mRNA_H-akashiwo_Contig1026.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1026.1.1
Unique NamemRNA_H-akashiwo_Contig1026.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A7S3XPK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPK9_HETAK)

HSP 1 Score: 218 bits (556), Expect = 1.440e-71
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 1
Query:   13 SLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASG-KVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGS 363
            SLEHAL CKKGG +KKG+D LVDESCHLASLAYGAGVKKEPFLRDASG KVLDKDL ADFMAHSVWERQRVAFFDNRILDADAPSRFN NMSYVTAMRT VQEKKKKYQERCEDLAGS
Sbjct:    1 SLEHALCCKKGGNMKKGYDQLVDESCHLASLAYGAGVKKEPFLRDASGGKVLDKDLRADFMAHSVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGS 118          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A7S3Y8S1_HETAK (Hypothetical protein (Fragment) n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8S1_HETAK)

HSP 1 Score: 208 bits (529), Expect = 3.980e-65
Identity = 101/132 (76.52%), Postives = 111/132 (84.09%), Query Frame = 1
Query:    1 GEPFSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGA-GVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGSFTPLVCTVDG 393
            G PFSLEHAL+C KGG +K GHD + DE  HL ++AYGA GVKKEPFLRDASG V DKDL ADF+A  VWERQRVAFFDNRILDADAPSRF+ N SYVTAMR  VQEKK +Y ERCE++AGSFTPLVCTVDG
Sbjct:   45 GAPFSLEHALNCMKGGNIKLGHDQVRDECVHLCTMAYGAAGVKKEPFLRDASGNVRDKDLRADFLAIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDG 176          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A7S3XPJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPJ1_HETAK)

HSP 1 Score: 177 bits (450), Expect = 3.790e-55
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 1
Query:   61 GHDHLVDESC-HLASLAYG-AGVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGSFTPLVCTVD 390
            G D +V + C HL ++AYG AGVKKEPFLR+ASG V DKDL ADFMA  VWERQRVAFFDNRILDADAPSRFN NMSYVTAMRT VQEKKKKY ERCE++AGSFTPLVCT+D
Sbjct:    5 GPDQVVRDECVHLCAMAYGVAGVKKEPFLREASGNVRDKDLRADFMAIGVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYLERCEEMAGSFTPLVCTLD 116          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A7S4DD50_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD50_HETAK)

HSP 1 Score: 163 bits (413), Expect = 3.450e-47
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 GEPFSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDN 237
            GEPFSLEHAL CKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDL ADFMAHSVWERQRVAFFDN
Sbjct:  245 GEPFSLEHALCCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMAHSVWERQRVAFFDN 323          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A7S4D4M7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4M7_HETAK)

HSP 1 Score: 146 bits (368), Expect = 4.360e-43
Identity = 75/102 (73.53%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   61 GHDHLVDESC-HLASLAYGA-GVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAG 360
            G D +V + C HL ++AYGA GVKKEPFLRDA G V DKDL ADFMA  VWERQRVAFFDNRILDADAPSRF+ N SYVTAM   V+EKKKKY ERCE++AG
Sbjct:    5 GPDQVVRDECVHLCTMAYGAAGVKKEPFLRDACGNVRDKDLRADFMAIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMCAAVEEKKKKYLERCEEMAG 106          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A0K8SBY1_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SBY1_LYGHE)

HSP 1 Score: 122 bits (305), Expect = 5.740e-33
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 GEPFSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGSFTPLVCTVDG 393
            GEP ++ HAL+CKKGGL+K+GHD++ DE   LA+LA+G GV  EP LR+    +    L AD   H VW+ +R AFFD RI++ADA S  +   S ++  +   Q K  KY    EDL GSFTPL+C+ DG
Sbjct:    1 GEPMNVNHALNCKKGGLIKRGHDNVRDECALLANLAWG-GVTTEPVLRENEEGM--PALVADIKVHGVWDSERPAFFDTRIINADAVSYLSQEWSAIS--QNAAQAKHAKYNRAAEDLRGSFTPLICSCDG 126          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A6A4JU40_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JU40_APOLU)

HSP 1 Score: 123 bits (309), Expect = 8.910e-33
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 GEPFSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGSFTPLVCTVDG 393
            GE  SL HAL+CKKGGLVK GHD++ DE   LA+LA+G GV  EP +R+A+       L AD     VW+  RVAFFDNRI++ADAPS   C   +    +   +EK +KY +  ED+ GSFTPL+ + DG
Sbjct:   18 GESMSLTHALNCKKGGLVKWGHDYVRDECAMLANLAWG-GVATEPVMREAANG--QPALIADIQDIGVWDSGRVAFFDNRIINADAPS--YCTREWSAVSQQAAREKHRKYDQAAEDVRGSFTPLIVSCDG 143          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A0A9WV22_LYGHE (Putative methyltransferase Exig_2346 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WV22_LYGHE)

HSP 1 Score: 120 bits (300), Expect = 1.780e-32
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 1
Query:    1 GEPFSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGSFTPLVCTVDG 393
            GEP ++ HAL+CKKGGL+K+GHD++ DE   LA+LA+G GV  EP LR+    +    L A+   H VW+ +R AFFD RI++ADA S  +   S ++  +   Q K  KY    EDL GSFTPL+C+ DG
Sbjct:    1 GEPMNVNHALNCKKGGLIKRGHDNVRDECALLANLAWG-GVTTEPVLRENEEGM--PALVANIKVHGVWDSERPAFFDTRIINADAVSYLSQEWSAIS--QNAAQAKHTKYNRAAEDLRGSFTPLICSCDG 126          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A6A4J8J5_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4J8J5_APOLU)

HSP 1 Score: 120 bits (300), Expect = 3.480e-32
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   10 FSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGSFTPLVCTVDG 393
             S+ HAL+CKKGGLVK+GHD + DE   +A+LA+  GV  EP L++  G +    L ADF AH VW+R+RVAFFDNRI++ADAPS  + + S +    T  +EK +KY    ED  GSF+PLV + +G
Sbjct:    1 MSVTHALNCKKGGLVKQGHDAVRDECASMAALAW-RGVMLEPVLQEEIGGM--PGLVADFKAHGVWDRERVAFFDNRIINADAPSYLSQDWSSIAD--TAAREKHQKYDGAAEDHRGSFSPLVSSCEG 123          
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Match: A0A8D8Y6R6_9HEMI (Hypothetical protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8Y6R6_9HEMI)

HSP 1 Score: 120 bits (300), Expect = 1.770e-31
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 GEPFSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAMRTTVQEKKKKYQERCEDLAGSFTPLVCTVDG 393
            GE  +L HAL CKK GLVK GHD++ D+   LAS+A+  GVKKEP +R+    +    L AD   +  WE  R AFFDNR+++ADAPS  +   S+ T   T  +EK  KY    ED+ GSF+PLVC+ DG
Sbjct:   18 GEQMNLTHALDCKKEGLVKHGHDNIRDDCVMLASMAWN-GVKKEPVVREGGPNLTS--LIADIQINGFWEAGRAAFFDNRVVNADAPSYLS--QSWSTLSNTHAREKHLKYDRAIEDIRGSFSPLVCSCDG 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1026.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XPK9_HETAK1.440e-7192.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8S1_HETAK3.980e-6576.52Hypothetical protein (Fragment) n=4 Tax=Heterosigm... [more]
A0A7S3XPJ1_HETAK3.790e-5579.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DD50_HETAK3.450e-4797.47Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4D4M7_HETAK4.360e-4373.53Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A0K8SBY1_LYGHE5.740e-3348.09Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A6A4JU40_APOLU8.910e-3349.62Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]
A0A0A9WV22_LYGHE1.780e-3247.33Putative methyltransferase Exig_2346 (Fragment) n=... [more]
A0A6A4J8J5_APOLU3.480e-3250.00Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]
A0A8D8Y6R6_9HEMI1.770e-3148.09Hypothetical protein n=1 Tax=Cacopsylla melanoneur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1026contigH-akashiwo_Contig1026:37043..37435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15709496
PFAMsRVT_1
Model size393
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.09e-23
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387055.233053-CDS-H-akashiwo_Contig1026:37042..374351681387055.233053-CDS-H-akashiwo_Contig1026:37042..37435Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1026 37043..37435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1026.1.1prot_H-akashiwo_Contig1026.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1026 37043..37435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1026.1.1

>prot_H-akashiwo_Contig1026.1.1 ID=prot_H-akashiwo_Contig1026.1.1|Name=mRNA_H-akashiwo_Contig1026.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=131bp
GEPFSLEHALSCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDA
SGKVLDKDLWADFMAHSVWERQRVAFFDNRILDADAPSRFNCNMSYVTAM
RTTVQEKKKKYQERCEDLAGSFTPLVCTVDG
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mRNA from alignment at H-akashiwo_Contig1026:37043..37435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1026.1.1 ID=mRNA_H-akashiwo_Contig1026.1.1|Name=mRNA_H-akashiwo_Contig1026.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=393bp|location=Sequence derived from alignment at H-akashiwo_Contig1026:37043..37435- (Heterosigma akashiwo CCMP452)
GGAGAGCCTTTTAGCTTGGAGCATGCCCTGAGCTGCAAGAAGGGGGGCCT TGTGAAGAAAGGGCATGATCATCTGGTGGATGAGAGTTGCCACCTGGCGA GCTTGGCTTATGGGGCTGGGGTGAAGAAGGAGCCTTTCCTGAGGGATGCC AGTGGGAAGGTGCTGGACAAGGACCTTTGGGCGGACTTCATGGCTCATAG CGTGTGGGAGAGGCAGAGGGTGGCGTTTTTTGACAACCGCATTTTAGATG CTGACGCACCTTCTCGTTTCAACTGCAATATGAGCTATGTGACTGCCATG CGCACCACAGTACAGGAGAAGAAGAAGAAATACCAGGAGCGCTGCGAGGA CCTGGCTGGGAGCTTTACACCTTTAGTGTGCACGGTGGATGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1026:37043..37435-

>mRNA_H-akashiwo_Contig1026.1.1 ID=mRNA_H-akashiwo_Contig1026.1.1|Name=mRNA_H-akashiwo_Contig1026.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=393bp|location=Sequence derived from alignment at H-akashiwo_Contig1026:37043..37435- (Heterosigma akashiwo CCMP452)
GGAGAGCCTTTTAGCTTGGAGCATGCCCTGAGCTGCAAGAAGGGGGGCCT
TGTGAAGAAAGGGCATGATCATCTGGTGGATGAGAGTTGCCACCTGGCGA
GCTTGGCTTATGGGGCTGGGGTGAAGAAGGAGCCTTTCCTGAGGGATGCC
AGTGGGAAGGTGCTGGACAAGGACCTTTGGGCGGACTTCATGGCTCATAG
CGTGTGGGAGAGGCAGAGGGTGGCGTTTTTTGACAACCGCATTTTAGATG
CTGACGCACCTTCTCGTTTCAACTGCAATATGAGCTATGTGACTGCCATG
CGCACCACAGTACAGGAGAAGAAGAAGAAATACCAGGAGCGCTGCGAGGA
CCTGGCTGGGAGCTTTACACCTTTAGTGTGCACGGTGGATGGG
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