mRNA_H-akashiwo_Contig1030.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1030.7.1
Unique NamemRNA_H-akashiwo_Contig1030.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1030.7.1 vs. uniprot
Match: W2QFY1_PHYPN (Mur_ligase_M domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2QFY1_PHYPN)

HSP 1 Score: 51.2 bits (121), Expect = 8.200e-6
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    7 VEALRAAAAPVQITGESGSVKETISTLLEKL--------VHPDEDVVVICGSTFLMSDARDALGLSYPSDA 195
            +E +  A A     GE   V ETIST+ + +           D++VVV+CGS FLM++AR ALGL  P D+
Sbjct:  465 LEEINVALANATAEGEQARVYETISTIKDGVNAALAASRASSDDEVVVVCGSVFLMAEARQALGLKEPIDS 535
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BLAST of mRNA_H-akashiwo_Contig1030.7.1 vs. uniprot
Match: A0A8J5MHS4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MHS4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.910e-5
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    7 VEALRAAAAPVQITGESGSVKETISTLLEKL--------VHPDEDVVVICGSTFLMSDARDALGLSYPSDA 195
            +E +  A A     GE   V ETIST+ + +           D++VVV+CGS FLM++AR ALGL  P D+
Sbjct:  473 LEEINLALANATAEGEMPRVYETISTIKDGVNAALAASRASSDDEVVVVCGSVFLMAEARQALGLKEPIDS 543
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BLAST of mRNA_H-akashiwo_Contig1030.7.1 vs. uniprot
Match: A0A2P4YSC5_9STRA (Folylpolyglutamate synthase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YSC5_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 5.370e-5
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    7 VEALRAAAAPVQITGESGSVKETISTLLEKL--------VHPDEDVVVICGSTFLMSDARDALGLSYPSDA 195
            +E +  A A     GE     ETIST+ E +           D++VVV+CGS FLM++AR ALGL  P D+
Sbjct:  467 LEEVNLALANATTEGEKAYQYETISTIKEGVNAALAASRASSDDEVVVVCGSVFLMAEARQALGLKEPIDS 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
W2QFY1_PHYPN8.200e-640.85Mur_ligase_M domain-containing protein n=13 Tax=Ph... [more]
A0A8J5MHS4_9STRA2.910e-540.85Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A2P4YSC5_9STRA5.370e-540.85Folylpolyglutamate synthase n=2 Tax=Phytophthora p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:281968..282534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4792.ETI50830
PFAMsMur_ligase_M
Model size202
Max annot lvl4776|Peronosporales
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K11754
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00841
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.34e-06
EggNOG OGsCOG0285@1|root,KOG2525@2759|Eukaryota,3QA7Q@4776|Peronosporales
EC6.3.2.12,6.3.2.17
DescriptionMur ligase middle domain
Cds size201
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.9292982-CDS-H-akashiwo_Contig1030:281967..2821261681387056.9292982-CDS-H-akashiwo_Contig1030:281967..282126Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 281968..282126 -
1681387056.9407513-CDS-H-akashiwo_Contig1030:282492..2825341681387056.9407513-CDS-H-akashiwo_Contig1030:282492..282534Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 282493..282534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.7.1prot_H-akashiwo_Contig1030.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1030 281968..282534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1030.7.1

>prot_H-akashiwo_Contig1030.7.1 ID=prot_H-akashiwo_Contig1030.7.1|Name=mRNA_H-akashiwo_Contig1030.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
VPVEALRAAAAPVQITGESGSVKETISTLLEKLVHPDEDVVVICGSTFLM
SDARDALGLSYPSDAM*
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mRNA from alignment at H-akashiwo_Contig1030:281968..282534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1030.7.1 ID=mRNA_H-akashiwo_Contig1030.7.1|Name=mRNA_H-akashiwo_Contig1030.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=567bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:281968..282534- (Heterosigma akashiwo CCMP452)
GTGCCGGTGGAGGCTCTCAGGGCCGCGGCCGCCCCCGTCCAGGTCTGTGT
GTGGTGGGGGGTGGTGCCATGGGAGGGGAGGGGGGCCCCGAGCAGCAGGA
GCGCTGGGTAGCCAGGGGCCCCCTTCTTCTCGGCACGCGCCGCGCCTTGG
TTTGATTGAAAAGGGGTGGTAGTGTCGGTACCGACAAAGGGCGTGTGTTT
TAACTCTGCTGCATTTGAGACAGTCTGTGGCCGGCGTCTTCTTTTGTTTG
CTTCTTTATTAGACTTTTTTTTTTTTTTTTTATGGGTATACAGACTAAGA
GAAAAGGTGTGCGTGTGTGGAGGGGAGCGGCGTATTTATATCCTAATCTC
TCAACTGCTCTGCTCGGCTCTCTCACTTGCATGCTACACTGCCCCCCTCC
TACAACAGATTACAGGGGAGAGTGGTAGTGTGAAAGAGACAATATCTACT
CTGCTGGAAAAGCTTGTGCATCCGGACGAAGATGTTGTGGTGATATGTGG
ATCTACGTTTTTAATGTCAGATGCAAGAGATGCTTTAGGTCTATCATATC
CAAGCGACGCCATGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1030:281968..282534-

>mRNA_H-akashiwo_Contig1030.7.1 ID=mRNA_H-akashiwo_Contig1030.7.1|Name=mRNA_H-akashiwo_Contig1030.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:281968..282534- (Heterosigma akashiwo CCMP452)
GTGCCGGTGGAGGCTCTCAGGGCCGCGGCCGCCCCCGTCCAGATTACAGG
GGAGAGTGGTAGTGTGAAAGAGACAATATCTACTCTGCTGGAAAAGCTTG
TGCATCCGGACGAAGATGTTGTGGTGATATGTGGATCTACGTTTTTAATG
TCAGATGCAAGAGATGCTTTAGGTCTATCATATCCAAGCGACGCCATGTA
A
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