mRNA_H-akashiwo_Contig1030.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1030.4.1
Unique NamemRNA_H-akashiwo_Contig1030.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: A0A7S4D804_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D804_HETAK)

HSP 1 Score: 116 bits (290), Expect = 1.540e-32
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 RGTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSES 180
            RGTALLLDETALEEGQLNALGVRSLQAL+NLMNVQKLPYDFQFYQMEHEVDHPVMIFSES
Sbjct:   26 RGTALLLDETALEEGQLNALGVRSLQALKNLMNVQKLPYDFQFYQMEHEVDHPVMIFSES 85
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: D8LEY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.270e-12
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 GTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFS 174
            GT ++LDET+LE GQ+   GV +L AL +LM++QK+PYDF FY+M+ EVDHP +  S
Sbjct:   10 GTVVVLDETSLEPGQVGTEGVTNLAALNSLMSLQKVPYDFGFYKMDFEVDHPTISLS 66
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: UPI001D05DE6C (mini-chromosome maintenance complex-binding protein n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D05DE6C)

HSP 1 Score: 67.4 bits (163), Expect = 1.210e-11
Identity = 30/57 (52.63%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    7 TALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSE 177
            T L++DE+ L+ G+L+ +GV+++QAL N++  Q+LPYDF+FYQM+++ D PV+IFSE
Sbjct:  398 THLIIDESRLQAGRLDQIGVKNVQALANVVRNQRLPYDFKFYQMDYDTDIPVLIFSE 454
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: A0A6H5KW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW72_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.210e-11
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 GTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFS 174
            GT ++LDET+LE GQ+   GV +L AL +LM++QK+PYDF FY+M+ EVDHP +  S
Sbjct:  501 GTVVVLDETSLEPGQVGTEGVTNLAALNSLMSLQKVPYDFGFYKMDFEVDHPTISLS 557
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: UPI000E6DA266 (mini-chromosome maintenance complex-binding protein n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6DA266)

HSP 1 Score: 65.9 bits (159), Expect = 4.220e-11
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 RGTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSE 177
            +GT L+LDET +E+G+L+  GV ++ AL NL+N QK+ YDF+FY+ME + D PV++ SE
Sbjct:  415 KGTHLVLDETKMEQGRLDNTGVHNIAALGNLINTQKVEYDFKFYKMEFDSDIPVLVLSE 473
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: A0A0D2ZT16_BRAOL (Uncharacterized protein n=2 Tax=Brassica oleracea TaxID=3712 RepID=A0A0D2ZT16_BRAOL)

HSP 1 Score: 62.8 bits (151), Expect = 5.200e-11
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 GTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSE 177
            GT L+LDET L+ G+LN++GV + + L+NL+  QK+ YDFQ+Y+ME   D  ++IFSE
Sbjct:    4 GTHLILDETELQPGRLNSVGVENAKLLKNLLECQKVAYDFQYYKMEMATDAQMLIFSE 61
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: A7RN02_NEMVE (Mini-chromosome maintenance complex-binding protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RN02_NEMVE)

HSP 1 Score: 65.5 bits (158), Expect = 5.770e-11
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 GTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSE 177
            GT L+LDETA+E GQLNA GV+++ +L NLM+ QKL YDF FY+ E  VD  V++ SE
Sbjct:  448 GTELVLDETAMEAGQLNATGVQNVTSLGNLMSWQKLAYDFNFYKTEFMVDIKVLVMSE 505
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: A0A087HJM7_ARAAL (Uncharacterized protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087HJM7_ARAAL)

HSP 1 Score: 63.2 bits (152), Expect = 3.760e-10
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 GTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSE 177
            GT L+LDET L+ G LN++GV + Q L+NL+  QK+ YDFQ+Y+ME   D  ++IFSE
Sbjct:  416 GTHLILDETELQRGTLNSVGVENAQLLKNLVECQKVEYDFQYYKMEMATDVQMLIFSE 473
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: UPI00200C7C01 (mini-chromosome maintenance complex-binding protein n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200C7C01)

HSP 1 Score: 63.2 bits (152), Expect = 3.760e-10
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    7 TALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSE 177
            T L+LDET +E+G+L+A GV ++ AL NL+N QK+ YDF++YQM+ E D  V+I SE
Sbjct:  414 THLVLDETRMEQGRLDAAGVHNISALGNLINTQKVKYDFKYYQMDFESDVAVLILSE 470
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BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Match: A0A0M4E937_DROBS (Mini-chromosome maintenance complex-binding protein n=1 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M4E937_DROBS)

HSP 1 Score: 62.8 bits (151), Expect = 5.140e-10
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    7 TALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEVDHPVMIFSE 177
            T L+LDET L++G+L A GV+++Q L NL+N Q+L  DFQ+Y +++ VD PV+IFSE
Sbjct:  401 THLILDETCLQQGKLEASGVQAVQHLANLINHQQLKCDFQYYHIDYNVDIPVLIFSE 457
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D804_HETAK1.540e-3298.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LEY9_ECTSI4.270e-1256.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001D05DE6C1.210e-1152.63mini-chromosome maintenance complex-binding protei... [more]
A0A6H5KW72_9PHAE1.210e-1156.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000E6DA2664.220e-1152.54mini-chromosome maintenance complex-binding protei... [more]
A0A0D2ZT16_BRAOL5.200e-1151.72Uncharacterized protein n=2 Tax=Brassica oleracea ... [more]
A7RN02_NEMVE5.770e-1158.62Mini-chromosome maintenance complex-binding protei... [more]
A0A087HJM7_ARAAL3.760e-1053.45Uncharacterized protein n=2 Tax=Arabis TaxID=50451... [more]
UPI00200C7C013.760e-1054.39mini-chromosome maintenance complex-binding protei... [more]
A0A0M4E937_DROBS5.140e-1054.39Mini-chromosome maintenance complex-binding protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:238435..239145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEY9
Preferred nameMCMBP
PFAMsMCM_bind
Model size182
Max annot lvl2759|Eukaryota
KEGG koko:K03549,ko:K06997
KEGG TC2.A.72
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0098813,GO:1901360,GO:1901576,GO:1902969,GO:1903047
Exons2
Evalue7e-13
EggNOG OGsKOG2545@1|root,KOG2545@2759|Eukaryota
Descriptionsister chromatid cohesion
Cds size180
COG categoryQ
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387057.0017574-CDS-H-akashiwo_Contig1030:238434..2385661681387057.0017574-CDS-H-akashiwo_Contig1030:238434..238566Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 238435..238566 -
1681387057.0135517-CDS-H-akashiwo_Contig1030:239097..2391451681387057.0135517-CDS-H-akashiwo_Contig1030:239097..239145Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 239098..239145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.4.1prot_H-akashiwo_Contig1030.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1030 238435..239145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1030.4.1

>prot_H-akashiwo_Contig1030.4.1 ID=prot_H-akashiwo_Contig1030.4.1|Name=mRNA_H-akashiwo_Contig1030.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
RGTALLLDETALEEGQLNALGVRSLQALQNLMNVQKLPYDFQFYQMEHEV
DHPVMIFSES
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mRNA from alignment at H-akashiwo_Contig1030:238435..239145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1030.4.1 ID=mRNA_H-akashiwo_Contig1030.4.1|Name=mRNA_H-akashiwo_Contig1030.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=711bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:238435..239145- (Heterosigma akashiwo CCMP452)
CGGGGCACCGCGCTGCTGCTCGACGAGACCGCCCTGGAGGAGGGGCAGGT
GCCGCCCTCACCCCCCACCCCCCGCGCCCGCCCCCGCCCTCGCCCACCGC
GCCCACCTTCCGCGCCCATGGGAACGGAGGAGCAAGGCTGCCGCAAGGCT
GGCTGATCAAACGGACGAACAGATGAAACAGCACGCACAGTGTAAGGCGG
TGGCTATGGTGGGTGATTCGATGTCAGATTGACCTGCTCCTCACAGCAGT
TATATATTCTCTCGAGGCAACAGACAATTCTTCATCTTGTAATGTATAGA
TCAAGTTTTGCTTAGGATACCTCAGTTGAACTGTTGAAAACTAGATATTA
TAGGTTTGCCTAGATGATGGTCCTATTCTGACCAATCAAAGTACTAATTG
ACATGCGTTCACAATATATATTTTTTCATACAGGATACGATTTGCTTGTA
CAAACAAATGACCCATTCTGCCTTTCCCTTCCAGCCATAATAATCATTAT
GGTTTCTTCTGTAGTTCGTTGGTATCCTCTTTTCATGTTGTATAATTCAA
AAATGAATGCTGTGATCGCATGTTCTCAGCTGAATGCACTTGGCGTGAGG
AGTTTACAGGCTTTGCAAAACCTCATGAACGTGCAGAAGCTGCCCTATGA
TTTTCAGTTTTACCAGATGGAACACGAGGTTGACCATCCTGTCATGATCT
TTTCAGAGAGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1030:238435..239145-

>mRNA_H-akashiwo_Contig1030.4.1 ID=mRNA_H-akashiwo_Contig1030.4.1|Name=mRNA_H-akashiwo_Contig1030.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:238435..239145- (Heterosigma akashiwo CCMP452)
CGGGGCACCGCGCTGCTGCTCGACGAGACCGCCCTGGAGGAGGGGCAGCT
GAATGCACTTGGCGTGAGGAGTTTACAGGCTTTGCAAAACCTCATGAACG
TGCAGAAGCTGCCCTATGATTTTCAGTTTTACCAGATGGAACACGAGGTT
GACCATCCTGTCATGATCTTTTCAGAGAGT
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