mRNA_H-akashiwo_Contig102.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig102.9.1
Unique NamemRNA_H-akashiwo_Contig102.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 363 bits (931), Expect = 1.110e-121
Identity = 172/332 (51.81%), Postives = 232/332 (69.88%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSRFKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGGGTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALTLDSFER 996
            GF RS +E C+Y    G +   VAVYVDD+VI+ + +  V+  K +L SKY +TD G L   LG++V R++  +  H+ QT FIKDAL KFG ++     TP+D+TVDL+    +KA   D + ++SMVGTLAWV+ W+ PE+ F VHKLQR    PEPKHF A  R  +YLKGT  ++LR+GG  +LRA+ D+DF ND +DGKSVTGYI+FLGD+PIVW+S+LQ +V+TST EAEYLAL    KD+MWLR LL E+G  Q  PT + EDN AC+ WA ++ V ++NRH HV+YH  +E+V    I++ YI+T +Q+AD+ TKAL   +FER
Sbjct:   11 GFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFER 342          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 279 bits (714), Expect = 1.140e-82
Identity = 140/342 (40.94%), Postives = 224/342 (65.50%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTS-TTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPD--DVSRFKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGGGTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQ-ILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALTLDS-FERFANYI 1011
            G+ R+ Y+ C+YS+ S T   T ++VYVDDIV+AS+D+  ++ +K  +   Y ++D G +E+ LG++V R+R  R I + Q  FI++A  KF      P + P++  +D+++N +        +  +F+S+VGT+ W++ W+ PE+ +++H L +    P     AA+  +L+YL  T  K + +GG   L AY DADF ++   G+S +G+ IFLG SPI+W+SR+Q  V+ +TTEAEY++L     DVMWL+ LL  LG KQ  +P  I EDN+ACI+WA + TV++  RH+HV+YH+ +E VQS EI+V+Y++TK QIAD+FTK L  ++ F++F+  +
Sbjct:  655 GYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQGCVP--IYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNNGFKKFSRVL 994          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A6A3HAR6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HAR6_9STRA)

HSP 1 Score: 233 bits (594), Expect = 7.910e-70
Identity = 121/332 (36.45%), Postives = 199/332 (59.94%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSR----FKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGG--GTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALT 978
            GF  ++ + C+Y+R  G     V +YVDD++IAS  +  +A++KA +  K+RI D GR    L + +  +  RR + I Q  + +  + KFG E+  P  TP++  V L+ + E +   D        ++S+VG+L +++  + P+I+ AV KL R    P  KH+ A  +V++YL  T    +   G  GT L AY DAD+V +  D +SV+G ++ L  +P+VW S  QK+V+  +TEAEY+AL +C K+ +W+R LL ++GA+Q+  T I EDNQ  ++ A  +    + +H+ + YHF+REKV S+E+++ Y++T  Q+AD  TK L+
Sbjct:   83 GFEPADADPCVYTRGEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDTGRARFILSIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKSDEPQTEEDKAKMKSRPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWVGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALISTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELEYVDTNNQLADFMTKGLS 414          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.220e-68
Identity = 123/332 (37.05%), Postives = 198/332 (59.64%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSR----FKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGG--GTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALT 978
            GF  ++ + C+Y+R  G     V +YVDD++IAS  +  +A++KA +  K+RI D GR    LG+ +  +  RR + I Q  + +  + KFG E+  P  TP++  V L+   E +   D        ++S+VG+L ++S  + P+I+ AV KL R    P  KH+ A  +V++YL  T    +   G  GT L AY DAD+  +  D +SV+G ++ L  +P+VW S  QK+V+ S+TEAEY+AL +C K+ +W+R L+ ++GA+Q+  T I EDNQ  ++ A  +      +H+ + YHF+R+K  SNE+K+ Y++TK Q+AD  TK L+
Sbjct:  309 GFEPADDDPCVYTRGEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAEQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLS 640          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A6A3L5P5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L5P5_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.230e-68
Identity = 123/333 (36.94%), Postives = 198/333 (59.46%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSRFKS-----MVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGG--GTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALT 978
            GF  ++ + C+Y+R  G     V +YVDD++IAS  +  +A++KA +  K+RI D GR    LG+ +  +  RR + I Q  + +  + KFG E+  P   P++  V L+   E +   +D+ + KS     +VG+L +++  + P+I+ AV KL R    P  KH+ A  +V++YL  T    +   G  GT L AY DAD+  +  D +SV+G ++ L  +P+VW S  QK+V+ S+TEAEY+AL +C K+ +W+R LL ++GA+Q+  T I EDNQ  ++ A  +    + +H+ + YHF+ EKV SNE++  Y+ TK Q+AD  TK L+
Sbjct:   83 GFEPADADPCVYTRGEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGIIQKAYTESIIKKFGQENAKPCLAPLEPGVQLTKGDEPQTE-EDIDKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMTLAKNVGYQARTKHIDIRYHFIPEKVVSNEVEQEYVATKNQLADFMTKGLS 414          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A6A3GUH8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GUH8_9STRA)

HSP 1 Score: 232 bits (591), Expect = 7.350e-68
Identity = 121/332 (36.45%), Postives = 198/332 (59.64%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSR----FKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGG--GTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALT 978
            GF  ++ + C+Y+R  G     V +YVDD++IAS  +  +A++KA +  K+R  D GR    LG+ +  +  RR + I Q  + +  + KFG E+  P  TP++  V  +   E +   D        ++S+VG+L +++  + PEI+ AV KL R    P  KH+ A  +V++YL  T    +   G  GT L AY DAD+ ++  D +SV+G ++ L  +P+VW S  QK+V+ S+TEAEY+AL +C K+ +W+R LL ++GA+++  T I EDNQ  +  A  +    + +H+ + YHF+REKV SNE+++ Y++ K Q+AD+ TK L+
Sbjct:  230 GFEPADADPCVYTRGEGEVECIVCLYVDDMLIASRQKAAIASVKAGIAEKFRRKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQFTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPEISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWADNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECIWMRRLLKDIGAEKVGATVIYEDNQGAMGLAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDAKNQLADIMTKGLS 561          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A6A4DYE5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DYE5_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.360e-67
Identity = 120/332 (36.14%), Postives = 194/332 (58.43%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSR----FKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGG--GTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALT 978
            GF  ++ + C+Y+R  G     V +YVDD++IAS  +  +  +KA +  K+RI D GR    LG+ +  +  RR + I Q    +  + KFG E+  P  TP++  V  +   E +   +        ++S+VG+L +++    P+I+ AV KL R    P  KH+ A   V++YL  T    +   G  GT L AY DA++  +  D +SV+G ++ L  +P+VW S  QK+V+ S+TEAEY+AL +C K+ +W+R LL ++GA+Q+  T I EDNQ  ++ A  +    + +H+ + YHF+REKV SNE+++ Y++TK Q+AD  TK L+
Sbjct:   83 GFEPADADPCVYTRGEGEDECIVCLYVDDMLIASRQKAVIVPVKAGIAEKFRIKDLGRARFILGIEIDYDLERRTLSISQKACTESIIEKFGQENAKPCLTPLEPGVQFTEGDEPQTEENKTKMMSKPYRSLVGSLIYLACGMRPDISVAVAKLSRFLENPCEKHWDAGIAVVRYLLKTNDVGIVCDGLLGTQLEAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYHARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKGLS 414          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 236 bits (602), Expect = 3.910e-67
Identity = 125/332 (37.65%), Postives = 197/332 (59.34%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSR----FKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGG--GTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALT 978
            GF  ++ + C+Y+R  G     V +YVDD++IAS     +A++KA +  K+RI D GR    LG+ +  +  RR + I Q  + +  + KFG E+  P  TP++  V L+   E +   D        ++S+VG+L +++  + P+I+ AV KL R    P  KH+ A  +V++YL  T    +   G  G  L AY DAD+  +  D +SV+G ++ L  +P+VW S  QK+V+ S+TEAEYLAL +C K+ +W+R LL ++GA+Q+  T I EDNQ  ++ A  +    + +H+ + YHFVREK  SNE+K+ Y++TK Q+AD  TK L+
Sbjct:  575 GFEPADADPCVYTRGEGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLS 906          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 236 bits (601), Expect = 4.330e-67
Identity = 124/332 (37.35%), Postives = 197/332 (59.34%), Query Frame = 1
Query:    1 GFARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLSVNKEYKAHPDDVSR----FKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGG--GTILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALT 978
            GF  ++ + C+Y+R  G     V +YVDD++IAS  +  +A++KA +  K+RI D GR    LG+ +  N  RR + I Q  + +  + K G E+  P  TP++  V L+   E +   D        ++S+VG+L ++S  + P+I+ AV KL R    P  KH+ A  +V++YL  T    +   G  GT L AY DAD+  +  D +SV+G ++ L  +P+VW S  QK+V+ S+TEAEY+AL +C K+ +W+R LL ++GA+Q+  T I EDNQ  ++ A  +      +H+ + YHF+R+K  SNE+K+ Y++TK Q+AD  TK L+
Sbjct:  553 GFEPADDDPCVYTRGEGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLS 884          
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 236 bits (601), Expect = 3.140e-66
Identity = 129/347 (37.18%), Postives = 200/347 (57.64%), Query Frame = 1
Query:    4 FARSEYEGCIYSRTSGTSTTYVAVYVDDIVIASNDRRTVAALKANLKSKYRITDAGRLENFLGLRVTRNRGRRLIHIDQTQFIKDALVKFGFEHCLPASTPMDNTVDLS------VNKEYKAHPDDV--SRFKSMVGTLAWVSTWSVPEITFAVHKLQRATNYPEPKHFAAAARVLKYLKGTGHKALRIGGGT-----ILRAYCDADFVND*LDGKSVTGYIIFLGDSPIVWTSRLQKSVSTSTTEAEYLALGECTKDVMWLRYLLSELGAKQILPTDINEDNQACISWATEITVTRKNRHLHVNYHFVREKVQSNEIKVRYIETKEQIADLFTKALTLDSFERFAN 1005
            F++S  + C+Y RT    T+Y+ V+VDD++I ++    +  +KA LK ++ I+D G  +  +GL V R+R +  I + QT ++   L K+G E+C P STPMD  V L+      V  E +   D+    R+ + VG+L + +  + P+I +AV KL + ++ P   H+ A  RV +YL GT  + L  GG       I  AYCDADF +D  D KS++GY +FLG++ I W+S+ Q +++ STTEAEY A+   T+ ++WLR L  +LG  Q  PT +  DNQ+ I+   +     +++H  +  HFVR KV    I+V Y  T E  +D+FTKAL     E+F +
Sbjct:  898 FSKSNVDHCVYIRTENGHTSYITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQKLSKYSSNPGNSHWTALKRVFRYLAGTRDRVLFYGGDVDEDEVIFSAYCDADFASDSDDRKSISGYTLFLGNAAIAWSSKKQTTIALSTTEAEYTAIAHATRQIIWLRNLFQDLGYTQNDPTILFSDNQSAIALTQDPQFHARSKHFDITNHFVRAKVYDQTIEVIYCPTDEMTSDIFTKALAKPKHEQFTS 1244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig102.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.110e-12151.81Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK1.140e-8240.94Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6A3HAR6_9STRA7.910e-7036.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3DSS8_9STRA1.220e-6837.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3L5P5_9STRA1.230e-6836.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GUH8_9STRA7.350e-6836.45Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4DYE5_9STRA1.360e-6736.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YGI7_9STRA3.910e-6737.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0QQ26_9STRA4.330e-6737.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A067T5Q4_GALM33.140e-6637.18Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig102contigH-akashiwo_Contig102:405424..406434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7425.NV18536-PA
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1011
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.02e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size294
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387053.2804108-UTR-H-akashiwo_Contig102:405423..4058341681387053.2804108-UTR-H-akashiwo_Contig102:405423..405834Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig102 405424..405834 -
1681387053.2972589-UTR-H-akashiwo_Contig102:406128..4064341681387053.2972589-UTR-H-akashiwo_Contig102:406128..406434Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig102 406129..406434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387053.2896237-CDS-H-akashiwo_Contig102:405834..4061281681387053.2896237-CDS-H-akashiwo_Contig102:405834..406128Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 405835..406128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig102.9.1prot_H-akashiwo_Contig102.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig102 405835..406128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig102.9.1

>prot_H-akashiwo_Contig102.9.1 ID=prot_H-akashiwo_Contig102.9.1|Name=mRNA_H-akashiwo_Contig102.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MDNTVDLSVNKEYKAHPDDVSRFKSMVGTLAWVSTWSVPEITFAVHKLQR
ATNYPEPKHFAAAARVLKYLKGTGHKALRIGGGTILRAYCDADFVND*
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mRNA from alignment at H-akashiwo_Contig102:405424..406434-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig102.9.1 ID=mRNA_H-akashiwo_Contig102.9.1|Name=mRNA_H-akashiwo_Contig102.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1011bp|location=Sequence derived from alignment at H-akashiwo_Contig102:405424..406434- (Heterosigma akashiwo CCMP452)
GGTTTTGCAAGGAGCGAGTACGAAGGGTGCATATATTCTAGGACCTCGGG CACTTCGACTACCTATGTGGCTGTTTATGTTGATGACATCGTTATTGCAT CCAACGATCGCAGAACCGTGGCCGCGTTGAAGGCGAATTTGAAAAGCAAG TACAGGATCACTGATGCGGGTCGGTTGGAGAATTTCTTGGGCCTCAGGGT TACCAGAAATAGAGGACGCAGATTGATTCACATTGATCAAACTCAGTTCA TAAAGGACGCTTTGGTTAAGTTTGGTTTCGAACATTGTTTGCCTGCGTCC ACACCCATGGATAACACGGTAGACTTGTCTGTGAATAAAGAATACAAAGC TCACCCCGATGATGTTTCCAGATTCAAATCCATGGTGGGGACATTAGCTT GGGTGTCTACATGGTCCGTGCCAGAAATTACATTTGCAGTCCATAAACTT CAACGGGCAACCAACTATCCAGAGCCTAAACATTTTGCGGCTGCTGCCCG TGTGTTAAAGTATCTAAAGGGCACTGGACACAAAGCTTTGAGGATTGGGG GTGGAACAATCCTACGAGCATATTGCGATGCTGATTTCGTAAATGATTGA TTGGATGGTAAATCAGTAACTGGGTATATCATATTCCTAGGTGATTCACC GATAGTGTGGACATCTCGGCTCCAAAAGAGCGTCTCCACTTCAACTACTG AAGCTGAGTACCTAGCTTTGGGAGAGTGTACAAAGGATGTAATGTGGCTC AGGTATCTTCTGAGTGAGTTAGGGGCCAAACAGATTCTACCAACAGACAT TAATGAAGACAATCAGGCTTGTATCTCCTGGGCTACCGAGATCACTGTGA CCAGGAAGAATAGACATCTACATGTCAATTATCATTTTGTCAGAGAAAAA GTACAGTCAAATGAAATCAAAGTGAGATATATTGAAACAAAGGAGCAAAT TGCAGACCTCTTCACTAAGGCACTGACTCTGGACTCTTTTGAAAGATTTG CCAACTACATA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig102:405424..406434-

>mRNA_H-akashiwo_Contig102.9.1 ID=mRNA_H-akashiwo_Contig102.9.1|Name=mRNA_H-akashiwo_Contig102.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig102:405424..406434- (Heterosigma akashiwo CCMP452)
ATGGATAACACGGTAGACTTGTCTGTGAATAAAGAATACAAAGCTCACCC
CGATGATGTTTCCAGATTCAAATCCATGGTGGGGACATTAGCTTGGGTGT
CTACATGGTCCGTGCCAGAAATTACATTTGCAGTCCATAAACTTCAACGG
GCAACCAACTATCCAGAGCCTAAACATTTTGCGGCTGCTGCCCGTGTGTT
AAAGTATCTAAAGGGCACTGGACACAAAGCTTTGAGGATTGGGGGTGGAA
CAATCCTACGAGCATATTGCGATGCTGATTTCGTAAATGATTGA
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