mRNA_H-akashiwo_Contig1030.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1030.3.1
Unique NamemRNA_H-akashiwo_Contig1030.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1030.3.1 vs. uniprot
Match: A0A7S3V740_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V740_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 RVALGLSADKDLPRALEVVFRHVRDPARVHFLQAAHPRATPVLGLVNA 144
            R+ +G SADKDL      +  HV+DP R+H ++AAHPRA  +  ++ A
Sbjct:  523 RIVVGFSADKDLQDCGSTLLSHVKDPHRIHLVEAAHPRAAKLEDMLEA 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3V740_9STRA1.530e-543.75Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:227116..227577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps9534
PFAMsMur_ligase_M
Model size158
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K11754
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00841
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue8.75e-06
EggNOG OGsCOG0285@1|root,KOG2525@2759|Eukaryota,2XAPS@2836|Bacillariophyta
EC6.3.2.12,6.3.2.17
Descriptiontetrahydrofolylpolyglutamate synthase activity
Cds size156
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.7793708-CDS-H-akashiwo_Contig1030:227115..2272141681387056.7793708-CDS-H-akashiwo_Contig1030:227115..227214Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 227116..227214 +
1681387056.7892175-CDS-H-akashiwo_Contig1030:227518..2275751681387056.7892175-CDS-H-akashiwo_Contig1030:227518..227575Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 227519..227575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.3.1prot_H-akashiwo_Contig1030.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1030 227116..227575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1030.3.1

>prot_H-akashiwo_Contig1030.3.1 ID=prot_H-akashiwo_Contig1030.3.1|Name=mRNA_H-akashiwo_Contig1030.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
RVALGLSADKDLPRALEVVFRHVRDPARVHFLQAAHPRATPVLGLVNAAA
EL
back to top

mRNA from alignment at H-akashiwo_Contig1030:227116..227577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1030.3.1 ID=mRNA_H-akashiwo_Contig1030.3.1|Name=mRNA_H-akashiwo_Contig1030.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=462bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:227116..227577+ (Heterosigma akashiwo CCMP452)
CGGGTGGCGCTGGGGCTGAGCGCGGACAAGGACCTGCCGCGGGCCCTGGA
GGTGGTCTTCCGCCACGTCCGCGACCCCGCCCGCGTCCACTTCCTCCAGG
TACACACCCTGCCCGCACCCTGCGCCCTGCACCCTGGACCAGCGCATGCA
GACGCACCTCCCCGCATGGATTCTGCTCGCTGACGAACCCCCTCCCCTTT
TAGAGATGCATCTATTCTATATTTGAAGTGGGGAGTGGGTGTCACAGCCC
CTGGCCCCCCCTTCCCCCCAGGAGGGTCTCAGCACGCCTGCGGTCCGCTG
TGTGGCCGACGGCCGAGCCCTTTGCCGGCGCGGCGGCGGCGGCGGCGCCG
CCTCCCCTTCCTTCCCTCTTCTCTCCATGGGGTGGGGGGTGGGGTCGGGT
CAGGCGGCGCACCCGCGGGCGACGCCGGTGCTGGGTCTGGTGAACGCGGC
CGCGGAACTGGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1030:227116..227577+

>mRNA_H-akashiwo_Contig1030.3.1 ID=mRNA_H-akashiwo_Contig1030.3.1|Name=mRNA_H-akashiwo_Contig1030.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:227116..227577+ (Heterosigma akashiwo CCMP452)
CGGGTGGCGCTGGGGCTGAGCGCGGACAAGGACCTGCCGCGGGCCCTGGA
GGTGGTCTTCCGCCACGTCCGCGACCCCGCCCGCGTCCACTTCCTCCAGG
CGGCGCACCCGCGGGCGACGCCGGTGCTGGGTCTGGTGAACGCGGCCGCG
GAACTG
back to top