mRNA_H-akashiwo_Contig1011.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1011.8.1
Unique NamemRNA_H-akashiwo_Contig1011.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:225848..226132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.4328458-UTR-H-akashiwo_Contig1011:225847..2258621681387050.4328458-UTR-H-akashiwo_Contig1011:225847..225862Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1011 225848..225862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.4454098-CDS-H-akashiwo_Contig1011:225862..2259681681387050.4454098-CDS-H-akashiwo_Contig1011:225862..225968Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 225863..225968 +
1681387050.4541435-CDS-H-akashiwo_Contig1011:226076..2261321681387050.4541435-CDS-H-akashiwo_Contig1011:226076..226132Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 226077..226132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.8.1prot_H-akashiwo_Contig1011.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1011 225863..226132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1011.8.1

>prot_H-akashiwo_Contig1011.8.1 ID=prot_H-akashiwo_Contig1011.8.1|Name=mRNA_H-akashiwo_Contig1011.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
MGCTHSVENDAGAIGTAKQRSKMSKSYRDQQADDAASFLSQNHGLSSKVQ
ISIE
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mRNA from alignment at H-akashiwo_Contig1011:225848..226132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1011.8.1 ID=mRNA_H-akashiwo_Contig1011.8.1|Name=mRNA_H-akashiwo_Contig1011.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:225848..226132+ (Heterosigma akashiwo CCMP452)
CAGAAACCATTGTAGATGGGGTGTACTCATTCTGTCGAGAACGATGCTGG
TGCGATTGGCACAGCTAAGCAACGGTCGAAGATGTCCAAATCATACCGTG
ACCAGCAAGCTGACGATGCAGGTAGCGTTAAAACAGCGAAAACTCTTGTA
TACATGAGGTTTTAGAGGGTGACTTACCATCAATTCACGCTAGTGTATGG
CTTTATTTCTTTACGCGTGATTTATAAAGCATCATTTTTGAGCCAGAACC
ACGGGCTTAGCTCAAAAGTGCAGATTTCTATCGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1011:225848..226132+

>mRNA_H-akashiwo_Contig1011.8.1 ID=mRNA_H-akashiwo_Contig1011.8.1|Name=mRNA_H-akashiwo_Contig1011.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:225848..226132+ (Heterosigma akashiwo CCMP452)
ATGGGGTGTACTCATTCTGTCGAGAACGATGCTGGTGCGATTGGCACAGC
TAAGCAACGGTCGAAGATGTCCAAATCATACCGTGACCAGCAAGCTGACG
ATGCAGCATCATTTTTGAGCCAGAACCACGGGCTTAGCTCAAAAGTGCAG
ATTTCTATCGAG
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