGGCGGTCACGGAGTGGGAGCGGGTGCTGCAGCGGCA
CCACGCGGGCGCGGACGACGACGAC
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