mRNA_H-akashiwo_Contig1012.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1012.2.1
Unique NamemRNA_H-akashiwo_Contig1012.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: A0A662XB56_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XB56_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.600e-37
Identity = 68/97 (70.10%), Postives = 76/97 (78.35%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLG 358
            MASGHATVKAV SGDT+VL+G AT+GPPPEL +TLSSL APRL R     +EPYAW SRE LR +C+GK VRF+VEYRV AINRDFG VWL     G
Sbjct:    1 MASGHATVKAVLSGDTLVLMGAATNGPPPELMLTLSSLQAPRLARSPEQTNEPYAWASREHLRKLCVGKVVRFKVEYRVPAINRDFGSVWLPANSRG 97
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BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: H3GJC3_PHYRM (Uncharacterized protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GJC3_PHYRM)

HSP 1 Score: 144 bits (362), Expect = 2.100e-37
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLG 358
            MASGHATVKAV SGDT+VL+G AT+GPPPEL +TLSSL APRL R     +EPYAW SRE LR +C+GK VRFQVEYRV AINRDFG VWL     G
Sbjct:    1 MASGHATVKAVLSGDTLVLMGAATNGPPPELMLTLSSLQAPRLARSPEQSNEPYAWASREHLRKLCVGKQVRFQVEYRVPAINRDFGSVWLPANSRG 97
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BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: A0A8K1CME8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CME8_PYTOL)

HSP 1 Score: 142 bits (358), Expect = 7.260e-37
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLG 358
            MASG ATVKAV SGDT+VL+G AT+GPPPEL +TL+SL APRL R    P EPYAW SREFLR +CIGK VRF+VEYRV AINRDFG VWL     G
Sbjct:    1 MASGRATVKAVISGDTLVLMGAATNGPPPELVLTLASLQAPRLARGPDQPSEPYAWASREFLRKLCIGKQVRFKVEYRVNAINRDFGSVWLPANARG 97
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BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: A0A5D6XGZ2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGZ2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 9.930e-37
Identity = 70/97 (72.16%), Postives = 78/97 (80.41%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLG 358
            MASG ATVKAV SGDT+VLVG AT+GPPPEL +TL+SL APRL R   + +EPYAW SREFLR + IGKTVRF+VEYRVAAINRDFG VWL     G
Sbjct:    1 MASGTATVKAVISGDTLVLVGAATNGPPPELVLTLASLQAPRLARSAEASNEPYAWASREFLRKLAIGKTVRFKVEYRVAAINRDFGSVWLPPNARG 97
[Close]
BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: A0A3M6VTR0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTR0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.860e-36
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWL 340
            MASGHATVKAV SGDT+VL+G AT+GPPPEL +TLSSL APRL R     +EPYAW SRE LR +C+GK VRFQVEYR+++I+RDFG VWL
Sbjct:    1 MASGHATVKAVLSGDTLVLMGTATNGPPPELMLTLSSLQAPRLARSPEQTNEPYAWASREHLRKLCVGKVVRFQVEYRISSISRDFGSVWL 91
[Close]
BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: A0A024U3I4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3I4_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.650e-36
Identity = 69/102 (67.65%), Postives = 82/102 (80.39%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLGAAVAR 373
            MASG+ATVKAV SGDT+VLVG + +GPPPEL +TLSSL AP+L R     DEPYA+ SREFLR + IGK VRF+V+YRVAAINRDFG V+ +G  +G AVAR
Sbjct:    1 MASGNATVKAVISGDTVVLVGASKNGPPPELMLTLSSLQAPKLARTAEQTDEPYAFASREFLRKLLIGKPVRFKVDYRVAAINRDFGSVYFNGENVGLAVAR 102
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BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: K3X0E8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0E8_GLOUD)

HSP 1 Score: 139 bits (351), Expect = 6.390e-36
Identity = 69/97 (71.13%), Postives = 75/97 (77.32%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLG 358
            MASG ATVKAV SGDT+VLVG AT+GPPPEL +TL+SL APRL R     +EPYAW SREFLR   IGKTVRF+VEYRV AINRDFG VWL     G
Sbjct:    1 MASGTATVKAVISGDTLVLVGAATNGPPPELVLTLASLQAPRLARSAEQTNEPYAWASREFLRKTAIGKTVRFKVEYRVGAINRDFGSVWLPANARG 97
[Close]
BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: A0A485L4Y9_9STRA (Aste57867_15990 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4Y9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.180e-35
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLGAAVAR 373
            MASG+ATVKAV SGDT+VLVG+AT+GPPPEL +TL+SL AP+L R     DEPYA+ SREFLR++ IGK VRF+VEYRV+ INRDFG ++L+G  +   VAR
Sbjct:    1 MASGNATVKAVISGDTVVLVGSATNGPPPELMLTLASLQAPKLARTAEQTDEPYAFASREFLRNLLIGKQVRFKVEYRVSVINRDFGSIYLNGENVCVTVAR 102
[Close]
BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: A0A067C0V4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0V4_SAPPC)

HSP 1 Score: 137 bits (346), Expect = 2.980e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLGAAVAR 373
            MASG+ATVKAV SGDT+VL+GNAT+GPPPEL +TL+SL AP+L R     DEPYA+ SRE+LR++ IGK VRF+VEY+V+ INRDFG ++LDG  +   VA+
Sbjct:    1 MASGNATVKAVLSGDTVVLMGNATNGPPPELMLTLASLQAPKLARTAEQHDEPYAFASREYLRNLLIGKVVRFKVEYKVSVINRDFGSIYLDGENVCVLVAK 102
[Close]
BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Match: W4FNZ3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNZ3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 7.650e-35
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 2 
Query:   68 MASGHATVKAVPSGDTIVLVGNATS-GPPPELQITLSSLNAPRLGRQGGSPDEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLGAAVAR 373
            MASG+ATVKAV SGDT+VLVG A+S GPPPE+ +TLSSL AP+L R     DEPYA+ SREFLR + IGK VRF+V+YRV+ INRDFG V+L+G  +G AVAR
Sbjct:    1 MASGNATVKAVISGDTVVLVGAASSNGPPPEIMLTLSSLQAPKLARTAEQTDEPYAFASREFLRKLLIGKPVRFKVDYRVSVINRDFGSVYLNGENVGLAVAR 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1012.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662XB56_9STRA1.600e-3770.10Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
H3GJC3_PHYRM2.100e-3771.13Uncharacterized protein n=19 Tax=Peronosporaceae T... [more]
A0A8K1CME8_PYTOL7.260e-3771.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XGZ2_9STRA9.930e-3772.16Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VTR0_9STRA1.860e-3671.43Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A024U3I4_9STRA4.650e-3667.65Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
K3X0E8_GLOUD6.390e-3671.13Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A485L4Y9_9STRA1.180e-3565.69Aste57867_15990 protein n=1 Tax=Aphanomyces stella... [more]
A0A067C0V4_SAPPC2.980e-3563.73Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
W4FNZ3_9STRA7.650e-3566.99Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1012contigH-akashiwo_Contig1012:186133..187062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra76260
PFAMsSNase,TUDOR
Model size375
Max annot lvl4776|Peronosporales
KEGG koko:K15979
KEGG Pathwayko05169,ko05203,map05169,map05203
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.96e-38
EggNOG OGsCOG1525@1|root,KOG2039@2759|Eukaryota,3Q77I@4776|Peronosporales
DescriptionStaphylococcal nuclease homologues
Cds size306
COG categoryK
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.9513695-UTR-H-akashiwo_Contig1012:186132..1861991681387050.9513695-UTR-H-akashiwo_Contig1012:186132..186199Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1012 186133..186199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.9606254-CDS-H-akashiwo_Contig1012:186199..1863551681387050.9606254-CDS-H-akashiwo_Contig1012:186199..186355Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1012 186200..186355 +
1681387050.9706562-CDS-H-akashiwo_Contig1012:186460..1865261681387050.9706562-CDS-H-akashiwo_Contig1012:186460..186526Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1012 186461..186526 +
1681387050.9791384-CDS-H-akashiwo_Contig1012:186978..1870621681387050.9791384-CDS-H-akashiwo_Contig1012:186978..187062Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1012 186979..187062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1012.2.1prot_H-akashiwo_Contig1012.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1012 186200..187062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1012.2.1

>prot_H-akashiwo_Contig1012.2.1 ID=prot_H-akashiwo_Contig1012.2.1|Name=mRNA_H-akashiwo_Contig1012.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=102bp
MASGHATVKAVPSGDTIVLVGNATSGPPPELQITLSSLNAPRLGRQGGSP
DEPYAWGSREFLRSMCIGKTVRFQVEYRVAAINRDFGQVWLDGRPLGAAV
AR
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mRNA from alignment at H-akashiwo_Contig1012:186133..187062+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1012.2.1 ID=mRNA_H-akashiwo_Contig1012.2.1|Name=mRNA_H-akashiwo_Contig1012.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=930bp|location=Sequence derived from alignment at H-akashiwo_Contig1012:186133..187062+ (Heterosigma akashiwo CCMP452)
CCCATTTACCATTTACGAGCATACCTATTAAAATTGGTTGCACAAAGCAA
CCGAAATAGCAGACAAAATGGCATCTGGACATGCAACAGTAAAAGCTGTG
CCATCTGGTGATACTATCGTCCTTGTAGGAAATGCAACTTCTGGCCCTCC
GCCTGAGCTCCAGATTACGCTCTCATCCCTCAACGCTCCCCGCCTTGGCA
GACAGGGAGGTTCACCCGATGAGGTATGATCACTTTAAAGAGGATGCTGT
GTACATGCCCTGAATTATCAATATACAGGTCTCCAAATCATCAATACAAT
GATACCCCTTATAATCATTTCTGGGCAGCCTTATGCTTGGGGGAGCCGGG
AATTTTTGCGCTCGATGTGTATCGGCAAAACAGTGCGTTTCCAGGTCAGT
CCCAGAATTTACCCCTAGCACAGCAGTGCCTCAGATTTGGTTGTTCCGCT
GAAAGTGTATACAGGCGGTGCCGCGCCACTGCACAAAGAGAAAGCACCAC
AATCCCACCTCCTATATCTGGCAGGCTTGACTACACCCATCATCATTTTT
TTGCTCGCAGTGATTTCCAAACACTATTTGTACTCCCCTTACCCTGCCCT
CACCCCCCGCCCCCCCGGCGACCCCCTCCACCTCCCGCTGCCCCGAGAGG
ATGCTGTACGCATGCCCCACACCGCCCCTTCACAGGCTCACAGCCCCCCG
GCGCGGCACTCGACCGCCCCCCTTCCGACACCCCCCTCCCCGGCGCCGCG
CCCGCCGCCCGCCGCCACGGGCGCGCGCCCCGCGACCCACGCTCGAATCC
TCGCCGGGCGGGGCggGGGCGGGGGCGGGGGCGGCGGGGGCGCCAGGTGG
AGTACCGGGTGGCGGCGATCAACCGCGACTTCGGGCAGGTGTGGCTGGAC
GGCCGGCCGCTGGGCGCCGCCGTGGCCCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1012:186133..187062+

>mRNA_H-akashiwo_Contig1012.2.1 ID=mRNA_H-akashiwo_Contig1012.2.1|Name=mRNA_H-akashiwo_Contig1012.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=306bp|location=Sequence derived from alignment at H-akashiwo_Contig1012:186133..187062+ (Heterosigma akashiwo CCMP452)
ATGGCATCTGGACATGCAACAGTAAAAGCTGTGCCATCTGGTGATACTAT
CGTCCTTGTAGGAAATGCAACTTCTGGCCCTCCGCCTGAGCTCCAGATTA
CGCTCTCATCCCTCAACGCTCCCCGCCTTGGCAGACAGGGAGGTTCACCC
GATGAGCCTTATGCTTGGGGGAGCCGGGAATTTTTGCGCTCGATGTGTAT
CGGCAAAACAGTGCGTTTCCAGGTGGAGTACCGGGTGGCGGCGATCAACC
GCGACTTCGGGCAGGTGTGGCTGGACGGCCGGCCGCTGGGCGCCGCCGTG
GCCCGC
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