mRNA_H-akashiwo_Contig1029.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1029.3.1
Unique NamemRNA_H-akashiwo_Contig1029.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 411 bits (1056), Expect = 5.590e-141
Identity = 201/281 (71.53%), Postives = 233/281 (82.92%), Query Frame = 1
Query:  109 LHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLLVDLSCPQVEPTPVIEDN 951
            LH+ L    F RS +ESCLY   H   G + M+AVYVDDLV+S +  +VVS  K S AS++S+TD G L  ILGIKV RD+RNKCF+LSQ SFI+DA++KFGLD+LPAC+TP+    DLTPTPGFK+ L D+N YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYLKGTQSE LRLGGDLVLRA++D+DFC DR+DGKSVTGY++ LGD+PIVW+SKLQ A TTSTVEAEYLALRS +KDIMWLR LL ++ CPQ EPTPV+EDN
Sbjct:    3 LHDHLESLGFKRSGHESCLYI--HRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDN 281          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 314 bits (805), Expect = 3.750e-102
Identity = 151/169 (89.35%), Postives = 164/169 (97.04%), Query Frame = 1
Query:    1 VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKSSLPDSN 507
            VKQPPGFVDKDHP+KVWKLKKALYGLRQSP+LWYNTLHEFLL+QNFVRSDYESCLYTRK+SVTGED+M+AVYVDDLVLSSNIPSVVS+LK+SF SRFSITDLGPL SILGIKV+RD  NKCFYLSQASF+RDAISKFGLD+LPACRTPMT ATDLTPTPGFK+SLPD+N
Sbjct:  241 VKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 305 bits (781), Expect = 1.630e-100
Identity = 147/218 (67.43%), Postives = 174/218 (79.82%), Query Frame = 1
Query:    1 VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYL 654
            V+QPP +VD  HPNKVWKL KALYGL+QSP++WY  LH+ L    F RS +ESCLY   H   G + M+AVYVDDLV+S +  ++VS  K S AS++++TD G L  ILGIKV RD+RNKCF+LSQ SFI+DA++KFGLD+LPAC+TP+    DLTPTPGFK+ L D+N YRSMVGTLAWVANWTRPELAFTVHKLQR Q NPEPKHFEA QRAFRYL
Sbjct:   53 VRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYI--HRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 253 bits (647), Expect = 1.870e-73
Identity = 134/319 (42.01%), Postives = 203/319 (63.64%), Query Frame = 1
Query:    1 VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKSSLP--DSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLLVDLSCPQVEPTPVIEDN 951
            +KQP G+      +KV KLKK+LYGL+Q+PK WY  L+ FLL+Q + R+ Y+SC+Y+ K S TG  ++I+VYVDD+VL+S+  S +S +K + +  ++++D+G ++SILGIKV RDR  +   LSQ SFI +A  KF +        P+    D+         L   ++ ++RS+VGT+ W+A WT PE+A+++H L +  ++P      A+    RYL  T+ + + LGG L L AY DADFC +R  G+S +G+ I LG SPI+W+S++Q   T +T EAEY++LR+ + D+MWL+ LL  L   Q    P+ EDN
Sbjct:  611 MKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYS-KVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDN 927          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: UPI000BBE8B6F (uncharacterized protein LOC111201737 n=2 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE8B6F)

HSP 1 Score: 219 bits (559), Expect = 1.800e-65
Identity = 125/314 (39.81%), Postives = 182/314 (57.96%), Query Frame = 1
Query:    7 QPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGG--DLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLLVDLSCPQVEPTPVI 942
            QPPGFVDKD+PN V KL+KA+YGL+Q+P+ WYN L  FLL+  F+ S  ++ L+   ++  G    + VYVDD++++ + P  +     S + RFSI DLGPL   LGI+V R       +LSQ  +I D + +  +    +  TPM   T L+ T G  S + D  RYR  VG+L +++  TRP++AF V+KL +Y   P  +H+ A +R  RYL GT+S  +      +  L A+TDAD+  +R D  S   YV+ LG  P+ W+SK QT    S+ EAEY ++ S   ++ W+  LL +L    V  TP I
Sbjct:    3 QPPGFVDKDNPNAVCKLRKAIYGLKQAPRAWYNELRTFLLQSGFINSLADASLFV--YNTNGVYLYMLVYVDDIIITGSSPQHIDQFINSLSQRFSIKDLGPLSYFLGIEVQRSSNG--LHLSQHRYITDLLQRMQMSTTNSVSTPMCPNTTLSLTSG--SVMDDPTRYRMAVGSLQYLS-LTRPDIAFAVNKLSQYMHQPTTEHWTAVKRVLRYLSGTRSHGITFSSRHNPTLHAFTDADWAGNRDDYTSTGAYVVYLGSHPVAWSSKKQTGVARSSTEAEYRSVASTAAELCWITSLLHELGI--VSQTPAI 307          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK)

HSP 1 Score: 220 bits (561), Expect = 2.990e-65
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 1
Query:    1 VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRN 357
            VKQPPGFVDKDHP+KVWKLKKALYGLRQSP+LWYNTLHEFLL+QNFVRSDYESCLYTRK+SVTGED+M+AVYVDDLVLSSNIPSVVS+LK+SF SRFSITDLGPL SILGIKV+RD  N
Sbjct:  312 VKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTN 430          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A507DKM5_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DKM5_9FUNG)

HSP 1 Score: 212 bits (539), Expect = 1.200e-62
Identity = 119/306 (38.89%), Postives = 179/306 (58.50%), Query Frame = 1
Query:   64 ALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTP--TPGFKSSL-PDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLV-LRAYTDADFCQDRIDGKSVTGYVIMLGDS-PIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLLVDLSCPQ-----VEPTPVIEDN 951
            ALYGL+Q+P+ WY+ LH+ L    F R   ++ +Y R    +     I+VYVDDL++ +   S +S++KTS  + F++TDLG ++  LG++V RD      YL Q S++ D + +FG+       TPM   T L P      K+S  P    YR +VG+L ++   TRP++A  V  L R+ SNP P+H +AA+R  RYL+GT    L +GG+ V L  Y+DAD+  + ID +S+TGY+  +G++ P+ WASK Q     S+ EAEY+AL    ++ +WL  LL +L  P+       PT + EDN
Sbjct:    1 ALYGLKQAPRKWYSLLHKELTSLGFKRLANDNAVYIRTLPKSDSSQYISVYVDDLLIFAKTKSEISSIKTSLHNEFNMTDLGEVNHYLGMRVRRDYSRHVIYLDQESYVNDILERFGMQDCKPVNTPM-DRTKLEPYEVENTKTSPNPQEGEYRKIVGSLVYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSDYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFYIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETIWLCSLLQELQIPEYLDENARPTTIYEDN 305          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A0F8A052_9HYPO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F8A052_9HYPO)

HSP 1 Score: 208 bits (529), Expect = 4.460e-60
Identity = 121/318 (38.05%), Postives = 175/318 (55.03%), Query Frame = 1
Query:    1 VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLV-LRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLLVDLSCPQVEPTPVIEDN 951
            ++QP GF  KD  ++V +LKKA+YGL+Q+P++W+ T+ +FL    +     +  ++ R  S+      IA+YVDDL+L+   P  V  +K + + RF +TDLGP    LGIKVTRDR  +   LSQ ++I   +  + +       TPM       P   + +   D   Y   VG+L +    TR ++ F+V    RY +NP P+H  A +R  RYLKGT    L L G L  ++ YTDADF  D    +S +G+   LG + I W SK Q   T S+ EAEY+AL    ++ +WLR L+ DL  PQ  PT + EDN
Sbjct:  133 LEQPQGF--KDGTSRVCRLKKAIYGLKQAPRIWFQTISKFLETLGYRPIAADVSVFVRGKSI------IAIYVDDLLLTGACPREVQRIKDALSRRFQMTDLGPCSHYLGIKVTRDRARRRIELSQRAYIEKVLRTYNMSDCNPADTPMAADPLQPPAEDWHAHPKDQTAYAKRVGSLMYAMLGTRSDICFSVGACCRYLANPTPQHQTAVKRIMRYLKGTIDSVLVLEGPLQPIQGYTDADFAADLHTRRSTSGFFYSLGSAAISWTSKRQPCVTLSSTEAEYVALTQSAQEAIWLRSLMKDLCHPQAGPTVIHEDN 442          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 208 bits (530), Expect = 1.320e-59
Identity = 117/332 (35.24%), Postives = 182/332 (54.82%), Query Frame = 1
Query:    1 VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMI-----AVYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATD--LTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERLRL--------GGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLLVDLSCPQVEPTPVIEDN 951
            + QP GFVD++HP  V KLKK+LYGL+QS + W  TL  FL +  + +S+ ++C+Y +  S+  ++  I     AVYVDD++  SN  ++++  K      F +TD G +  ILG+ + RDR  K  ++SQ  ++   + +FG+       TP+ T          GF     D N Y+  +G L +++  TRP+++  V  L  Y SNP  +H+   +R  RY+KGT +  L+          GD  L  Y+DA++  D    +S +GYV  + +S + W SK Q + T ST EAEY+AL    ++ +W+R LL D+ C   EPT + EDN
Sbjct:  141 MSQPDGFVDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVK--SIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLETTYHKRTEEEEGF-----DKNLYQQAIGRLTYISTATRPDISAAVSILSSYMSNPSKEHWNGVKRLLRYIKGTLNFGLKFTTSENDDENGD-ELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDN 464          
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Match: A0A0L9TAH8_PHAAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TAH8_PHAAN)

HSP 1 Score: 207 bits (526), Expect = 2.710e-59
Identity = 120/320 (37.50%), Postives = 181/320 (56.56%), Query Frame = 1
Query:    1 VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSDYESCLYTRKHSVTGEDSMIA-VYVDDLVLSSNIPSVVSNLKTSFASRFSITDLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMTTATDLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQSNPEPKHFEAAQRAFRYLKGTQSERL--RLGGDLVLRAYTDADFCQDRIDGKSVTGYVIMLGDSPIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLLVDLSCPQVEPTPVIEDN 951
            ++QP G+  K   +KV KLKKALYGL+Q+P+ W   + ++    NF++  YE  LY +     G+D +I  +YVDDL+ + N PS+    K      F +TD+G +   LGI+V +   NK  +++Q S+ +D + KF +D      TPM     L+     +    D   Y+S+VG+L ++   TRP++ + V  + RY   P   HF++A+R  RY++GT S  L   +  D  L  Y+D+D+  D  D KS +G+V  +GD+   W SK Q   T ST EAEY+A  S +   +WLR+LL +LS PQVEPT +  DN
Sbjct:  155 IEQPQGYEVKGEEDKVLKLKKALYGLKQAPRAWNVQIDKYFKAANFIKCPYEHALYIKAQ---GKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTMEFEMTDMGLMAYYLGIEVKQG--NKGIFITQESYAKDVLKKFKMDDANLVGTPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHFKSAKRILRYIQGTTSYGLYYSISNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAVWLRNLLKELSLPQVEPTKIFVDN 466          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1029.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK5.590e-14171.53Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK3.750e-10289.35Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y6S2_HETAK1.630e-10067.43Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK1.870e-7342.01Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI000BBE8B6F1.800e-6539.81uncharacterized protein LOC111201737 n=2 Tax=Brass... [more]
A0A7S3Y3C5_HETAK2.990e-6589.08Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A507DKM5_9FUNG1.200e-6238.89DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A0F8A052_9HYPO4.460e-6038.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9JFU5_PARCT1.320e-5935.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0L9TAH8_PHAAN2.710e-5937.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1029contigH-akashiwo_Contig1029:290387..291337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog67593.Physo108689
Model size951
Max annot lvl67593.Physo108689|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.37e-59
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QIRP@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size951
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387056.1162186-CDS-H-akashiwo_Contig1029:290386..2913371681387056.1162186-CDS-H-akashiwo_Contig1029:290386..291337Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1029 290387..291337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1029.3.1prot_H-akashiwo_Contig1029.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1029 290387..291337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1029.3.1

>prot_H-akashiwo_Contig1029.3.1 ID=prot_H-akashiwo_Contig1029.3.1|Name=mRNA_H-akashiwo_Contig1029.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=317bp
VKQPPGFVDKDHPNKVWKLKKALYGLRQSPKLWYNTLHEFLLEQNFVRSD
YESCLYTRKHSVTGEDSMIAVYVDDLVLSSNIPSVVSNLKTSFASRFSIT
DLGPLDSILGIKVTRDRRNKCFYLSQASFIRDAISKFGLDFLPACRTPMT
TATDLTPTPGFKSSLPDSNRYRSMVGTLAWVANWTRPELAFTVHKLQRYQ
SNPEPKHFEAAQRAFRYLKGTQSERLRLGGDLVLRAYTDADFCQDRIDGK
SVTGYVIMLGDSPIVWASKLQTAATTSTVEAEYLALRSGLKDIMWLRHLL
VDLSCPQVEPTPVIEDN
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mRNA from alignment at H-akashiwo_Contig1029:290387..291337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1029.3.1 ID=mRNA_H-akashiwo_Contig1029.3.1|Name=mRNA_H-akashiwo_Contig1029.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=951bp|location=Sequence derived from alignment at H-akashiwo_Contig1029:290387..291337- (Heterosigma akashiwo CCMP452)
GTAAAACAGCCGCCTGGATTTGTGGACAAGGATCATCCCAACAAAGTCTG GAAGCTCAAAAAGGCTCTCTACGGCCTACGCCAGTCCCCAAAATTATGGT ATAATACGTTGCATGAGTTCCTTCTTGAGCAAAACTTCGTCCGCAGTGAC TACGAATCCTGCCTCTACACTCGCAAACACTCTGTGACTGGGGAGGACTC TATGATTGCAGTGTATGTAGATGATCTGGTACTCAGCAGCAACATCCCTT CTGTAGTTAGTAATCTCAAAACCTCTTTTGCTTCACGATTCAGCATCACC GATCTTGGTCCTCTAGATTCCATTCTCGGGATCAAAGTGACTCGGGACCG TCGTAATAAATGCTTCTACCTCAGTCAGGCTTCTTTCATCAGGGACGCCA TCTCTAAGTTCGGTTTGGACTTCCTGCCAGCTTGTCGCACCCCTATGACC ACTGCTACCGATTTGACTCCCACGCCTGGCTTCAAGTCCTCCTTGCCTGA TTCCAACAGGTATAGGTCGATGGTTGGCACGCTTGCTTGGGTTGCCAACT GGACCCGGCCTGAGCTTGCTTTTACTGTGCACAAGCTTCAAAGATATCAA AGTAACCCTGAGCCCAAGCATTTTGAGGCTGCCCAGAGAGCATTCAGGTA TCTCAAAGGCACTCAGTCTGAGAGGCTGAGGCTTGGGGGGGACCTGGTTC TGCGTGCATATACTGATGCTGACTTCTGCCAGGACAGGATTGATGGCAAA TCTGTCACTGGCTATGTCATTATGCTTGGGGACTCACCTATTGTGTGGGC CTCAAAGCTTCAGACTGCAGCCACTACATCCACTGTGGAAGCTGAGTATT TGGCACTGAGATCTGGACTCAAAGATATAATGTGGCTGAGGCATCTTCTT GTAGACCTCTCATGCCCTCAGGTTGAGCCTACACCAGTCATTGAAGATAA C
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1029:290387..291337-

>mRNA_H-akashiwo_Contig1029.3.1 ID=mRNA_H-akashiwo_Contig1029.3.1|Name=mRNA_H-akashiwo_Contig1029.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=951bp|location=Sequence derived from alignment at H-akashiwo_Contig1029:290387..291337- (Heterosigma akashiwo CCMP452)
GTAAAACAGCCGCCTGGATTTGTGGACAAGGATCATCCCAACAAAGTCTG
GAAGCTCAAAAAGGCTCTCTACGGCCTACGCCAGTCCCCAAAATTATGGT
ATAATACGTTGCATGAGTTCCTTCTTGAGCAAAACTTCGTCCGCAGTGAC
TACGAATCCTGCCTCTACACTCGCAAACACTCTGTGACTGGGGAGGACTC
TATGATTGCAGTGTATGTAGATGATCTGGTACTCAGCAGCAACATCCCTT
CTGTAGTTAGTAATCTCAAAACCTCTTTTGCTTCACGATTCAGCATCACC
GATCTTGGTCCTCTAGATTCCATTCTCGGGATCAAAGTGACTCGGGACCG
TCGTAATAAATGCTTCTACCTCAGTCAGGCTTCTTTCATCAGGGACGCCA
TCTCTAAGTTCGGTTTGGACTTCCTGCCAGCTTGTCGCACCCCTATGACC
ACTGCTACCGATTTGACTCCCACGCCTGGCTTCAAGTCCTCCTTGCCTGA
TTCCAACAGGTATAGGTCGATGGTTGGCACGCTTGCTTGGGTTGCCAACT
GGACCCGGCCTGAGCTTGCTTTTACTGTGCACAAGCTTCAAAGATATCAA
AGTAACCCTGAGCCCAAGCATTTTGAGGCTGCCCAGAGAGCATTCAGGTA
TCTCAAAGGCACTCAGTCTGAGAGGCTGAGGCTTGGGGGGGACCTGGTTC
TGCGTGCATATACTGATGCTGACTTCTGCCAGGACAGGATTGATGGCAAA
TCTGTCACTGGCTATGTCATTATGCTTGGGGACTCACCTATTGTGTGGGC
CTCAAAGCTTCAGACTGCAGCCACTACATCCACTGTGGAAGCTGAGTATT
TGGCACTGAGATCTGGACTCAAAGATATAATGTGGCTGAGGCATCTTCTT
GTAGACCTCTCATGCCCTCAGGTTGAGCCTACACCAGTCATTGAAGATAA
C
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