mRNA_H-akashiwo_Contig1030.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1030.8.1
Unique NamemRNA_H-akashiwo_Contig1030.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 127 bits (319), Expect = 2.850e-32
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM 258
            LRSL+  KSVGPDGVSPR+LK CA +L   LT LFQK+ +AAEFP SWKVARVTPVHKK+    P+NYRP+SV+PTLATTFER+LM
Sbjct:  320 LRSLDVNKSVGPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVHKKEDANLPKNYRPISVLPTLATTFERVLM 405          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 125 bits (314), Expect = 1.030e-31
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM 258
            LRSL+  KSVGPDGVSPR+LK CA +L   LT LFQK+ +AAEFP SWKVARVTPV+KK+  + P+NYRP+SV+PTLATTFER+LM
Sbjct:  320 LRSLDVNKSVGPDGVSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVYKKEDASLPKNYRPISVLPTLATTFERVLM 405          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A0P4VX79_SCYOL (Uncharacterized protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VX79_SCYOL)

HSP 1 Score: 87.8 bits (216), Expect = 2.410e-18
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERIL 255
            L +++  K+ GPD VSPRLLKHCA+EL+  LT +F    R  ++P  WK ARV PVHKK+  ++P NYRP+S++  +    E+I+
Sbjct:  374 LGAVDVGKATGPDDVSPRLLKHCARELSAPLTTVFTSCLREKKWPSVWKEARVVPVHKKNSRSEPNNYRPISLLSVMGKLLEKIV 458          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A093H5F3_STRCA (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=2 Tax=Struthio camelus australis TaxID=441894 RepID=A0A093H5F3_STRCA)

HSP 1 Score: 80.1 bits (196), Expect = 1.210e-17
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM 258
            L  L+  KS+GPDG+ PR+L+  A  LAR L+ +F++  R  E P+ WK A VTPV KK +  DPRNYRPVS+        E++L+
Sbjct:   12 LGQLDTHKSMGPDGMHPRVLRELADVLARPLSIIFERSWRLGEVPEDWKKANVTPVFKKGKKEDPRNYRPVSLTSIPGKVMEQLLL 97          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A093QWU2_9PASS (Uncharacterized protein (Fragment) n=1 Tax=Manacus vitellinus TaxID=328815 RepID=A0A093QWU2_9PASS)

HSP 1 Score: 79.7 bits (195), Expect = 1.290e-17
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM 258
            L  L+  KS+GPDG+ PR+++  A+EL + L+ ++Q+     E P  WK+A VTP+HKK    DP NYRP+S+ P      E+I++
Sbjct:    1 LSHLDPHKSMGPDGIHPRVMRELAEELTKLLSIIYQQSWLTVEVPDDWKLANVTPIHKKGCKEDPGNYRPISLTPVPGKVMEQIIL 86          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A7D9K2E7_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K2E7_PARCT)

HSP 1 Score: 85.1 bits (209), Expect = 2.000e-17
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERIL 255
            L +L+  K+ GPDG+ PRLLK C+KE++ SL  LF K       P  WK A V P+HKKDRV    NYRP+S++  ++   ER L
Sbjct:   11 LNNLDTSKAYGPDGIPPRLLKECSKEISPSLCSLFNKSLATGRVPVEWKQANVIPIHKKDRVEPVTNYRPISLLSIVSKVLERSL 95          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A099Z4N0_TINGU (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=3 Tax=Tinamus guttatus TaxID=94827 RepID=A0A099Z4N0_TINGU)

HSP 1 Score: 79.3 bits (194), Expect = 2.080e-17
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM 258
            LR+L+  KS+GPDG+ PR+L   A+ +A+ L+ +F++  R  E P+ WK A VTPV KK R  DP NYRPVS+        ER+++
Sbjct:   12 LRNLDAHKSMGPDGMHPRVLWKLAEVIAKLLSIIFERSWRTGEMPEDWKKANVTPVFKKGRKEDPGNYRPVSLTSVPGKVMERLVL 97          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: UPI001E1D1C75 (uncharacterized protein LOC123507079 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D1C75)

HSP 1 Score: 85.1 bits (209), Expect = 2.120e-17
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERIL 255
            L+SL+E K+VGP  +SP +L+ CA ELAR LT LF      + +P+ WK + V P+HKK+   + +NYRPVS++P L+   E I+
Sbjct:  753 LKSLDENKAVGPQDISPHVLRQCAAELARPLTSLFNHCLATSTWPEMWKGSSVVPLHKKNSKAEAKNYRPVSLLPVLSKVLETIV 837          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A093FUP1_DRYPU (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Dryobates pubescens TaxID=118200 RepID=A0A093FUP1_DRYPU)

HSP 1 Score: 79.0 bits (193), Expect = 2.450e-17
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM 258
            L  L+  KSVGPDG+ PR+L+  A ELA+ L+ +F +    AE P  WK A V P+HKK R+ +P NYRPVS+        E+I++
Sbjct:   12 LSHLDTHKSVGPDGIHPRVLRELADELAKPLSIIFLQSWLTAEVPDDWKRANVVPIHKKGRMEEPGNYRPVSLTSVPGKVMEQIMV 97          
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Match: A0A099YZH7_TINGU (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=4 Tax=Tinamus guttatus TaxID=94827 RepID=A0A099YZH7_TINGU)

HSP 1 Score: 78.6 bits (192), Expect = 2.890e-17
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKVARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM 258
            LR L+  KS+GPDG+ PR+L+  A+ +A+ L+ +F++  R  E P+ WK A VTPV KK +  DP +YRPVS+        ER+++
Sbjct:    5 LRKLDTHKSMGPDGMHPRVLRELAEVIAKPLSIIFERSWRTGEVPEDWKKANVTPVFKKGKKEDPGSYRPVSLTSVPGKVMERLIL 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8N4_HETAK2.850e-3272.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8Z6_HETAK1.030e-3170.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P4VX79_SCYOL2.410e-1847.06Uncharacterized protein n=1 Tax=Scylla olivacea Ta... [more]
A0A093H5F3_STRCA1.210e-1746.51RNA-directed DNA polymerase from mobile element jo... [more]
A0A093QWU2_9PASS1.290e-1741.86Uncharacterized protein (Fragment) n=1 Tax=Manacus... [more]
A0A7D9K2E7_PARCT2.000e-1747.06Reverse transcriptase domain-containing protein n=... [more]
A0A099Z4N0_TINGU2.080e-1745.35RNA-directed DNA polymerase from mobile element jo... [more]
UPI001E1D1C752.120e-1745.88uncharacterized protein LOC123507079 n=1 Tax=Portu... [more]
A0A093FUP1_DRYPU2.450e-1745.35RNA-directed DNA polymerase from mobile element jo... [more]
A0A099YZH7_TINGU2.890e-1743.02RNA-directed DNA polymerase from mobile element jo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:293446..293703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog13735.ENSPSIP00000001644
PFAMsDUF1891,RVT_1
Model size258
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.12e-16
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A7X5@33154|Opisthokonta,3BTPZ@33208|Metazoa,3D9N3@33213|Bilateria,48H7G@7711|Chordata,49FFY@7742|Vertebrata
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size258
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.0394685-CDS-H-akashiwo_Contig1030:293445..2937031681387057.0394685-CDS-H-akashiwo_Contig1030:293445..293703Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 293446..293703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.8.1prot_H-akashiwo_Contig1030.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1030 293446..293703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1030.8.1

>prot_H-akashiwo_Contig1030.8.1 ID=prot_H-akashiwo_Contig1030.8.1|Name=mRNA_H-akashiwo_Contig1030.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=86bp
LRSLNEPKSVGPDGVSPRLLKHCAKELARSLTDLFQKVTRAAEFPKSWKV
ARVTPVHKKDRVTDPRNYRPVSVIPTLATTFERILM
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mRNA from alignment at H-akashiwo_Contig1030:293446..293703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1030.8.1 ID=mRNA_H-akashiwo_Contig1030.8.1|Name=mRNA_H-akashiwo_Contig1030.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=258bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:293446..293703+ (Heterosigma akashiwo CCMP452)
CTCCGCTCTCTGAATGAGCCAAAGTCAGTTGGCCCTGATGGGGTCAGTCC GCGTCTCCTCAAGCACTGTGCAAAAGAGCTGGCTCGCTCGCTGACTGATC TGTTCCAGAAAGTGACCAGGGCAGCAGAGTTCCCCAAGAGTTGGAAGGTG GCGAGGGTCACACCTGTCCACAAAAAAGACAGGGTGACAGACCCTCGAAA TTATCGGCCTGTTTCAGTGATCCCAACTCTGGCCACTACATTTGAGAGAA TTCTCATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1030:293446..293703+

>mRNA_H-akashiwo_Contig1030.8.1 ID=mRNA_H-akashiwo_Contig1030.8.1|Name=mRNA_H-akashiwo_Contig1030.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=258bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:293446..293703+ (Heterosigma akashiwo CCMP452)
CTCCGCTCTCTGAATGAGCCAAAGTCAGTTGGCCCTGATGGGGTCAGTCC
GCGTCTCCTCAAGCACTGTGCAAAAGAGCTGGCTCGCTCGCTGACTGATC
TGTTCCAGAAAGTGACCAGGGCAGCAGAGTTCCCCAAGAGTTGGAAGGTG
GCGAGGGTCACACCTGTCCACAAAAAAGACAGGGTGACAGACCCTCGAAA
TTATCGGCCTGTTTCAGTGATCCCAACTCTGGCCACTACATTTGAGAGAA
TTCTCATG
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