mRNA_H-akashiwo_Contig1030.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1030.2.1
Unique NamemRNA_H-akashiwo_Contig1030.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 213 bits (543), Expect = 1.890e-62
Identity = 108/138 (78.26%), Postives = 119/138 (86.23%), Query Frame = 1
Query:    1 IPEEQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGLQL-YADDLTL 411
            IP  QFGF+PDTGTLD G +LADQI++AL+A+KDVRLVALDF+GAFDKVWW GLLAHLWAVGVR+KAY+LFESYLSDRALFV +NG+ISE V IKSGVPQGAIWSPLLFDLFVRNVP        E L L YADDLTL
Sbjct:  416 IPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYLSDRALFVVANGQISERVSIKSGVPQGAIWSPLLFDLFVRNVPQR----VREALCLFYADDLTL 549          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A7S3Y8J9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J9_HETAK)

HSP 1 Score: 155 bits (392), Expect = 1.340e-44
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 1
Query:   91 AKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGLQL-YADDLTL 411
            A+KDVRLV LDFKGA DKVWW GLLAHLWAVGVR+KA+KL +SYLSDRALFV +NG+ S  + IKSGVPQGAIWSPLLFDLF+RNVP        E L L YADDLTL
Sbjct:    1 ARKDVRLVELDFKGACDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFIRNVPQR----VREALCLFYADDLTL 104          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A7S3Y8U8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U8_HETAK)

HSP 1 Score: 149 bits (375), Expect = 8.700e-41
Identity = 76/101 (75.25%), Postives = 83/101 (82.18%), Query Frame = 1
Query:  112 VALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGLQL-YADDLTL 411
            VALDFKGAFDKVWW GLLAHLWAVGVR+KA+KL +SYLSDRALFV +NG+ S  + IKSGVPQGAIWSPLLFDLF+RNVP        E L L YADDLTL
Sbjct:    1 VALDFKGAFDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKSGVPQGAIWSPLLFDLFIRNVPQR----VREALCLFYADDLTL 97          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 133 bits (335), Expect = 9.410e-34
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 IPEEQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYL 225
            IP  QFGF+PDTGTLD G +LADQI++AL+A+KDVRLVALDF+GAFDKVWW GLLAHLWAVGVR+KAY+LFESYL
Sbjct:  416 IPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYL 490          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A2P2IA02_9CRUS (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IA02_9CRUS)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-19
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   13 QFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGLQLYADDLT 408
            Q GF     T+D    L ++I ++L  K+   +V LD KGAFDKVW  GLL  L  +G++   ++  + YL+DR   V   G +SE +   +GVPQGA+ SPLLF++ + ++P      +   +  YADDLT
Sbjct:  188 QCGFRKGLSTIDILLRLENKIRKSLDMKESCIVVYLDLKGAFDKVWHDGLLYKLAKMGIKGNLFRWIKDYLTDRKFMVRVGGTLSEPLDASNGVPQGAVLSPLLFNIMLSDMPI----DNKIDIYCYADDLT 315          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A8J9YV55_BRALA (SLC22A5 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YV55_BRALA)

HSP 1 Score: 93.2 bits (230), Expect = 2.120e-19
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    1 IPEEQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEG-LQLYADDLTL 411
            I + QFGF P   T D   +L+   + AL    +VR +ALD KGAFDKVW  GL + L + G+  K      SYL +R++ V  +G+ S    I + VP G+I  PLLF +++ ++     G   E  L LYADD TL
Sbjct:  641 ISDRQFGFRPHQSTADILTILSQHWSNALDRGYEVRHIALDIKGAFDKVWHNGLCSKLKSKGISGKLLTWISSYLLNRSMKVVLSGQSSTTTPINASVPLGSILGPLLFSVYIDDL-----GDECENPLYLYADDSTL 773          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A2P2I2N0_9CRUS (Pol-like protein n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I2N0_9CRUS)

HSP 1 Score: 92.4 bits (228), Expect = 4.010e-19
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 IPEEQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGL--QLYADDLTL 411
            +   Q GF    GT+D    L  +I ++++ +K   +V +D K A+DKVW  GL+  L   G++ K  +    YL +R + V   G ISE+ GI++GVPQGA+ SP+LF++ + ++P        EG+   +YADD+T+
Sbjct:  478 LARSQCGFRKGQGTIDVLVRLEQEIRESMRDRKVCLVVYMDLKSAYDKVWGRGLVYKLIKSGLKGKIVQWLNDYLRNRKIKVKIEGMISENRGIETGVPQGAVLSPILFNVMINDIP------QQEGIVQYIYADDITI 610          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A2P2I6P4_9CRUS (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I6P4_9CRUS)

HSP 1 Score: 91.3 bits (225), Expect = 9.800e-19
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 IPEEQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGLQLYADDLT 408
            + + Q GF     T+DA   L ++I +++ + +   +V LD KGAFDKVW  GL+  L  +G+    ++    YL DR  +V   GE+S+   + SGVPQGAI SP+LF++ + ++P      +      YADDLT
Sbjct:   74 LAKSQCGFRKRLSTIDALLRLENKIRKSMDSGEHCLVVYLDLKGAFDKVWHEGLMYKLGKLGLEGNLFRWVHHYLKDRKFYVRIGGELSDGFPVMSGVPQGAILSPILFNIMLSDMPSMHEVDA----YCYADDLT 205          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: T2M4I6_HYDVU (Patched domain-containing protein 2 (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M4I6_HYDVU)

HSP 1 Score: 89.7 bits (221), Expect = 3.500e-18
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    1 IPEEQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGLQLYADDLTL 411
            + + Q+GF     T D    + ++  +AL    + R +ALD   AFDKVW  GLL  L + GV  K ++  +S+LS+R + V   G+ S    + SGVPQG+I  P+LF +++ ++P   +   A    L+ADD TL
Sbjct:  851 LSDNQYGFRSSRSTADLLTAVTERFYRALDGGSEARAIALDISKAFDKVWHAGLLHKLASYGVSGKVFESIKSFLSNRFIKVILEGQHSSLFPVTSGVPQGSILGPVLFLIYINDLPDNLSSKVA----LFADDSTL 983          
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Match: A0A1X7SYG8_AMPQE (Reverse transcriptase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SYG8_AMPQE)

HSP 1 Score: 88.6 bits (218), Expect = 8.200e-18
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   10 EQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVWWCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQGAIWSPLLFDLFVRNVPPTGAGSSAEGLQLYADD 402
            +QFGF+    TL    +  + I  +L       ++ LD + AFD V    LL HLW  G+R  A+K F +YL  R+ +V  N   S  + + SGVPQG+I  PLLF L++ ++P T   SS   L LYADD
Sbjct:  159 KQFGFLSTRSTLQQLLLHLNSILTSLSDGSQCDVIYLDIRKAFDSVSHSKLLTHLWDAGIRGFAWKFFRAYLYGRSQYVYINSCSSNHLPVISGVPQGSILGPLLFILYINDLPVTVLHSS---LLLYADD 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1030.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8N4_HETAK1.890e-6278.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8J9_HETAK1.340e-4474.07Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y8U8_HETAK8.700e-4175.25Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8Z6_HETAK9.410e-3481.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2P2IA02_9CRUS1.860e-1938.64RNA-directed DNA polymerase from mobile element jo... [more]
A0A8J9YV55_BRALA2.120e-1939.86SLC22A5 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
A0A2P2I2N0_9CRUS4.010e-1935.97Pol-like protein n=2 Tax=Hirondellea gigas TaxID=1... [more]
A0A2P2I6P4_9CRUS9.800e-1936.76RNA-directed DNA polymerase from mobile element jo... [more]
T2M4I6_HYDVU3.500e-1835.77Patched domain-containing protein 2 (Fragment) n=1... [more]
A0A1X7SYG8_AMPQE8.200e-1839.69Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1030contigH-akashiwo_Contig1030:127124..127534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15703323
PFAMs2OG-FeII_Oxy_2,Exo_endo_phos_2,RVT_1
Model size411
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3AK7D@33154|Opisthokonta,3BPZQ@33208|Metazoa
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size411
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.9708085-CDS-H-akashiwo_Contig1030:127123..1275341681387056.9708085-CDS-H-akashiwo_Contig1030:127123..127534Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1030 127124..127534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1030.2.1prot_H-akashiwo_Contig1030.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1030 127124..127534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1030.2.1

>prot_H-akashiwo_Contig1030.2.1 ID=prot_H-akashiwo_Contig1030.2.1|Name=mRNA_H-akashiwo_Contig1030.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp
IPEEQFGFIPDTGTLDAGAVLADQIAQALQAKKDVRLVALDFKGAFDKVW
WCGLLAHLWAVGVRAKAYKLFESYLSDRALFVASNGEISEDVGIKSGVPQ
GAIWSPLLFDLFVRNVPPTGAGSSAEGLQLYADDLTL
back to top

mRNA from alignment at H-akashiwo_Contig1030:127124..127534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1030.2.1 ID=mRNA_H-akashiwo_Contig1030.2.1|Name=mRNA_H-akashiwo_Contig1030.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:127124..127534+ (Heterosigma akashiwo CCMP452)
ATCCCAGAAGAACAGTTTGGGTTCATTCCTGACACAGGCACTTTAGATGC GGGTGCCGTACTTGCAGACCAGATAGCTCAAGCACTGCAGGCTAAAAAAG ATGTGCGGCTAGTTGCCCTTGATTTCAAGGGGGCTTTCGACAAGGTGTGG TGGTGTGGGCTTCTCGCACATCTTTGGGCTGTAGGGGTGCGCGCCAAGGC CTACAAGCTCTTTGAGAGCTATCTCTCCGATAGGGCGCTCTTTGTTGCCT CTAATGGTGAGATCTCAGAGGATGTGGGCATCAAGTCCGGCGTACCGCAG GGCGCCATCTGGTCTCCTCTTCTTTTTGACCTCTTTGTGAGGAACGTTCC CCCAACGGGTGCGGGCAGCTCTGCGGAAGGCCTGCAACTTTACGCTGATG ATCTTACTCTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1030:127124..127534+

>mRNA_H-akashiwo_Contig1030.2.1 ID=mRNA_H-akashiwo_Contig1030.2.1|Name=mRNA_H-akashiwo_Contig1030.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig1030:127124..127534+ (Heterosigma akashiwo CCMP452)
ATCCCAGAAGAACAGTTTGGGTTCATTCCTGACACAGGCACTTTAGATGC
GGGTGCCGTACTTGCAGACCAGATAGCTCAAGCACTGCAGGCTAAAAAAG
ATGTGCGGCTAGTTGCCCTTGATTTCAAGGGGGCTTTCGACAAGGTGTGG
TGGTGTGGGCTTCTCGCACATCTTTGGGCTGTAGGGGTGCGCGCCAAGGC
CTACAAGCTCTTTGAGAGCTATCTCTCCGATAGGGCGCTCTTTGTTGCCT
CTAATGGTGAGATCTCAGAGGATGTGGGCATCAAGTCCGGCGTACCGCAG
GGCGCCATCTGGTCTCCTCTTCTTTTTGACCTCTTTGTGAGGAACGTTCC
CCCAACGGGTGCGGGCAGCTCTGCGGAAGGCCTGCAACTTTACGCTGATG
ATCTTACTCTT
back to top